FvH4_6g30820

Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
23952467 .. 23958122
5656 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30820.t2

Sequence Viewer

Length: 1599 bp
ATGGTGGGTCCGACGCTGGTGGGTCTGCAAGACCACCTGAAATTGGCGAGAGAGTACGCCATGGAAGGCCTCTACGACACCTCCATGATCTTCTTCGATGGCGGCATTGCTCAGATCAACAAGCACATAAACACGCTTGATGATCCGTTGATTCGCTCAAAATGGATGAATGTAAAGAAGGCACTGTCCGAGGAAGCAGAGGTTGTGAAACAACTAGATGCAGAGAGAAAGGCATTTAAGGAAAGCCCCATGGGCCGACGCCCTTCCTCACCTCCAATTCATGCCAAGTCATCCTTCGTTTTTCAACCCTTAGATGAATACCCCACTTCTTCAGGATACCCAACTTCTTCAGGATACCCAACTTCTTCAGGTTCTCCTATGGATGATCCTGATGTGTGGAGGCCACCAAGTCGGGACACTTCAAACAGAAGAAATGCAAAGGCTGGTCAAGTTGGTATGAGGAAGTCACCGCAAGATGGAAATTGGGCTCGGAGTTCTGCATCAAAAGCAGGCACACCAGGCCGTAATGCAAAGGTTGGTGGATCAAGTAGGACCAACTCCACGGTCAGGTCTTCTACTCCCGGCAAGAAAGACACCCGATCTGGAAAATCTAGCAAGGCAGATTCAGCGAATGGTGATGCTGAGGATGGAAAGCCGAAGAGGCAGTATGAGGGACCTGATCCTGATTTGGCTGAAATGCTTGAAAGAGATGTACTGGAAACCAGTCCTGGAGTAAGATGGGATGATGTTGCTGGTCTGACTGAAGCAAAAAGACTCCTGGAGGAAGCCGTTGTTCTTCCTCTGTGGATGCCAGAATATTTTCAGGGGATCAGGAGACCATGGAAGGGTGTTCTTATGTTTGGTCCTCCTGGAACTGGAAAGACATTACTTGCTAAAGCTGTTGCTACTGAGTGTGGCACAACTTTTTTCAATGTCTCCTCTGCTACATTAGCTTCAAAGTGGCGTGGAGAAAGTGAACGTATGGTTCGGTGCCTATTTGATCTCGCAAGAGCTTACGCTCCGAGTACAATCTTTATAGATGAAATTGATTCTCTCTGCAATTCCCGGGGGGCATCAGGAGAGCATGAGTCATCCAGAAGGGTGAAATCTGAACTTCTGGTCCAGGTTGATGGTGTAAATGCTACTTCCACAAATGAAGATGGTACTCGCAAGATAGTGATGGTTCTGGCAGCTACTAACTTCCCATGGGACATTGATGAGGCTCTCAGGAGAAGGCTGGAGAAGCGTATTTATATTCCTCTTCCAAATTTTGAGAGCCGTAAAGAGCTTATTCGGATAAATTTGAAAACAGTTGAGGTTGCTCCGGATGTAAACATTGATGATGTGGCTCGCCGAACAGATGGATATAGTGGTGATGATCTCACAAACGTTTGCCGTGATGCTTCCTTGAATGGGATGAGGAGGAAAATAGCTGGAAAGACACGTGATGAGATCAAGAGCATGGCTAAGGATGAAATTTCAAAGGATCCTGTTGAAATGTGTGATTTTGAAGAAGCCTTGTCGAAGGTCCAGCGGAGTGTTTCTCAATCTGATATTGAAAAACATGAAAAATGGTTCTCAGAGTTTGGGTCAGCATAG

Protein Analysis

533

Amino Acids

58.84

Weight (kDa)

