FvH4_6g30801

Epidermal growth factor-like domain.

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
23943266 .. 23945290
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30801.t1

Sequence Viewer

Length: 408 bp
ATGGCAGATATTGTTTGTTCACTTCCTAAGGTAAATTGTGGGCAAGGAAAGTGCAGGTATTCTAAGGACTCTAGTCATTCAATATTTGTGCCTGGTATCGGACCTGTGGGTTTTGACTGCGACTGTAACCCTAGTTGGAAAAAGATTCAGATTGGCCCCTCTAATTATCCATCTTGTCTCGTTCCAGACTGCACTATTGATTTTGGATGTAATTCATCATCTCCCTCACCTCAACCTGCTCCTTTCTCTCTGCCATCGTTAGGGCAAGAAGACTTGTCCCTGGTGTTATTGACTCTTTCAGTTTCTGTGCAGCAGCCATTCCAAAGTCAGAAGAAGATGTCTTCCTCAAAGGCAGCTGTTCAAGATGTCAATGCCTTATCTCGGTCCTCTAGTTTACCCTGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.37

Weight (kDa)

6.51

Isoelectric Point (pI)

77.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017338)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30801 FvH4_6g30802
malus_domestica MD17G1198900.v1.1
prunus_persica Prupe.3G075500_v2.0.a1
pyrus_communis pycom06g09320
rosa_laevigata RLG00000019637
rosa_roxburghii Rroxscaffold_2G00107280
rosa_rugosa Rorug02G0339800
rosa_samantha Rh2AG388600 Rh2BG396300 Rh2CG376000 Rh2DG411400
rosa_wichuraiana Rw2G031840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 45, 244
AfiI CCNNNNNNNGG 3 cut(s) 98, 260, 381
AgsI TTSAA 2 cut(s) 81, 362
AjnI CCWGG 3 cut(s) 91, 279, 398
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 310, 313, 353
AspS9I GGNCC 3 cut(s) 101, 155, 384
AsuHPI GGTGA 1 cut(s) 219
AvaII GGWCC 2 cut(s) 101, 384
AxyI CCTNAGG 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 276, 333
BbvI GCAGC 3 cut(s) 322, 325, 365
BccI CCATC 2 cut(s) 178, 262
BciT130I CCWGG 3 cut(s) 93, 281, 400
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 3 cut(s) 72, 132, 390
BfuAI ACCTGC 2 cut(s) 45, 244
BisI GCNGC 3 cut(s) 311, 314, 354
BlsI GCNGC 3 cut(s) 312, 315, 355
Bme1390I CCNGG 3 cut(s) 93, 281, 400
Bme18I GGWCC 2 cut(s) 101, 384
BmgT120I GGNCC 3 cut(s) 101, 155, 384
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 3 cut(s) 93, 281, 400
BoxI GACNNNNGTC 1 cut(s) 72
BpiI GAAGAC 2 cut(s) 276, 333
BsaJI CCNNGG 3 cut(s) 279, 398, 399
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 260, 381
Bse21I CCTNAGG 1 cut(s) 27
BseBI CCWGG 3 cut(s) 93, 281, 400
BseDI CCNNGG 3 cut(s) 279, 398, 399
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 3 cut(s) 98, 260, 381
BseXI GCAGC 3 cut(s) 322, 325, 365
BsgI GTGCAG 3 cut(s) 73, 175, 329
BshFI GGCC 1 cut(s) 156
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 3 cut(s) 98, 260, 381
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 1 cut(s) 156
BspANI GGCC 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 157
BspMI ACCTGC 2 cut(s) 45, 244
BssECI CCNNGG 3 cut(s) 279, 398, 399
Bst2UI CCWGG 3 cut(s) 93, 281, 400
Bst4CI ACNGT 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 27, 63
BstF5I GGATG 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 182
BstNI CCWGG 3 cut(s) 93, 281, 400
BstPAI GACNNNNGTC 1 cut(s) 72
BstSCI CCNGG 3 cut(s) 91, 279, 398
BstV1I GCAGC 3 cut(s) 322, 325, 365
BstV2I GAAGAC 2 cut(s) 276, 333
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 212
BveI ACCTGC 2 cut(s) 45, 244
CaiI CAGNNNCTG 1 cut(s) 305
Cfr13I GGNCC 3 cut(s) 101, 155, 384
CviJI RGCY 3 cut(s) 156, 316, 356
CviKI_1 RGCY 3 cut(s) 156, 316, 356
DdeI CTNAG 2 cut(s) 27, 63
Eco47I GGWCC 2 cut(s) 101, 384
Eco81I CCTNAGG 1 cut(s) 27
EcoRII CCWGG 3 cut(s) 91, 279, 398
FaqI GGGAC 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 311, 314, 354
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 3 cut(s) 311, 314, 354
FspBI CTAG 3 cut(s) 72, 132, 390
GluI GCNGC 3 cut(s) 311, 314, 354
HaeIII GGCC 1 cut(s) 156
HinfI GANTC 3 cut(s) 68, 145, 292
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 20, 395
Hpy188I TCNGA 3 cut(s) 101, 150, 330
Hpy188III TCNNGA 2 cut(s) 185, 362
Hpy8I GTNNAC 2 cut(s) 20, 395
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 54, 192, 310
HpyF3I CTNAG 2 cut(s) 27, 63
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 9 cut(s) 40, 78, 105, 117, 198, 249, 266, 293, 385
Lsp1109I GCAGC 3 cut(s) 322, 325, 365
MaeI CTAG 3 cut(s) 72, 132, 390
MaeIII GTNAC 1 cut(s) 125
MboII GAAGA 4 cut(s) 281, 333, 343, 346
MluCI AATT 3 cut(s) 34, 163, 211
MlyI GAGTC 2 cut(s) 62, 286
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 5 cut(s) 169, 235, 240, 355, 397
MseI TTAA 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 356
MspR9I CCNGG 3 cut(s) 93, 281, 400
MvaI CCWGG 3 cut(s) 93, 281, 400
NlaIV GGNNCC 1 cut(s) 157
PasI CCCWGGG 1 cut(s) 399
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 3 cut(s) 312, 315, 355
PleI GAGTC 2 cut(s) 62, 286
PpsI GAGTC 2 cut(s) 62, 286
PshAI GACNNNNGTC 1 cut(s) 72
Psp6I CCWGG 3 cut(s) 91, 279, 398
PspGI CCWGG 3 cut(s) 91, 279, 398
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 3 cut(s) 101, 155, 384
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 356
SaqAI TTAA 1 cut(s) 406
SatI GCNGC 3 cut(s) 311, 314, 354
Sau96I GGNCC 3 cut(s) 101, 155, 384
SchI GAGTC 2 cut(s) 62, 286
ScrFI CCNGG 3 cut(s) 93, 281, 400
SetI ASST 6 cut(s) 33, 59, 106, 232, 238, 358
SinI GGWCC 2 cut(s) 101, 384
Sse9I AATT 3 cut(s) 34, 163, 211
SspI AATATT 1 cut(s) 84
SspMI CTAG 3 cut(s) 72, 132, 390
StyD4I CCNGG 3 cut(s) 91, 279, 398
TaaI ACNGT 1 cut(s) 125
TaqII GACCGA 1 cut(s) 372
TasI AATT 3 cut(s) 34, 163, 211
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 406
Tru9I TTAA 1 cut(s) 406
TseI GCWGC 3 cut(s) 310, 313, 353
TspDTI ATGAA 1 cut(s) 204
VpaK11BI GGWCC 2 cut(s) 101, 384
XspI CTAG 3 cut(s) 72, 132, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.