Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015938

Physical Location & Seq

Genomic Coordinates Forward (+)

54160195 .. 54162831

Gene Structure 2637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2637 bp

ATGGCGGTTTCAGCTAATAACTCTCAAATTCCTCACAGCCAACACCTCCCAAATCCTCAGTTCCCCAAAACCCACAAGCTCGAAACCCTAAGCTTCTCCACCAAGCTCCAAAGTCCCCATATTTCTTCTAGGAAAACCCAAGAAATCACCGTCTGCAGCACCTCCTCCGTCACCACCACCACCAACACCCAGAACCCCAACTCCGACCTAAACGAGCTCTGCCGCCATGGGAACCTCGAGAAAGCTCTGAAGCTCTTGGACTCTATGCAGGAGGTTCAAGTTAAGGTGGAAGAAGATGCTTATGTTGCTTTGGTTAGGCTATGCGAGTGGAAGAGAACACACGAGGACGGGGCTCGTGTGTACAAGTGCATATCGAATTCGATGACCCTTTTGAGCGTTAGGCTTGGTAATGCGCTGTTGAGCATGTTTGTGAGGTTTGGCAATTTGGTTGATGCTTGGTATGTGTTTGGGAGAATGGGTGAGAGGGATGTGTTTTCTTGGAATGTTTTGGTTGGTGGGTATGCGAAAGCCGGGTTTTTCGATGAGGCTTTGAACTTATATCATAGAATGTTGTGGGTTGGGATTGTGCCTGATGTGTATACATTTCCTTGTGTTCTTAGAACATGTGGGGGAGTGCCGGACTTGGCGAGAGGGAGGGAGATTCATGTGCATGTGATTCGATTTGGGTTTGAGTCGGATGTCGATATTGTGAATGCTTTGATTACAATGTATGTGAAATGCGGGGTGGTCGGTAGTGCACGGGTGCTGTTTGATAGAATGCCTAGGAGAGACAGGATTTCGTGGAATGCAATGATTTCGGGGTATTTTGAGAATGGAGAGTATTTGGAAGGACTGAGATTGTTTCTTATGATGCGGGAGTTTTCAGTTGATCCGGATTTGATGACCGTGACTAGCTTGTTATCTGCTTGCGAGGTTCTTGGTGAAGACAAGTTAGGGAGGGAAATACATGGTTATGTTATGAAAACAGAGTTGGTGGACGATGTTTCGGTGTGTAGTTCTTTGATTCAGATGTATTCAGTTGTTGGGGATTTGGGGGAAGCGGAGAAAGTATTTTCTAGGATGGAAGATAAAGATGTGGTGTTATGGACATCGATGATTTCGGGTTATGTGAATAACGCACTGCCTGAGAAGGCTGTGGAAACCTACAAAGTGATGGAGCAGGAGGGTATTTTGCCAGATGAAATAACTTTAGCCAGTGTTATATCTGCTTGTGCTTGTTTAGGGAACTTAGATATGGGTATCAAGCTTCATGAGCTTGCTGACAGGACTGGGCTTATATCGTATGTGATAGTTGCTAATACTCTCATTGATATGTATTCTAAGTGTAAATGCATTGACAAAGCATTGGAAGTGTTCCACCAGATCCCAGGAAAGAATGTCATATCTTGGACTTCAATCATACTCGGCCTTCGGATAAACAATCGGTGCTTTGAGGCTTTAATTTTCTTTCGGCAAATGAAACTCAGGTTAAAACCAAATTCTATTACCTTGGTTTCCGTCCTAGCTGCTTGTGCTAGAATAGGAGCTCTGATGTGTGGAAAGGAGATTCATGCTCATGCACTAAGGAGTGGTGTAGCATTTGATGGTTTTTTACCCAATGCACTTCTTGACATGTATGTAAGGTGTGGAAGGATGGGATCCGCATGGAACCAGTTCAACCATAACAAGAACGATGTCACTGCATGGAATATCATACTAACTGGGTATGCCCAGAGGGGGCAAGGAAGGAATGCCATTGAGCTATTCCACACAATGGCTGAGTCAAGGGTAGACCCAGATGAGATCACATTTATGGCGCTACTATGTGCTTGTAGCAGGTCTGGTATGGTTAGTGAAGGTTTGGAGTATTTCATTAGCATGAAACTTAATTATGGCATTACACCTAATCTGAAACACTATGCGTGCATTGTCGATCTACTTGGCCGCGCTGGGCAATTGGCTGAAGCTCGTGAGTTTATACAGAAGATGCCTATAAATCCAGATGCAGCTATCTGGGGAGCCTTGTTAAATGCTTGCGTGATCCACAGGCAGGTTGAACTTGGTGAACTTGCAGCCCAGAAAATATTTGAAACGGATGCCCAAAGTGTAGGGTATTACATACTTATCTGTAACCTTTATGCAGACAGTGGTATGTGGGAAGAAGTTGCGGTGGTAAGAAACATGATGAGGGAGAGGGGGCTAAGTGTAGATCCTGGGTGCAGTTGGGTTGAGGTAAAGGGAAAAGTTCATGCTTTCCTAAGTGGTGATAACTTCCACCCTCAAATAGAGGAACTTAATGCAGTTTTGGAGGGATTTTATGAGAAAATGAGATCATTGGCTTTCACAGAGCCAGAAAGTAGGCTTAAAGATGAAGTTGAAGCTTCAAAAGCTGAGATCTTTTGTGGACACAGTGAGAGACTAGCAGTTGCATTTGGCCTCATTAATACAGCCCCGGGGACGCCTATATGGGTGACAAAGAATCTTTACATGTGCCAAAGCTGTCACAGTACTGTCAAATTTATCTCTAAGGTTGTGCGCCGGGAGATTTGTGTAAGGGATACTGAAAAATTCCACCATTTCAAGGATGGCTTCTGTACTTGTGGGGATGAAGGTTATTGGGGAAAGCCAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009451 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

879

Amino Acids

98.46

Weight (kDa)

6.09

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	162 - 209	2.4e-09	PPR repeat family
PPR	PF01535	165 - 194	7.8e-07	PPR repeat
PPR_2	PF13041	264 - 310	1.9e-08	PPR repeat family
PPR	PF01535	266 - 294	4.6e-06	PPR repeat
PPR_2	PF13041	364 - 412	4.7e-10	PPR repeat family
PPR_2	PF13041	565 - 612	1.1e-10	PPR repeat family
E_motif	PF20431	682 - 744	2.6e-17	E motif
DYW_deaminase	PF14432	788 - 869	2.8e-30	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15510
fragaria_vesca	FvH4_6g30690
malus_domestica	MD17G1201500.v1.1
prunus_persica	Prupe.3G077400_v2.0.a1
pyrus_communis	pycom17g20540
rosa_chinensis	RchiOBHm_Chr2g0137061
rosa_laevigata	RLG00000019603
rosa_multiflora	Rmu_sc0001374.1_g000025
rosa_roxburghii	Rroxscaffold_2G00107710
rosa_rugosa	Rorug02G0337700
rosa_samantha	Rh2AG386800 Rh2BG393600 Rh2CG374100 Rh2DG409700
rosa_wichuraiana	Rw2G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1827, 2041
AccB7I	CCANNNNNTGG	1 cut(s)	1774
AccI	GTMKAC	2 cut(s)	599, 1791
AccII	CGCG	1 cut(s)	1947
AccIII	TCCGGA	1 cut(s)	892
AciI	CCGC	8 cut(s)	5, 223, 741, 874, 1061, 1662, 1945, 2168
AclWI	GGATC	6 cut(s)	884, 1378, 1653, 1666, 2035, 2204
AcoI	YGGCCR	1 cut(s)	1942
AcsI	RAATTY	5 cut(s)	27, 376, 1498, 2516, 2567
AcuI	CTGAAG	2 cut(s)	269, 1983
AcyI	GRCGYC	1 cut(s)	2459
AfaI	GTAC	3 cut(s)	362, 2509, 2596
AfiI	CCNNNNNNNGG	4 cut(s)	1737, 1774, 2050, 2581
