Rh2AG388600

Epidermal growth factor-like domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017338
Physical Location & Seq
Reverse (-)
58164616 .. 58167287
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG388600.1

Sequence Viewer

Length: 603 bp
ATGGAAAGTCTCACTCCTACTCATCTTCTTCTTCTTCTCTTTACTCTCTTCACCTTCACTGCCACAATCAGTTGTACAGAGTCGATATCAAATCCAATACAAGACGATATACACGATATTGTTTGTTTAGTTCCAGGGGTAAACTGTGCGCAAGGAAAATGCAAGTATTCTAATGACTCAAGTCACTCAATATATGTGCCTGTTCTCGGACGTGTGGGTTTTGACTGCGACTGTAACCCTGGTTGGAAAAAGATTCAGATCGGCCCCTTTACCTATCCATCTTGTCTCATTCCAGACTGCACTGTTAATGTTGGATGTGATTTATCTCCCCCACAACCTCCTCCTTTCCCTCCGCCACCGGTAATACCACAATGTGCACTTGTTTGGTGTGGAGACGGAACCTGCATAGCCAACGGCCCTAGTGGATACATATGCCAATGCAATGAAGGCACATTGAACATGTTGGATAATCCACAGTTAGCATGCTTGAAAACATGCGCTTTTGGAGGAGACTGCAAGAAGCTTGGCTTCCCATCCGATGCCAAATCAAATGCTCCAAGCTCTCAAACAATTGGTAAGTCGTTTCGGCGTAAAAAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.48

Weight (kDa)

