MD17G1198900.v1.1

Epidermal growth factor-like domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0017338
Physical Location & Seq
Forward (+)
23944830 .. 23947221
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1198900.v1.1.491

Sequence Viewer

Length: 501 bp
ATGATCATGAAAACTTTCAGTTTGAATTTCAATCTAATTTATTTTCATTATCTTTTTCTCCTTGCCCTCTTCACCTTCTACTCTACAATCGGTTCCACACAGAAGATTCCAATTCCATCAGACCCAATTGGAGATATTGTGTGTGAAGTGGTACATTGTGGGCAAGGAGTATGCAAGGTTTCTAATGAGACATTGCTTGGTTTTGATTGCGAGTGTAATCCTGGTTGGAAGAAGATTCCGATTGGTCCCTTTACCTATCCCGCTTGTGTTATTCCAAACTATCGGTATTTTTTGTCTTCTGGGTTTTGGCTGGCATCGTGGAGTTTGTCGACAATGTCGTGGCGGATGAAGGTGATGGTCGAGCGAAGAGCGAGATTGGGAATCGAGGAAGTTGAGGATCTAAGTAGAGGAGAAGCGCTGCCTTTCGATAGCGAGCTCGGCGATAAAGCTGGGGGCGACACAAATCTTCAAAGATCTTTGATAGAGATGAAGGGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.68

Weight (kDa)

5.68

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017338)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30801 FvH4_6g30802
malus_domestica MD17G1198900.v1.1
prunus_persica Prupe.3G075500_v2.0.a1
pyrus_communis pycom06g09320
rosa_laevigata RLG00000019637
rosa_roxburghii Rroxscaffold_2G00107280
rosa_rugosa Rorug02G0339800
rosa_samantha Rh2AG388600 Rh2BG396300 Rh2CG376000 Rh2DG411400
rosa_wichuraiana Rw2G031840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 329
AciI CCGC 2 cut(s) 261, 343
AclWI GGATC 1 cut(s) 405
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 1 cut(s) 153
AfeI AGCGCT 1 cut(s) 417
AgsI TTSAA 3 cut(s) 25, 31, 470
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 436, 449
AluI AGCT 2 cut(s) 436, 449
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 405
Aor51HI AGCGCT 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 418
ApoI RAATTY 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 64, 364
AvaII GGWCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 405
BccI CCATC 2 cut(s) 124, 349
BciT130I CCWGG 1 cut(s) 222
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 419
BglII AGATCT 1 cut(s) 473
BisI GCNGC 1 cut(s) 419
BlsI GCNGC 1 cut(s) 420
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 2 cut(s) 94, 247
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bse3DI GCAATG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 423
BseXI GCAGC 1 cut(s) 405
BseYI CCCAGC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 438
BslFI GGGAC 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 3 cut(s) 3, 397, 473
BspACI CCGC 2 cut(s) 261, 343
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 2 cut(s) 94, 247
BspPI GGATC 1 cut(s) 405
BspQI GCTCTTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 191
BssMI GATC 3 cut(s) 3, 397, 473
Bst2UI CCWGG 1 cut(s) 222
Bst6I CTCTTC 2 cut(s) 74, 361
BstC8I GCNNGC 2 cut(s) 312, 434
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 351
BstH2I RGCGCY 1 cut(s) 419
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 3 cut(s) 6, 400, 476
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 3 cut(s) 3, 397, 473
BstMWI GCNNNNNNNGC 1 cut(s) 438
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 405
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 2 cut(s) 397, 473
BstYI RGATCY 2 cut(s) 397, 473
BtsCI GGATG 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 312, 434
CciI TCATGA 1 cut(s) 6
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 7
CviJI RGCY 3 cut(s) 310, 436, 449
CviKI_1 RGCY 3 cut(s) 310, 436, 449
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 401
DpnI GATC 3 cut(s) 5, 399, 475
DpnII GATC 3 cut(s) 3, 397, 473
Eam1104I CTCTTC 2 cut(s) 74, 361
EarI CTCTTC 2 cut(s) 74, 361
EciI GGCGGA 1 cut(s) 358
Ecl136II GAGCTC 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 245
Eco47III AGCGCT 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 438
FaeI CATG 1 cut(s) 10
FaiI YATR 2 cut(s) 8, 172
FaqI GGGAC 1 cut(s) 231
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 268
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 419
FokI GGATG 1 cut(s) 358
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 1 cut(s) 419
GlaI GCGC 1 cut(s) 417
GluI GCNGC 1 cut(s) 419
GsaI CCCAGC 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 419
HhaI GCGC 1 cut(s) 418
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 3 cut(s) 106, 235, 381
HphI GGTGA 2 cut(s) 64, 364
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 2 cut(s) 121, 240
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 3 cut(s) 85, 343, 484
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 438
HpyF3I CTNAG 1 cut(s) 401
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 397, 473
LguI GCTCTTC 1 cut(s) 361
LpnPI CCDG 5 cut(s) 207, 234, 285, 296, 435
Lsp1109I GCAGC 1 cut(s) 405
LweI GCATC 1 cut(s) 323
MalI GATC 3 cut(s) 5, 399, 475
MboI GATC 3 cut(s) 3, 397, 473
MboII GAAGA 7 cut(s) 61, 115, 241, 244, 288, 378, 458
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 2 cut(s) 397, 473
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 4 cut(s) 25, 36, 111, 126
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 5 cut(s) 77, 379, 388, 401, 488
MroXI GAANNNNTTC 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 438
NdeII GATC 3 cut(s) 3, 397, 473
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 94, 247
NmeAIII GCCGAG 1 cut(s) 417
PagI TCATGA 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 3 cut(s) 106, 235, 381
PflFI GACNNNGTC 1 cut(s) 334
PkrI GCNGC 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 2 cut(s) 94, 247
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 2 cut(s) 397, 473
PsyI GACNNNGTC 1 cut(s) 334
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacI GAGCTC 1 cut(s) 438
SalI GTCGAC 1 cut(s) 328
SapI GCTCTTC 1 cut(s) 361
SatI GCNGC 1 cut(s) 419
Sau3AI GATC 3 cut(s) 3, 397, 473
Sau96I GGNCC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 438
SetI ASST 6 cut(s) 77, 180, 257, 354, 438, 451
SfaNI GCATC 1 cut(s) 323
SinI GGWCC 1 cut(s) 245
Sse9I AATT 4 cut(s) 25, 36, 111, 126
SsiI CCGC 2 cut(s) 261, 343
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 1 cut(s) 220
TaqI TCGA 4 cut(s) 329, 360, 384, 426
TasI AATT 4 cut(s) 25, 36, 111, 126
TfiI GAWTC 3 cut(s) 106, 235, 381
TseI GCWGC 1 cut(s) 418
TspDTI ATGAA 3 cut(s) 23, 35, 362
Tth111I GACNNNGTC 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.