AflIII	ACRYGT	3 cut(s)	623, 1632, 2487
AgsI	TTSAA	9 cut(s)	278, 553, 1416, 1678, 2057, 2090, 2378, 2385, 2581
AjnI	CCWGG	2 cut(s)	1387, 2212
AjuI	GAANNNNNNNTTGG	2 cut(s)	974, 1006
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
Alw21I	GWGCWC	3 cut(s)	219, 760, 1549
Alw26I	GTCTC	2 cut(s)	783, 2410
Alw44I	GTGCAC	1 cut(s)	756
AlwI	GGATC	6 cut(s)	884, 1378, 1653, 1666, 2035, 2204
Ama87I	CYCGRG	2 cut(s)	236, 2452
Aor13HI	TCCGGA	1 cut(s)	892
AoxI	GGCC	3 cut(s)	1426, 1942, 2434
ApaLI	GTGCAC	1 cut(s)	756
ApeKI	GCWGC	4 cut(s)	156, 1526, 2006, 2072
ApoI	RAATTY	5 cut(s)	27, 376, 1498, 2516, 2567
AseI	ATTAAT	1 cut(s)	2442
Asp700I	GAANNNNTTC	1 cut(s)	1673
AspA2I	CCTAGG	1 cut(s)	782
AspLEI	GCGC	4 cut(s)	415, 1819, 1949, 2538
AsuC2I	CCSGG	4 cut(s)	532, 2453, 2454, 2540
AsuHPI	GGTGA	7 cut(s)	139, 163, 491, 953, 2075, 2276, 2482
AvaI	CYCGRG	2 cut(s)	236, 2452
AvrII	CCTAGG	1 cut(s)	782
BaeGI	GKGCMC	1 cut(s)	760
BamHI	GGATCC	1 cut(s)	1658
BanII	GRGCYC	3 cut(s)	219, 355, 1549
BauI	CACGAG	3 cut(s)	341, 354, 1968
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	3 cut(s)	219, 760, 1549
BbvI	GCAGC	4 cut(s)	168, 1513, 2018, 2084
BccI	CCATC	5 cut(s)	1075, 1168, 1598, 1648, 2579
BcgI	CGANNNNNNTGC	6 cut(s)	659, 693, 798, 832, 1682, 1716
BciT130I	CCWGG	2 cut(s)	1389, 2214
BciVI	GTATCC	1 cut(s)	2551
BcnI	CCSGG	4 cut(s)	532, 2453, 2454, 2540
BcoDI	GTCTC	2 cut(s)	783, 2410
BfaI	CTAG	7 cut(s)	129, 783, 912, 1077, 1523, 1536, 2420
BfmI	CTRYAG	1 cut(s)	154
BfoI	RGCGCY	1 cut(s)	1820
BfuAI	ACCTGC	2 cut(s)	1827, 2041
BfuI	GTATCC	1 cut(s)	2551
BglII	AGATCT	1 cut(s)	2394
BisI	GCNGC	6 cut(s)	157, 223, 1527, 1945, 2007, 2073
BlnI	CCTAGG	1 cut(s)	782
BlsI	GCNGC	6 cut(s)	158, 224, 1528, 1946, 2008, 2074
BmcAI	AGTACT	1 cut(s)	2509
Bme1390I	CCNGG	6 cut(s)	532, 1389, 2214, 2453, 2454, 2540
BmeT110I	CYCGRG	2 cut(s)	236, 2452
BmiI	GGNNCC	4 cut(s)	233, 1660, 1670, 2020
BmrFI	CCNGG	6 cut(s)	532, 1389, 2214, 2453, 2454, 2540
BmrI	ACTGGG	2 cut(s)	1299, 1731
BmsI	GCATC	6 cut(s)	286, 442, 861, 1977, 1993, 2086
BmuI	ACTGGG	2 cut(s)	1299, 1731
BpiI	GAAGAC	1 cut(s)	951
Bpu10I	CCTNAGC	1 cut(s)	89
BpuMI	CCSGG	4 cut(s)	532, 2453, 2454, 2540
Bsa29I	ATCGAT	1 cut(s)	1112
BsaHI	GRCGYC	1 cut(s)	2459