6.24

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017338)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g30801 FvH4_6g30802
malus_domestica MD17G1198900.v1.1
prunus_persica Prupe.3G075500_v2.0.a1
pyrus_communis pycom06g09320
rosa_laevigata RLG00000019637
rosa_roxburghii Rroxscaffold_2G00107280
rosa_rugosa Rorug02G0339800
rosa_samantha Rh2AG388600 Rh2BG396300 Rh2CG376000 Rh2DG411400
rosa_wichuraiana Rw2G031840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 410
AciI CCGC 1 cut(s) 353
AdeI CACNNNGTG 1 cut(s) 374
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 206
AflIII ACRYGT 2 cut(s) 211, 459
AgeI ACCGGT 1 cut(s) 358
AgsI TTSAA 2 cut(s) 457, 490
AjiI CACGTC 1 cut(s) 212
AjnI CCWGG 2 cut(s) 133, 238
AluBI AGCT 2 cut(s) 523, 561
AluI AGCT 2 cut(s) 523, 561
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 4 cut(s) 14, 290, 387, 504
Alw44I GTGCAC 1 cut(s) 375
AoxI GGCC 2 cut(s) 262, 415
ApaLI GTGCAC 1 cut(s) 375
AsiGI ACCGGT 1 cut(s) 358
AspLEI GCGC 2 cut(s) 151, 500
AspS9I GGNCC 2 cut(s) 263, 416
AsuHPI GGTGA 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 379
BccI CCATC 2 cut(s) 286, 541
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 2 cut(s) 135, 240
BciVI GTATCC 1 cut(s) 419
BcoDI GTCTC 4 cut(s) 14, 290, 387, 504
BfaI CTAG 1 cut(s) 420
BfuAI ACCTGC 1 cut(s) 410
BfuI GTATCC 1 cut(s) 419
Bme1390I CCNGG 2 cut(s) 135, 240
BmgBI CACGTC 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 263, 416
BmiI GGNNCC 2 cut(s) 265, 400
BmrFI CCNGG 2 cut(s) 135, 240
BmsI GCATC 1 cut(s) 529
BoxI GACNNNNGTC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 134, 238
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 448
Bse8I GATNNNNATC 1 cut(s) 257
BseBI CCWGG 2 cut(s) 135, 240
BseDI CCNNGG 2 cut(s) 134, 238
BseGI GGATG 2 cut(s) 320, 533
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 448
BseRI GAGGAG 2 cut(s) 330, 522
BseSI GKGCMC 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 283
BshFI GGCC 2 cut(s) 264, 417
BshTI ACCGGT 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 4 cut(s) 14, 290, 387, 504
BsmBI CGTCTC 1 cut(s) 387
BsnI GGCC 2 cut(s) 264, 417
Bsp1286I GDGCHC 1 cut(s) 379
Bsp1407I TGTACA 1 cut(s) 74
Bsp143I GATC 1 cut(s) 258
BspACI CCGC 1 cut(s) 353
BspANI GGCC 2 cut(s) 264, 417
BspLI GGNNCC 2 cut(s) 265, 400
BspMI ACCTGC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 448
BsrFI RCCGGY 1 cut(s) 358
BsrGI TGTACA 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 134, 238
BssMI GATC 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 135, 240
Bst4CI ACNGT 4 cut(s) 146, 233, 304, 477
Bst6I CTCTTC 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 484
BstF5I GGATG 2 cut(s) 320, 533
BstHHI GCGC 2 cut(s) 151, 500
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 4 cut(s) 14, 290, 387, 504
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 447
BstNI CCWGG 2 cut(s) 135, 240
BstNSI RCATGY 3 cut(s) 463, 486, 498
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 133, 238
BstSLI GKGCMC 1 cut(s) 379
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 2 cut(s) 264, 417
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 320, 533
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 300
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 484
CfoI GCGC 2 cut(s) 151, 500
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 263, 416
Csp6I GTAC 1 cut(s) 75
CspAI ACCGGT 1 cut(s) 358
CviAII CATG 3 cut(s) 460, 483, 495
CviJI RGCY 6 cut(s) 264, 410, 417, 523, 528, 561
CviKI_1 RGCY 6 cut(s) 264, 410, 417, 523, 528, 561
CviQI GTAC 1 cut(s) 75
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
DraIII CACNNNGTG 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 1 cut(s) 342
Eco32I GATATC 1 cut(s) 87
EcoRII CCWGG 2 cut(s) 133, 238
EcoRV GATATC 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 3 cut(s) 463, 486, 498
FaiI YATR 9 cut(s) 110, 193, 195, 407, 431, 433, 461, 484, 496
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FatI CATG 3 cut(s) 459, 482, 494
FauNDI CATATG 1 cut(s) 431
FokI GGATG 2 cut(s) 327, 520
FspBI CTAG 1 cut(s) 420
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 2 cut(s) 150, 499
HaeIII GGCC 2 cut(s) 264, 417
HapII CCGG 1 cut(s) 359
HhaI GCGC 2 cut(s) 151, 500
Hin1II CATG 3 cut(s) 463, 486, 498
Hin6I GCGC 2 cut(s) 149, 498
HinP1I GCGC 2 cut(s) 149, 498
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 3 cut(s) 80, 176, 253
HpaII CCGG 1 cut(s) 359
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 142, 377
Hpy188I TCNGA 3 cut(s) 209, 258, 538
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 2 cut(s) 142, 377
HpyAV CCTTC 2 cut(s) 64, 440
HpyCH4III ACNGT 4 cut(s) 146, 233, 304, 477
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 6 cut(s) 162, 300, 377, 405, 441, 516
HpyF10VI GCNNNNNNNGC 1 cut(s) 447
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 3 cut(s) 463, 486, 498
HspAI GCGC 2 cut(s) 149, 498
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 559
LpnPI CCDG 8 cut(s) 120, 147, 213, 225, 252, 306, 372, 415
LweI GCATC 1 cut(s) 529
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 2 cut(s) 182, 233
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 5 cut(s) 17, 20, 23, 26, 40
MfeI CAATTG 1 cut(s) 570
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 1 cut(s) 570
MlyI GAGTC 2 cut(s) 89, 170
MmeI TCCRAC 3 cut(s) 224, 292, 444
MnlI CCTC 4 cut(s) 348, 351, 360, 500
MseI TTAA 2 cut(s) 306, 601
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 2 cut(s) 135, 240
MunI CAATTG 1 cut(s) 570
MvaI CCWGG 2 cut(s) 135, 240
MwoI GCNNNNNNNGC 1 cut(s) 447
NdeI CATATG 1 cut(s) 431
NdeII GATC 1 cut(s) 258
NlaIII CATG 3 cut(s) 463, 486, 498
NlaIV GGNNCC 2 cut(s) 265, 400
NmuCI GTSAC 1 cut(s) 182
NsbI TGCGCA 1 cut(s) 150
NspI RCATGY 3 cut(s) 463, 486, 498
PaeI GCATGC 1 cut(s) 486
PciI ACATGT 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 1 cut(s) 253
PinAI ACCGGT 1 cut(s) 358
PleI GAGTC 2 cut(s) 88, 170
PpsI GAGTC 2 cut(s) 88, 170
PscI ACATGT 1 cut(s) 459
PshAI GACNNNNGTC 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 133, 238
PspGI CCWGG 2 cut(s) 133, 238
PspN4I GGNNCC 2 cut(s) 265, 400
PspPI GGNCC 2 cut(s) 263, 416
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 306, 601
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 2 cut(s) 263, 416
SchI GAGTC 2 cut(s) 89, 170
ScrFI CCNGG 2 cut(s) 135, 240
SduI GDGCHC 1 cut(s) 379
SetI ASST 7 cut(s) 56, 214, 275, 340, 404, 525, 563
SfaNI GCATC 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SphI GCATGC 1 cut(s) 486
Sse9I AATT 1 cut(s) 570
SsiI CCGC 1 cut(s) 353
SspI AATATT 1 cut(s) 599
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 133, 238
TaaI ACNGT 4 cut(s) 146, 233, 304, 477
TaiI ACGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 570
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 2 cut(s) 306, 601
Tru9I TTAA 2 cut(s) 306, 601
TscAI CASTG 2 cut(s) 64, 307
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 459
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 2 cut(s) 64, 307
VneI GTGCAC 1 cut(s) 375
XceI RCATGY 3 cut(s) 463, 486, 498
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.