7.59

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 229 - 366 2.6e-38 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 388 - 430 2.2e-12 AAA+ lid domain
Vps4_C PF09336 430 - 475 8.2e-11 Vps4 C terminal oligomerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015121)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80350
fragaria_vesca FvH4_6g30820 FvH4_6g30820
malus_domestica MD09G1216700.v1.1 MD17G1198800.v1.1
prunus_persica Prupe.3G075400_v2.0.a1
pyrus_communis pycom09g13400 pycom17g20350
rosa_chinensis RchiOBHm_Chr2g0137251
rosa_laevigata RLG00000019638
rosa_multiflora Rmu_sc0000894.1_g000020
rosa_roxburghii Rroxscaffold_2G00107270
rosa_rugosa Rorug02G0339900 Rorug02G0340000
rosa_samantha Rh2BG396400
rosa_wichuraiana Rw2G031850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 990
AccIII TCCGGA 1 cut(s) 1324
AciI CCGC 3 cut(s) 102, 470, 1534
AclI AACGTT 1 cut(s) 1389
AclWI GGATC 7 cut(s) 137, 380, 550, 674, 836, 1481, 1494
AcsI RAATTY 3 cut(s) 1267, 1300, 1476
AcuI CTGAAG 4 cut(s) 315, 333, 351, 783
AcvI CACGTG 1 cut(s) 1445
AcyI GRCGYC 1 cut(s) 259
AfaI GTAC 4 cut(s) 56, 714, 1027, 1165
AfiI CCNNNNNNNGG 6 cut(s) 43, 476, 567, 845, 875, 1413
AflIII ACRYGT 1 cut(s) 1442
AjnI CCWGG 5 cut(s) 517, 727, 777, 868, 1122
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AloI GAACNNNNNNTCC 2 cut(s) 1104, 1136
AluBI AGCT 6 cut(s) 899, 953, 1013, 1193, 1288, 1433
AluI AGCT 6 cut(s) 899, 953, 1013, 1193, 1288, 1433
Alw26I GTCTC 2 cut(s) 829, 940
AlwI GGATC 7 cut(s) 137, 380, 550, 674, 836, 1481, 1494
Ama87I CYCGRG 1 cut(s) 1065
Aor13HI TCCGGA 1 cut(s) 1324
AoxI GGCC 4 cut(s) 67, 253, 401, 520
ApeKI GCWGC 1 cut(s) 1190
ApoI RAATTY 3 cut(s) 1267, 1300, 1476
Asp700I GAANNNNTTC 1 cut(s) 819
AspS9I GGNCC 7 cut(s) 8, 253, 552, 674, 863, 1120, 1528
AsuC2I CCSGG 3 cut(s) 582, 1066, 1067
AsuHPI GGTGA 5 cut(s) 261, 459, 647, 1114, 1385
AvaI CYCGRG 1 cut(s) 1065
AvaII GGWCC 6 cut(s) 8, 552, 674, 863, 1120, 1528
BamHI GGATCC 1 cut(s) 1486
BanI GGYRCC 1 cut(s) 990
BanII GRGCYC 1 cut(s) 490
BbrPI CACGTG 1 cut(s) 1445
BbsI GAAGAC 1 cut(s) 564
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 1 cut(s) 1202
BccI CCATC 8 cut(s) 92, 470, 641, 732, 1124, 1154, 1174, 1355
BceAI ACGGC 4 cut(s) 507, 773, 1263, 1380
BciT130I CCWGG 5 cut(s) 519, 729, 779, 870, 1124
BciVI GTATCC 2 cut(s) 329, 347
BcnI CCSGG 3 cut(s) 582, 1066, 1067
BcoDI GTCTC 2 cut(s) 829, 940
BfaI CTAG 2 cut(s) 215, 612
BfuI GTATCC 2 cut(s) 329, 347
BglI GCCNNNNNGGC 2 cut(s) 252, 661
BisI GCNGC 2 cut(s) 103, 1191
BlsI GCNGC 2 cut(s) 104, 1192
Bme1390I CCNGG 8 cut(s) 519, 582, 729, 779, 870, 1066, 1067, 1124
Bme18I GGWCC 6 cut(s) 8, 552, 674, 863, 1120, 1528
BmeT110I CYCGRG 1 cut(s) 1065
BmgT120I GGNCC 7 cut(s) 8, 253, 552, 674, 863, 1120, 1528
BmiI GGNNCC 4 cut(s) 9, 675, 992, 1488
BmrFI CCNGG 8 cut(s) 519, 582, 729, 779, 870, 1066, 1067, 1124
BmsI GCATC 6 cut(s) 208, 509, 628, 798, 1082, 1390
BpiI GAAGAC 1 cut(s) 564
BplI GAGNNNNNCTC 2 cut(s) 1528, 1560
BpmI CTGGAG 3 cut(s) 750, 800, 1259
Bpu10I CCTNAGC 2 cut(s) 642, 1467