BsaJI	CCNNGG	8 cut(s)	226, 782, 1387, 1509, 2213, 2451, 2452, 2453
BsaWI	WCCGGW	1 cut(s)	892
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 463, 493
Bsc4I	CCNNNNNNNGG	4 cut(s)	1737, 1774, 2050, 2581
Bse1I	ACTGG	4 cut(s)	1215, 1294, 1672, 1726
Bse3DI	GCAATG	1 cut(s)	816
BseAI	TCCGGA	1 cut(s)	892
BseBI	CCWGG	2 cut(s)	1389, 2214
BseCI	ATCGAT	1 cut(s)	1112
BseDI	CCNNGG	8 cut(s)	226, 782, 1387, 1509, 2213, 2451, 2452, 2453
BseGI	GGATG	7 cut(s)	493, 703, 1086, 1659, 2101, 2590, 2611
BseLI	CCNNNNNNNGG	4 cut(s)	1737, 1774, 2050, 2581
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	6 cut(s)	71, 845, 1137, 1498, 1770, 2382
BseNI	ACTGG	4 cut(s)	1215, 1294, 1672, 1726
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	4 cut(s)	168, 1513, 2018, 2084
BseYI	CCCAGC	1 cut(s)	1949
BsgI	GTGCAG	1 cut(s)	2239
Bsh1236I	CGCG	1 cut(s)	1947
BshFI	GGCC	3 cut(s)	1428, 1944, 2436
BshVI	ATCGAT	1 cut(s)	1112
BsiHKAI	GWGCWC	3 cut(s)	219, 760, 1549
BsiHKCI	CYCGRG	2 cut(s)	236, 2452
BsiSI	CCGG	5 cut(s)	531, 638, 893, 2453, 2539
BslFI	GGGAC	2 cut(s)	99, 2470
BslI	CCNNNNNNNGG	4 cut(s)	1737, 1774, 2050, 2581
BsmAI	GTCTC	2 cut(s)	783, 2410
BsmFI	GGGAC	2 cut(s)	99, 2470
BsmI	GAATGC	4 cut(s)	718, 783, 811, 1756
BsnI	GGCC	3 cut(s)	1428, 1944, 2436
BsoBI	CYCGRG	2 cut(s)	236, 2452
Bsp1286I	GDGCHC	4 cut(s)	219, 355, 760, 1549
Bsp13I	TCCGGA	1 cut(s)	892
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	9 cut(s)	889, 1383, 1658, 1803, 1933, 2040, 2209, 2330, 2394
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	8 cut(s)	5, 223, 741, 874, 1061, 1662, 1945, 2168
BspANI	GGCC	3 cut(s)	1428, 1944, 2436
BspCNI	CTCAG	6 cut(s)	70, 846, 1138, 1497, 1771, 2383
BspDI	ATCGAT	1 cut(s)	1112
BspEI	TCCGGA	1 cut(s)	892
BspFNI	CGCG	1 cut(s)	1947
BspHI	TCATGA	1 cut(s)	1270
BspLI	GGNNCC	4 cut(s)	233, 1660, 1670, 2020
BspMAI	CTGCAG	1 cut(s)	158
BspMI	ACCTGC	2 cut(s)	1827, 2041
BspPI	GGATC	6 cut(s)	884, 1378, 1653, 1666, 2035, 2204
BsrDI	GCAATG	1 cut(s)	816
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	4 cut(s)	1215, 1294, 1672, 1726
BssECI	CCNNGG	8 cut(s)	226, 782, 1387, 1509, 2213, 2451, 2452, 2453
BssMI	GATC	9 cut(s)	889, 1383, 1658, 1803, 1933, 2040, 2209, 2330, 2394
BssNAI	GTATAC	1 cut(s)	600
