Rh2DG411400

Epidermal growth factor-like domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017338
Physical Location & Seq
Reverse (-)
59667347 .. 59670035
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG411400.1

Sequence Viewer

Length: 606 bp
ATGGAAAGTCTCACTCCTACTCATCTTCTTCTTCTTCTCTTTACTCTCTTCACCTTCATTGCCACAATCAGTTGTACAGAGTCGATATCAAATCCAATACAAGACGATATATACGATATTGTTTGTTTAGTTCCAGGGGTAAACTGTGCGCAAGGAAAATGCAAGTATTCTAATGACTCAAGTCACTCAATATATGTGCCTCTTCTCGGATGTGCTGTGGGTTTTGACTGCGACTGTAACCCTGGTTGGAAAAAGATTCAGATCGGCCCCTTTACCTATCCATCTTGTCTCATTCCAGACTGCACTGTTAATGTTGGATGTGATTTATCTCCCCCACAACCTCCTCCTTTCCCTCCGCCACCGGTAATACCACAATGTGCACTTGTTTGGTGTGGAGACGGAACCTGCATAGCCAACGGGCCTAGTGGATACATATGCCAATGCAATGAAGGCACATTGAACATGTTGGATAATCCACAGTTAGCATGCTTGAAAACATGCGCTTTTGGAGGAGACTGCAAGAAGCTTGGCTTCCCATCCGATGCCAAATCAAATGCTCCAAGCTCTCAAACAATTGGTAAGTCGTTTCGGCGTAAAAAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.55

Weight (kDa)