BpuMI CCSGG 3 cut(s) 582, 1066, 1067
BsaAI YACGTR 1 cut(s) 1445
BsaHI GRCGYC 1 cut(s) 259
BsaI GGTCTC 1 cut(s) 829
BsaJI CCNNGG 8 cut(s) 60, 189, 249, 561, 839, 1065, 1066, 1205
BsaWI WCCGGW 1 cut(s) 1324
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 476, 567, 845, 875, 1413
Bse1I ACTGG 3 cut(s) 720, 723, 880
Bse3DI GCAATG 1 cut(s) 105
BseAI TCCGGA 1 cut(s) 1324
BseBI CCWGG 5 cut(s) 519, 729, 779, 870, 1124
BseDI CCNNGG 8 cut(s) 60, 189, 249, 561, 839, 1065, 1066, 1205
BseLI CCNNNNNNNGG 6 cut(s) 43, 476, 567, 845, 875, 1413
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 5 cut(s) 125, 633, 900, 1240, 1593
BseNI ACTGG 3 cut(s) 720, 723, 880
BseRI GAGGAG 2 cut(s) 928, 1435
BseXI GCAGC 1 cut(s) 1202
BshFI GGCC 4 cut(s) 69, 255, 403, 522
BshNI GGYRCC 1 cut(s) 990
BsiHKCI CYCGRG 1 cut(s) 1065
BsiSI CCGG 3 cut(s) 582, 1066, 1325
BslFI GGGAC 3 cut(s) 428, 687, 1223
BslI CCNNNNNNNGG 6 cut(s) 43, 476, 567, 845, 875, 1413
BsmAI GTCTC 2 cut(s) 829, 940
BsmFI GGGAC 3 cut(s) 428, 687, 1223
BsnI GGCC 4 cut(s) 69, 255, 403, 522
Bso31I GGTCTC 1 cut(s) 829
BsoBI CYCGRG 1 cut(s) 1065
Bsp1286I GDGCHC 1 cut(s) 490
Bsp13I TCCGGA 1 cut(s) 1324
Bsp19I CCATGG 4 cut(s) 60, 249, 839, 1205
BspACI CCGC 3 cut(s) 102, 470, 1534
BspANI GGCC 4 cut(s) 69, 255, 403, 522
BspCNI CTCAG 5 cut(s) 124, 634, 901, 1239, 1592
BspEI TCCGGA 1 cut(s) 1324
BspLI GGNNCC 4 cut(s) 9, 675, 992, 1488
BspPI GGATC 7 cut(s) 137, 380, 550, 674, 836, 1481, 1494
BspT107I GGYRCC 1 cut(s) 990
BspTNI GGTCTC 1 cut(s) 829
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 3 cut(s) 720, 723, 880
BssECI CCNNGG 8 cut(s) 60, 189, 249, 561, 839, 1065, 1066, 1205
BssNI GRCGYC 1 cut(s) 259
BssT1I CCWWGG 4 cut(s) 60, 249, 839, 1205
Bst2UI CCWGG 5 cut(s) 519, 729, 779, 870, 1124
Bst4CI ACNGT 3 cut(s) 186, 565, 1312
Bst6I CTCTTC 2 cut(s) 653, 1266
BstACI GRCGYC 1 cut(s) 259
BstBAI YACGTR 1 cut(s) 1445
BstC8I GCNNGC 2 cut(s) 511, 1351
BstDEI CTNAG 7 cut(s) 111, 310, 642, 909, 1226, 1467, 1579
BstDSI CCRYGG 5 cut(s) 60, 249, 561, 839, 1205
BstMAI GTCTC 2 cut(s) 829, 940
BstMWI GCNNNNNNNGC 7 cut(s) 252, 506, 519, 626, 661, 950, 1243
BstNI CCWGG 5 cut(s) 519, 729, 779, 870, 1124
BstSCI CCNGG 8 cut(s) 517, 580, 727, 777, 868, 1064, 1065, 1122
BstV1I GCAGC 1 cut(s) 1202
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 1486
BstXI CCANNNNNNTGG 1 cut(s) 1130
BstYI RGATCY 1 cut(s) 1486
BsuI GTATCC 2 cut(s) 329, 347
BsuRI GGCC 4 cut(s) 69, 255, 403, 522
BtgI CCRYGG 5 cut(s) 60, 249, 561, 839, 1205
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 511, 1351
Cfr13I GGNCC 7 cut(s) 8, 253, 552, 674, 863, 1120, 1528
Cfr9I CCCGGG 1 cut(s) 1065
CseI GACGC 2 cut(s) 22, 267
Csp6I GTAC 4 cut(s) 55, 713, 1026, 1164
CviAII CATG 9 cut(s) 61, 85, 250, 281, 840, 1085, 1206, 1462, 1565
CviQI GTAC 4 cut(s) 55, 713, 1026, 1164
DdeI CTNAG 7 cut(s) 111, 310, 642, 909, 1226, 1467, 1579
Eam1104I CTCTTC 2 cut(s) 653, 1266
EarI CTCTTC 2 cut(s) 653, 1266
Eco130I CCWWGG 4 cut(s) 60, 249, 839, 1205
Eco147I AGGCCT 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 490