BssNI	GRCGYC	1 cut(s)	2459
BssSI	CACGAG	3 cut(s)	341, 354, 1968
BssT1I	CCWWGG	3 cut(s)	226, 782, 1509
Bst1107I	GTATAC	1 cut(s)	600
Bst2BI	CACGAG	3 cut(s)	341, 354, 1968
Bst2UI	CCWGG	2 cut(s)	1389, 2214
Bst4CI	ACNGT	6 cut(s)	151, 907, 2147, 2411, 2507, 2512
Bst6I	CTCTTC	1 cut(s)	326
BstACI	GRCGYC	1 cut(s)	2459
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	4 cut(s)	928, 1278, 1924, 2035
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	7 cut(s)	493, 703, 1086, 1659, 2101, 2590, 2611
BstFNI	CGCG	1 cut(s)	1947
BstH2I	RGCGCY	1 cut(s)	1820
BstHHI	GCGC	4 cut(s)	415, 1819, 1949, 2538
BstKTI	GATC	9 cut(s)	892, 1386, 1661, 1806, 1936, 2043, 2212, 2333, 2397
BstMAI	GTCTC	2 cut(s)	783, 2410
BstMBI	GATC	9 cut(s)	889, 1383, 1658, 1803, 1933, 2040, 2209, 2330, 2394
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 305, 1273, 1532, 2387
BstNI	CCWGG	2 cut(s)	1389, 2214
BstNSI	RCATGY	5 cut(s)	427, 627, 674, 1636, 2491
BstSCI	CCNGG	6 cut(s)	530, 1387, 2212, 2451, 2452, 2538
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	760
BstUI	CGCG	1 cut(s)	1947
BstV1I	GCAGC	4 cut(s)	168, 1513, 2018, 2084
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	4 cut(s)	1383, 1658, 2209, 2394
BstYI	RGATCY	4 cut(s)	1383, 1658, 2209, 2394
BstZ17I	GTATAC	1 cut(s)	600
Bsu15I	ATCGAT	1 cut(s)	1112
BsuI	GTATCC	1 cut(s)	2551
BsuRI	GGCC	3 cut(s)	1428, 1944, 2436
BsuTUI	ATCGAT	1 cut(s)	1112
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	7 cut(s)	493, 703, 1086, 1659, 2101, 2590, 2611
BtsI	GCAGTG	2 cut(s)	1139, 1698
BtsIMutI	CAGTG	5 cut(s)	1139, 1222, 1698, 2152, 2416
BveI	ACCTGC	2 cut(s)	1827, 2041
Cac8I	GCNNGC	4 cut(s)	928, 1278, 1924, 2035
CciI	TCATGA	1 cut(s)	1270
CfoI	GCGC	4 cut(s)	415, 1819, 1949, 2538
Cfr9I	CCCGGG	1 cut(s)	2452
ClaI	ATCGAT	1 cut(s)	1112
CseI	GACGC	1 cut(s)	2467
Csp6I	GTAC	3 cut(s)	361, 2508, 2595
CviQI	GTAC	3 cut(s)	361, 2508, 2595
DpnI	GATC	9 cut(s)	891, 1385, 1660, 1805, 1935, 2042, 2211, 2332, 2396
DpnII	GATC	9 cut(s)	889, 1383, 1658, 1803, 1933, 2040, 2209, 2330, 2394
EaeI	YGGCCR	1 cut(s)	1942
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	2 cut(s)	217, 1547
Eco130I	CCWWGG	3 cut(s)	226, 782, 1509
Eco24I	GRGCYC	3 cut(s)	219, 355, 1549
