Rorug02G0339800

Epidermal growth factor-like domain.

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
42271872 .. 42272078
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0339800.1

Sequence Viewer

Length: 207 bp
ATGTCAGAACTCTTGCTACTTCGTTTTCTACCATCACCTTTAAACATGTGTTTAGAGAGGCAAATTTTACTGCTGATTCTGTTACTAACCTTGGCCATTCTCACTCGAATCGTATTTGGTGGGTTAATTCGCTTTCCACCTGCGGTCTCTAGAGCCATTTTGTTTGACTCTGTAAACTGTGGAGGCCCGCGTGGCCTAAGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.49

Weight (kDa)

10.25

Isoelectric Point (pI)

66.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017338)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30801 FvH4_6g30802
malus_domestica MD17G1198900.v1.1
prunus_persica Prupe.3G075500_v2.0.a1
pyrus_communis pycom06g09320
rosa_laevigata RLG00000019637
rosa_roxburghii Rroxscaffold_2G00107280
rosa_rugosa Rorug02G0339800
rosa_samantha Rh2AG388600 Rh2BG396300 Rh2CG376000 Rh2DG411400
rosa_wichuraiana Rw2G031840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 148
AccII CGCG 1 cut(s) 190
AciI CCGC 2 cut(s) 143, 188
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 1 cut(s) 63
AflIII ACRYGT 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 151
AoxI GGCC 3 cut(s) 93, 184, 193
ApoI RAATTY 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 27
BalI TGGCCA 1 cut(s) 95
BccI CCATC 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 190
BshFI GGCC 3 cut(s) 95, 186, 195
BsmAI GTCTC 1 cut(s) 151
BsnI GGCC 3 cut(s) 95, 186, 195
Bso31I GGTCTC 1 cut(s) 151
BspACI CCGC 2 cut(s) 143, 188
BspANI GGCC 3 cut(s) 95, 186, 195
BspFNI CGCG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 49
BstUI CGCG 1 cut(s) 190
BsuRI GGCC 3 cut(s) 95, 186, 195
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 185
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 95, 155, 186, 195
CviKI_1 RGCY 4 cut(s) 95, 155, 186, 195
DdeI CTNAG 1 cut(s) 197
DraI TTTAAA 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 49
FaiI YATR 1 cut(s) 47
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 195
FspBI CTAG 1 cut(s) 150
HaeIII GGCC 3 cut(s) 95, 186, 195
Hin1II CATG 1 cut(s) 49
HinfI GANTC 3 cut(s) 76, 108, 167
HphI GGTGA 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 150
Hpy8I GTNNAC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 1 cut(s) 49
LpnPI CCDG 1 cut(s) 153
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 2 cut(s) 63, 126
MluNI TGGCCA 1 cut(s) 95
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 2 cut(s) 51, 176
Mox20I TGGCCA 1 cut(s) 95
MscI TGGCCA 1 cut(s) 95
MseI TTAA 3 cut(s) 41, 125, 205
Msp20I TGGCCA 1 cut(s) 95
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 192
NlaIII CATG 1 cut(s) 49
NspI RCATGY 1 cut(s) 49
PaqCI CACCTGC 1 cut(s) 148
PciI ACATGT 1 cut(s) 45
PfeI GAWTC 2 cut(s) 76, 108
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PscI ACATGT 1 cut(s) 45
PspPI GGNCC 1 cut(s) 185
PsrI GAACNNNNNNTAC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 41, 125, 205
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 161
SetI ASST 3 cut(s) 40, 92, 142
SfiI GGCCNNNNNGGCC 1 cut(s) 192
SgeI CNNG 9 cut(s) 25, 58, 103, 117, 152, 162, 199, 201, 203
Sse9I AATT 2 cut(s) 63, 126
SsiI CCGC 2 cut(s) 143, 188
SspMI CTAG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 106
TasI AATT 2 cut(s) 63, 126
TfiI GAWTC 2 cut(s) 76, 108
Tru1I TTAA 3 cut(s) 41, 125, 205
Tru9I TTAA 3 cut(s) 41, 125, 205
XapI RAATTY 1 cut(s) 63
XbaI TCTAGA 1 cut(s) 149
XceI RCATGY 1 cut(s) 49
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.