Rh2CG376000

Epidermal growth factor-like domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017338
Physical Location & Seq
Reverse (-)
51141578 .. 51144134
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG376000.1

Sequence Viewer

Length: 510 bp
ATGGCAGATATTGTTTGTTTAGTTCCAGGGGTAAACTGTGCGCAAGGAAAATGCAAGTATTCTAATGACTCAAGTCACTCAATATATGTGCCTGTTCTCGGACGTGTGGGTTTTGACTGCGACTGTAACCCTGGTTGGAAAAAGATTCAGATCGGCCCCTTTACCTATCCATCTTGTCTCATTCCAGACTGCACTGTTAATGTTGGATGTGATTTATCTCCCCCACAACCTCCTCCTTTCCCTCCGCCACCGGTAATACCACAATGTGCACTTGTTTGGTGTGGAGACGGAACCTGCATAGCCAACGGCCCTAGTGGATACATATGCCAATGCAATGAAGGCACATTGAACATGTTGGATAATCCACAGTTAGCATGCTTGAAAACATGCGCTTTTGGAGGAGACTGCAAGAAGCTTGGCTTCCCATCCGATGCCAAATCAAATGCTCCAAGCTCTCAAACAATTGTAACTATGATGCTGTTGACATCAATCTTTCTGACATGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

17.94

Weight (kDa)