Eco53kI	GAGCTC	2 cut(s)	217, 1547
Eco57I	CTGAAG	2 cut(s)	269, 1983
Eco88I	CYCGRG	2 cut(s)	236, 2452
EcoICRI	GAGCTC	2 cut(s)	217, 1547
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	1387, 2212
EcoT14I	CCWWGG	3 cut(s)	226, 782, 1509
EcoT22I	ATGCAT	1 cut(s)	1355
EcoT38I	GRGCYC	3 cut(s)	219, 355, 1549
ErhI	CCWWGG	3 cut(s)	226, 782, 1509
FalI	AAGNNNNNCTT	2 cut(s)	2573, 2605
FaqI	GGGAC	2 cut(s)	99, 2470
FauI	CCCGC	2 cut(s)	734, 867
FblI	GTMKAC	2 cut(s)	599, 1791
Fnu4HI	GCNGC	6 cut(s)	157, 223, 1527, 1945, 2007, 2073
FokI	GGATG	7 cut(s)	500, 710, 1093, 1666, 2108, 2597, 2618
FriOI	GRGCYC	3 cut(s)	219, 355, 1549
Fsp4HI	GCNGC	6 cut(s)	157, 223, 1527, 1945, 2007, 2073
FspBI	CTAG	7 cut(s)	129, 783, 912, 1077, 1523, 1536, 2420
GlaI	GCGC	4 cut(s)	414, 1818, 1948, 2537
GluI	GCNGC	6 cut(s)	157, 223, 1527, 1945, 2007, 2073
GsaI	CCCAGC	1 cut(s)	1953
HaeII	RGCGCY	1 cut(s)	1820
HaeIII	GGCC	3 cut(s)	1428, 1944, 2436
HapII	CCGG	5 cut(s)	531, 638, 893, 2453, 2539
HgaI	GACGC	1 cut(s)	2467
HhaI	GCGC	4 cut(s)	415, 1819, 1949, 2538
Hin1I	GRCGYC	1 cut(s)	2459
Hin6I	GCGC	4 cut(s)	413, 1817, 1947, 2536
HinP1I	GCGC	4 cut(s)	413, 1817, 1947, 2536
HindIII	AAGCTT	3 cut(s)	91, 1265, 2379
HinfI	GANTC	8 cut(s)	260, 661, 676, 692, 1024, 1567, 1781, 2479
HpaII	CCGG	5 cut(s)	531, 638, 893, 2453, 2539
HphI	GGTGA	7 cut(s)	139, 163, 491, 953, 2075, 2276, 2482
Hpy166II	GTNNAC	7 cut(s)	361, 600, 758, 997, 1792, 2066, 2405
Hpy188I	TCNGA	7 cut(s)	205, 249, 697, 1029, 1434, 1551, 1911
Hpy188III	TCNNGA	6 cut(s)	238, 893, 1271, 1628, 1970, 2000
Hpy8I	GTNNAC	7 cut(s)	361, 600, 758, 997, 1792, 2066, 2405
HpyAV	CCTTC	7 cut(s)	842, 1144, 1439, 1644, 1740, 1850, 2603
HpyCH4III	ACNGT	6 cut(s)	151, 907, 2147, 2411, 2507, 2512
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 305, 1273, 1532, 2387
Hsp92I	GRCGYC	1 cut(s)	2459
HspAI	GCGC	4 cut(s)	413, 1817, 1947, 2536
Kpn2I	TCCGGA	1 cut(s)	892
Kzo9I	GATC	9 cut(s)	889, 1383, 1658, 1803, 1933, 2040, 2209, 2330, 2394
LmnI	GCTCC	4 cut(s)	111, 1177, 1544, 2018
Lsp1109I	GCAGC	4 cut(s)	168, 1513, 2018, 2084
LweI	GCATC	6 cut(s)	286, 442, 861, 1977, 1993, 2086
MaeI	CTAG	7 cut(s)	129, 783, 912, 1077, 1523, 1536, 2420
MaeIII	GTNAC	6 cut(s)	169, 907, 1696, 2129, 2470, 2501