5.56

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017338)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30801 FvH4_6g30802
malus_domestica MD17G1198900.v1.1
prunus_persica Prupe.3G075500_v2.0.a1
pyrus_communis pycom06g09320
rosa_laevigata RLG00000019637
rosa_roxburghii Rroxscaffold_2G00107280
rosa_rugosa Rorug02G0339800
rosa_samantha Rh2AG388600 Rh2BG396300 Rh2CG376000 Rh2DG411400
rosa_wichuraiana Rw2G031840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 413
AciI CCGC 1 cut(s) 356
AdeI CACNNNGTG 1 cut(s) 377
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 462
AgeI ACCGGT 1 cut(s) 361
AgsI TTSAA 2 cut(s) 460, 493
AjnI CCWGG 2 cut(s) 133, 241
AluBI AGCT 2 cut(s) 526, 564
AluI AGCT 2 cut(s) 526, 564
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 4 cut(s) 14, 293, 390, 507
Alw44I GTGCAC 1 cut(s) 378
AoxI GGCC 2 cut(s) 265, 419
ApaLI GTGCAC 1 cut(s) 378
AsiGI ACCGGT 1 cut(s) 361
AspLEI GCGC 2 cut(s) 151, 503
AspS9I GGNCC 2 cut(s) 266, 419
AsuHPI GGTGA 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 382
BccI CCATC 2 cut(s) 289, 544
BciT130I CCWGG 2 cut(s) 135, 243
BciVI GTATCC 1 cut(s) 422
BcoDI GTCTC 4 cut(s) 14, 293, 390, 507
BfaI CTAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 413
BfuI GTATCC 1 cut(s) 422
Bme1390I CCNGG 2 cut(s) 135, 243
BmgT120I GGNCC 2 cut(s) 266, 419
BmiI GGNNCC 2 cut(s) 268, 403
BmrFI CCNGG 2 cut(s) 135, 243
BmsI GCATC 1 cut(s) 532
BoxI GACNNNNGTC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 134, 241
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 361
Bse3DI GCAATG 2 cut(s) 57, 451
Bse8I GATNNNNATC 1 cut(s) 260
BseBI CCWGG 2 cut(s) 135, 243
BseDI CCNNGG 2 cut(s) 134, 241
BseGI GGATG 3 cut(s) 215, 323, 536
BseJI GATNNNNATC 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 2 cut(s) 57, 451
BseRI GAGGAG 2 cut(s) 333, 525
BseSI GKGCMC 1 cut(s) 382
BsgI GTGCAG 1 cut(s) 286
BshFI GGCC 2 cut(s) 267, 421
BshTI ACCGGT 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 382
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 4 cut(s) 14, 293, 390, 507
BsmBI CGTCTC 1 cut(s) 390
BsnI GGCC 2 cut(s) 267, 421
Bsp1286I GDGCHC 1 cut(s) 382
Bsp1407I TGTACA 1 cut(s) 74
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 1 cut(s) 356
BspANI GGCC 2 cut(s) 267, 421
BspLI GGNNCC 2 cut(s) 268, 403
BspMI ACCTGC 1 cut(s) 413
BsrDI GCAATG 2 cut(s) 57, 451
BsrFI RCCGGY 1 cut(s) 361
BsrGI TGTACA 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 134, 241
BssMI GATC 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 135, 243
Bst4CI ACNGT 4 cut(s) 146, 236, 307, 480
Bst6I CTCTTC 2 cut(s) 53, 207
BstAUI TGTACA 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 487
BstF5I GGATG 3 cut(s) 215, 323, 536
BstHHI GCGC 2 cut(s) 151, 503
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 4 cut(s) 14, 293, 390, 507
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 450
BstNI CCWGG 2 cut(s) 135, 243
BstNSI RCATGY 3 cut(s) 466, 489, 501
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 133, 241
BstSLI GKGCMC 1 cut(s) 382
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 2 cut(s) 267, 421
BtsCI GGATG 3 cut(s) 215, 323, 536
BtsIMutI CAGTG 1 cut(s) 303
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 1 cut(s) 487
CfoI GCGC 2 cut(s) 151, 503
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 266, 419
Csp6I GTAC 1 cut(s) 75
CspAI ACCGGT 1 cut(s) 361
CviAII CATG 3 cut(s) 463, 486, 498
CviJI RGCY 6 cut(s) 267, 413, 421, 526, 531, 564
CviKI_1 RGCY 6 cut(s) 267, 413, 421, 526, 531, 564
CviQI GTAC 1 cut(s) 75
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
DraIII CACNNNGTG 1 cut(s) 377
Eam1104I CTCTTC 2 cut(s) 53, 207
EarI CTCTTC 2 cut(s) 53, 207
EciI GGCGGA 1 cut(s) 345
Eco32I GATATC 1 cut(s) 87
EcoRII CCWGG 2 cut(s) 133, 241
EcoRV GATATC 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 390
FaeI CATG 3 cut(s) 466, 489, 501
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 3 cut(s) 462, 485, 497
FauNDI CATATG 1 cut(s) 434
FokI GGATG 3 cut(s) 222, 330, 523
FspBI CTAG 1 cut(s) 423
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 2 cut(s) 150, 502
HaeIII GGCC 2 cut(s) 267, 421
HapII CCGG 1 cut(s) 362
HhaI GCGC 2 cut(s) 151, 503
Hin1II CATG 3 cut(s) 466, 489, 501
Hin6I GCGC 2 cut(s) 149, 501
HinP1I GCGC 2 cut(s) 149, 501
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 3 cut(s) 80, 176, 256
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 142, 380
Hpy188I TCNGA 3 cut(s) 209, 261, 541
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 2 cut(s) 142, 380
HpyAV CCTTC 2 cut(s) 64, 443
HpyCH4III ACNGT 4 cut(s) 146, 236, 307, 480
HpyCH4V TGCA 6 cut(s) 162, 303, 380, 408, 444, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 450
Hsp92II CATG 3 cut(s) 466, 489, 501
HspAI GCGC 2 cut(s) 149, 501
Kzo9I GATC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 562
LpnPI CCDG 7 cut(s) 120, 147, 228, 255, 309, 375, 418
LweI GCATC 1 cut(s) 532
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 182, 236
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 6 cut(s) 17, 20, 23, 26, 40, 194
MfeI CAATTG 1 cut(s) 573
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 1 cut(s) 573
MlyI GAGTC 2 cut(s) 89, 170
MmeI TCCRAC 3 cut(s) 227, 295, 447
MnlI CCTC 5 cut(s) 210, 351, 354, 363, 503
MseI TTAA 2 cut(s) 309, 604
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 135, 243
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 2 cut(s) 135, 243
MwoI GCNNNNNNNGC 1 cut(s) 450
NdeI CATATG 1 cut(s) 434
NdeII GATC 1 cut(s) 261
NlaIII CATG 3 cut(s) 466, 489, 501
NlaIV GGNNCC 2 cut(s) 268, 403
NmuCI GTSAC 1 cut(s) 182
NsbI TGCGCA 1 cut(s) 150
NspI RCATGY 3 cut(s) 466, 489, 501
PaeI GCATGC 1 cut(s) 489
PciI ACATGT 1 cut(s) 462
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 361
PleI GAGTC 2 cut(s) 88, 170
PpsI GAGTC 2 cut(s) 88, 170
PscI ACATGT 1 cut(s) 462
PshAI GACNNNNGTC 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 133, 241
PspGI CCWGG 2 cut(s) 133, 241
PspN4I GGNNCC 2 cut(s) 268, 403
PspPI GGNCC 2 cut(s) 266, 419
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 309, 604
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 2 cut(s) 266, 419
SchI GAGTC 2 cut(s) 89, 170
ScrFI CCNGG 2 cut(s) 135, 243
SduI GDGCHC 1 cut(s) 382
SetI ASST 6 cut(s) 56, 278, 343, 407, 528, 566
SfaNI GCATC 1 cut(s) 532
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SphI GCATGC 1 cut(s) 489
Sse9I AATT 1 cut(s) 573
SsiI CCGC 1 cut(s) 356
SspI AATATT 1 cut(s) 602
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 133, 241
TaaI ACNGT 4 cut(s) 146, 236, 307, 480
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 573
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 309, 604
Tru9I TTAA 2 cut(s) 309, 604
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 46, 462
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 1 cut(s) 310
VneI GTGCAC 1 cut(s) 378
XceI RCATGY 3 cut(s) 466, 489, 501
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.