5.06

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017338)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30801 FvH4_6g30802
malus_domestica MD17G1198900.v1.1
prunus_persica Prupe.3G075500_v2.0.a1
pyrus_communis pycom06g09320
rosa_laevigata RLG00000019637
rosa_roxburghii Rroxscaffold_2G00107280
rosa_rugosa Rorug02G0339800
rosa_samantha Rh2AG388600 Rh2BG396300 Rh2CG376000 Rh2DG411400
rosa_wichuraiana Rw2G031840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 302
AciI CCGC 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 98
AflIII ACRYGT 2 cut(s) 103, 351
AgeI ACCGGT 1 cut(s) 250
AgsI TTSAA 2 cut(s) 349, 382
AjiI CACGTC 1 cut(s) 104
AjnI CCWGG 2 cut(s) 25, 130
AluBI AGCT 2 cut(s) 415, 453
AluI AGCT 2 cut(s) 415, 453
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 3 cut(s) 182, 279, 396
Alw44I GTGCAC 1 cut(s) 267
AoxI GGCC 2 cut(s) 154, 307
ApaLI GTGCAC 1 cut(s) 267
AsiGI ACCGGT 1 cut(s) 250
AspLEI GCGC 2 cut(s) 43, 392
AspS9I GGNCC 2 cut(s) 155, 308
BaeGI GKGCMC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 271
BccI CCATC 2 cut(s) 178, 433
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 2 cut(s) 27, 132
BciVI GTATCC 1 cut(s) 311
BcoDI GTCTC 3 cut(s) 182, 279, 396
BfaI CTAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 302
BfuI GTATCC 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 27, 132
BmgBI CACGTC 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 155, 308
BmiI GGNNCC 2 cut(s) 157, 292
BmrFI CCNGG 2 cut(s) 27, 132
BmsI GCATC 2 cut(s) 421, 465
BoxI GACNNNNGTC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 26, 130
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 340
Bse8I GATNNNNATC 1 cut(s) 149
BseBI CCWGG 2 cut(s) 27, 132
BseDI CCNNGG 2 cut(s) 26, 130
BseGI GGATG 2 cut(s) 212, 425
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 340
BseRI GAGGAG 2 cut(s) 222, 414
BseSI GKGCMC 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 175
BshFI GGCC 2 cut(s) 156, 309
BshTI ACCGGT 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 3 cut(s) 182, 279, 396
BsmBI CGTCTC 1 cut(s) 279
BsnI GGCC 2 cut(s) 156, 309
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 245
BspANI GGCC 2 cut(s) 156, 309
BspLI GGNNCC 2 cut(s) 157, 292
BspMI ACCTGC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 340
BsrFI RCCGGY 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 26, 130
BssMI GATC 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 27, 132
Bst4CI ACNGT 4 cut(s) 38, 125, 196, 369
BstC8I GCNNGC 1 cut(s) 376
BstF5I GGATG 2 cut(s) 212, 425
BstHHI GCGC 2 cut(s) 43, 392
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 3 cut(s) 182, 279, 396
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNI CCWGG 2 cut(s) 27, 132
BstNSI RCATGY 3 cut(s) 355, 378, 390
BstPAI GACNNNNGTC 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 25, 130
BstSLI GKGCMC 1 cut(s) 271
BsuI GTATCC 1 cut(s) 311
BsuRI GGCC 2 cut(s) 156, 309
BtrI CACGTC 1 cut(s) 104
BtsCI GGATG 2 cut(s) 212, 425
BtsIMutI CAGTG 1 cut(s) 192
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 2 cut(s) 43, 392
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 155, 308
CspAI ACCGGT 1 cut(s) 250
CviAII CATG 4 cut(s) 352, 375, 387, 501
CviJI RGCY 6 cut(s) 156, 302, 309, 415, 420, 453
CviKI_1 RGCY 6 cut(s) 156, 302, 309, 415, 420, 453
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
DraIII CACNNNGTG 1 cut(s) 266
EciI GGCGGA 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 25, 130
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 4 cut(s) 355, 378, 390, 504
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FatI CATG 4 cut(s) 351, 374, 386, 500
FauNDI CATATG 1 cut(s) 323
FokI GGATG 2 cut(s) 219, 412
FspBI CTAG 1 cut(s) 312
FspI TGCGCA 1 cut(s) 42
GlaI GCGC 2 cut(s) 42, 391
HaeIII GGCC 2 cut(s) 156, 309
HapII CCGG 1 cut(s) 251
HhaI GCGC 2 cut(s) 43, 392
Hin1II CATG 4 cut(s) 355, 378, 390, 504
Hin6I GCGC 2 cut(s) 41, 390
HinP1I GCGC 2 cut(s) 41, 390
HincII GTYRAC 1 cut(s) 483
HindII GTYRAC 1 cut(s) 483
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 2 cut(s) 68, 145
HpaII CCGG 1 cut(s) 251
Hpy166II GTNNAC 3 cut(s) 34, 269, 483
Hpy188I TCNGA 4 cut(s) 101, 150, 430, 498
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 3 cut(s) 34, 269, 483
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 4 cut(s) 38, 125, 196, 369
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 6 cut(s) 54, 192, 269, 297, 333, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 4 cut(s) 355, 378, 390, 504
HspAI GCGC 2 cut(s) 41, 390
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 8 cut(s) 12, 39, 105, 117, 144, 198, 264, 307
LweI GCATC 2 cut(s) 421, 465
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 3 cut(s) 74, 125, 466
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MfeI CAATTG 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 1 cut(s) 462
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 3 cut(s) 116, 184, 336
MnlI CCTC 4 cut(s) 240, 243, 252, 392
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 27, 132
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 2 cut(s) 27, 132
MwoI GCNNNNNNNGC 1 cut(s) 339
NdeI CATATG 1 cut(s) 323
NdeII GATC 1 cut(s) 150
NlaIII CATG 4 cut(s) 355, 378, 390, 504
NlaIV GGNNCC 2 cut(s) 157, 292
NmuCI GTSAC 1 cut(s) 74
NsbI TGCGCA 1 cut(s) 42
NspI RCATGY 3 cut(s) 355, 378, 390
PaeI GCATGC 1 cut(s) 378
PciI ACATGT 1 cut(s) 351
PfeI GAWTC 1 cut(s) 145
PinAI ACCGGT 1 cut(s) 250
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PscI ACATGT 1 cut(s) 351
PshAI GACNNNNGTC 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 25, 130
PspGI CCWGG 2 cut(s) 25, 130
PspN4I GGNNCC 2 cut(s) 157, 292
PspPI GGNCC 2 cut(s) 155, 308
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 155, 308
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 27, 132
SduI GDGCHC 1 cut(s) 271
SetI ASST 6 cut(s) 106, 167, 232, 296, 417, 455
SfaNI GCATC 2 cut(s) 421, 465
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SphI GCATGC 1 cut(s) 378
Sse9I AATT 1 cut(s) 462
SsiI CCGC 1 cut(s) 245
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 25, 130
TaaI ACNGT 4 cut(s) 38, 125, 196, 369
TaiI ACGT 1 cut(s) 106
TasI AATT 1 cut(s) 462
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 351
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 1 cut(s) 199
VneI GTGCAC 1 cut(s) 267
XceI RCATGY 3 cut(s) 355, 378, 390
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.