MalI	GATC	9 cut(s)	891, 1385, 1660, 1805, 1935, 2042, 2211, 2332, 2396
MboI	GATC	9 cut(s)	889, 1383, 1658, 1803, 1933, 2040, 2209, 2330, 2394
MboII	GAAGA	8 cut(s)	117, 302, 305, 343, 956, 1097, 1996, 2171
MfeI	CAATTG	1 cut(s)	1955
MflI	RGATCY	4 cut(s)	1383, 1658, 2209, 2394
MhlI	GDGCHC	4 cut(s)	219, 355, 760, 1549
MluCI	AATT	9 cut(s)	27, 376, 442, 1461, 1498, 1888, 1955, 2516, 2567
MlyI	GAGTC	3 cut(s)	254, 701, 1790
MmeI	TCCRAC	2 cut(s)	228, 675
Mph1103I	ATGCAT	1 cut(s)	1355
MroI	TCCGGA	1 cut(s)	892
MroXI	GAANNNNTTC	1 cut(s)	1673
MseI	TTAA	8 cut(s)	282, 1460, 1490, 1887, 2027, 2295, 2364, 2442
MslI	CAYNNNNRTG	7 cut(s)	428, 669, 972, 1331, 1575, 1811, 1877
MspI	CCGG	5 cut(s)	531, 638, 893, 2453, 2539
MspR9I	CCNGG	6 cut(s)	532, 1389, 2214, 2453, 2454, 2540
MunI	CAATTG	1 cut(s)	1955
Mva1269I	GAATGC	4 cut(s)	718, 783, 811, 1756
MvaI	CCWGG	2 cut(s)	1389, 2214
MvnI	CGCG	1 cut(s)	1947
MwoI	GCNNNNNNNGC	5 cut(s)	11, 305, 1273, 1532, 2387
NciI	CCSGG	4 cut(s)	532, 2453, 2454, 2540
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	9 cut(s)	889, 1383, 1658, 1803, 1933, 2040, 2209, 2330, 2394
NlaIV	GGNNCC	4 cut(s)	233, 1660, 1670, 2020
NmeAIII	GCCGAG	1 cut(s)	1404
NmuCI	GTSAC	5 cut(s)	169, 907, 1696, 2470, 2501
NsiI	ATGCAT	1 cut(s)	1355
NspI	RCATGY	5 cut(s)	427, 627, 674, 1636, 2491
PaeR7I	CTCGAG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	1270
PciI	ACATGT	3 cut(s)	623, 1632, 2487
PctI	GAATGC	4 cut(s)	718, 783, 811, 1756
PdmI	GAANNNNTTC	1 cut(s)	1673
PfeI	GAWTC	5 cut(s)	661, 676, 1024, 1567, 2479
PflMI	CCANNNNNTGG	1 cut(s)	1774
PkrI	GCNGC	6 cut(s)	158, 224, 1528, 1946, 2008, 2074
PleI	GAGTC	3 cut(s)	254, 700, 1789
PpsI	GAGTC	3 cut(s)	254, 700, 1789
PscI	ACATGT	3 cut(s)	623, 1632, 2487
PshBI	ATTAAT	1 cut(s)	2442
Psp124BI	GAGCTC	2 cut(s)	219, 1549
Psp6I	CCWGG	2 cut(s)	1387, 2212
PspFI	CCCAGC	1 cut(s)	1949
PspGI	CCWGG	2 cut(s)	1387, 2212
PspN4I	GGNNCC	4 cut(s)	233, 1660, 1670, 2020
PstI	CTGCAG	1 cut(s)	158
PsuI	RGATCY	4 cut(s)	1383, 1658, 2209, 2394
RsaI	GTAC	3 cut(s)	362, 2509, 2596
RsaNI	GTAC	3 cut(s)	361, 2508, 2595
RseI	CAYNNNNRTG	7 cut(s)	428, 669, 972, 1331, 1575, 1811, 1877
SacI	GAGCTC	2 cut(s)	219, 1549
SaqAI	TTAA	8 cut(s)	282, 1460, 1490, 1887, 2027, 2295, 2364, 2442
SatI	GCNGC	6 cut(s)	157, 223, 1527, 1945, 2007, 2073
Sau3AI	GATC	9 cut(s)	889, 1383, 1658, 1803, 1933, 2040, 2209, 2330, 2394
ScaI	AGTACT	1 cut(s)	2509
SchI	GAGTC	3 cut(s)	254, 701, 1790
ScrFI	CCNGG	6 cut(s)	532, 1389, 2214, 2453, 2454, 2540
SduI	GDGCHC	4 cut(s)	219, 355, 760, 1549
SfaNI	GCATC	6 cut(s)	286, 442, 861, 1977, 1993, 2086
SfcI	CTRYAG	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	236
SlaI	CTCGAG	1 cut(s)	236
SmaI	CCCGGG	1 cut(s)	2454
SmiMI	CAYNNNNRTG	7 cut(s)	428, 669, 972, 1331, 1575, 1811, 1877
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	9 cut(s)	27, 376, 442, 1461, 1498, 1888, 1955, 2516, 2567
SsiI	CCGC	8 cut(s)	5, 223, 741, 874, 1061, 1662, 1945, 2168
SspI	AATATT	1 cut(s)	2085
SspMI	CTAG	7 cut(s)	129, 783, 912, 1077, 1523, 1536, 2420
SstI	GAGCTC	2 cut(s)	219, 1549
StyD4I	CCNGG	6 cut(s)	530, 1387, 2212, 2451, 2452, 2538
StyI	CCWWGG	3 cut(s)	226, 782, 1509
TaaI	ACNGT	6 cut(s)	151, 907, 2147, 2411, 2507, 2512
TaqI	TCGA	9 cut(s)	81, 237, 374, 380, 540, 679, 702, 1112, 1932
TasI	AATT	9 cut(s)	27, 376, 442, 1461, 1498, 1888, 1955, 2516, 2567
TatI	WGTACW	3 cut(s)	360, 2507, 2594
TauI	GCSGC	2 cut(s)	225, 1947
TfiI	GAWTC	5 cut(s)	661, 676, 1024, 1567, 2479
Tru1I	TTAA	8 cut(s)	282, 1460, 1490, 1887, 2027, 2295, 2364, 2442
Tru9I	TTAA	8 cut(s)	282, 1460, 1490, 1887, 2027, 2295, 2364, 2442
TscAI	CASTG	5 cut(s)	1146, 1222, 1705, 2152, 2416
TseFI	GTSAC	5 cut(s)	169, 907, 1696, 2470, 2501
TseI	GCWGC	4 cut(s)	156, 1526, 2006, 2072
Tsp45I	GTSAC	5 cut(s)	169, 907, 1696, 2470, 2501
TspGWI	ACGGA	3 cut(s)	157, 1507, 2108
TspMI	CCCGGG	1 cut(s)	2452
TspRI	CASTG	5 cut(s)	1146, 1222, 1705, 2152, 2416
Van91I	CCANNNNNTGG	1 cut(s)	1774
VneI	GTGCAC	1 cut(s)	756
VspI	ATTAAT	1 cut(s)	2442
XapI	RAATTY	5 cut(s)	27, 376, 1498, 2516, 2567
XceI	RCATGY	5 cut(s)	427, 627, 674, 1636, 2491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2582
XhoI	CTCGAG	1 cut(s)	236
XmaI	CCCGGG	1 cut(s)	2452
XmaJI	CCTAGG	1 cut(s)	782
XmiI	GTMKAC	2 cut(s)	599, 1791
XmnI	GAANNNNTTC	1 cut(s)	1673
XspI	CTAG	7 cut(s)	129, 783, 912, 1077, 1523, 1536, 2420
ZrmI	AGTACT	1 cut(s)	2509
Zsp2I	ATGCAT	1 cut(s)	1355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.