Eco31I GGTCTC 1 cut(s) 829
Eco47I GGWCC 6 cut(s) 8, 552, 674, 863, 1120, 1528
Eco57I CTGAAG 4 cut(s) 315, 333, 351, 783
Eco72I CACGTG 1 cut(s) 1445
Eco88I CYCGRG 1 cut(s) 1065
EcoO109I RGGNCCY 1 cut(s) 674
EcoRII CCWGG 5 cut(s) 517, 727, 777, 868, 1122
EcoT14I CCWWGG 4 cut(s) 60, 249, 839, 1205
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 4 cut(s) 60, 249, 839, 1205
FaeI CATG 9 cut(s) 64, 88, 253, 284, 843, 1088, 1209, 1465, 1568
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 3 cut(s) 428, 687, 1223
FatI CATG 9 cut(s) 60, 84, 249, 280, 839, 1084, 1205, 1461, 1564
Fnu4HI GCNGC 2 cut(s) 103, 1191
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 2 cut(s) 103, 1191
FspBI CTAG 2 cut(s) 215, 612
GluI GCNGC 2 cut(s) 103, 1191
GsuI CTGGAG 3 cut(s) 750, 800, 1259
HaeIII GGCC 4 cut(s) 69, 255, 403, 522
HapII CCGG 3 cut(s) 582, 1066, 1325
HgaI GACGC 2 cut(s) 22, 267
Hin1I GRCGYC 1 cut(s) 259
Hin1II CATG 9 cut(s) 64, 88, 253, 284, 843, 1088, 1209, 1465, 1568
HinfI GANTC 5 cut(s) 151, 623, 774, 1049, 1088
HpaII CCGG 3 cut(s) 582, 1066, 1325
HphI GGTGA 5 cut(s) 261, 459, 647, 1114, 1385
Hpy166II GTNNAC 2 cut(s) 977, 1333
Hpy8I GTNNAC 2 cut(s) 977, 1333
Hpy99I CGWCG 2 cut(s) 16, 261
HpyAV CCTTC 8 cut(s) 59, 172, 273, 304, 838, 1092, 1227, 1519
HpyCH4III ACNGT 3 cut(s) 186, 565, 1312
HpyCH4IV ACGT 3 cut(s) 979, 1389, 1444
HpyCH4V TGCA 6 cut(s) 28, 221, 437, 500, 530, 1059
HpyF10VI GCNNNNNNNGC 7 cut(s) 252, 506, 519, 626, 661, 950, 1243
HpyF3I CTNAG 7 cut(s) 111, 310, 642, 909, 1226, 1467, 1579
HpySE526I ACGT 3 cut(s) 979, 1389, 1444
Hsp92I GRCGYC 1 cut(s) 259
Hsp92II CATG 9 cut(s) 64, 88, 253, 284, 843, 1088, 1209, 1465, 1568
Kpn2I TCCGGA 1 cut(s) 1324
LmnI GCTCC 2 cut(s) 1024, 1327
Lsp1109I GCAGC 1 cut(s) 1202
LweI GCATC 6 cut(s) 208, 509, 628, 798, 1082, 1390
MaeI CTAG 2 cut(s) 215, 612
MaeII ACGT 3 cut(s) 979, 1389, 1444
MaeIII GTNAC 1 cut(s) 465
MflI RGATCY 1 cut(s) 1486
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 8 cut(s) 41, 276, 481, 1044, 1060, 1267, 1300, 1476
MlyI GAGTC 2 cut(s) 768, 1097
MmeI TCCRAC 1 cut(s) 35
MroI TCCGGA 1 cut(s) 1324
MroXI GAANNNNTTC 1 cut(s) 819
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 1534
MspI CCGG 3 cut(s) 582, 1066, 1325
MspR9I CCNGG 8 cut(s) 519, 582, 729, 779, 870, 1066, 1067, 1124
MvaI CCWGG 5 cut(s) 519, 729, 779, 870, 1124
MwoI GCNNNNNNNGC 7 cut(s) 252, 506, 519, 626, 661, 950, 1243
NciI CCSGG 3 cut(s) 582, 1066, 1067
NcoI CCATGG 4 cut(s) 60, 249, 839, 1205
NlaIII CATG 9 cut(s) 64, 88, 253, 284, 843, 1088, 1209, 1465, 1568
NlaIV GGNNCC 4 cut(s) 9, 675, 992, 1488
NmuCI GTSAC 1 cut(s) 465
PceI AGGCCT 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 819
PfeI GAWTC 3 cut(s) 151, 623, 1049
PfoI TCCNGGA 3 cut(s) 727, 777, 868
PkrI GCNGC 2 cut(s) 104, 1192
PleI GAGTC 2 cut(s) 768, 1096
PmaCI CACGTG 1 cut(s) 1445
PmlI CACGTG 1 cut(s) 1445
PpsI GAGTC 2 cut(s) 768, 1096
Ppu21I YACGTR 1 cut(s) 1445
PpuMI RGGWCCY 1 cut(s) 674
Psp1406I AACGTT 1 cut(s) 1389
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 5 cut(s) 517, 727, 777, 868, 1122
PspCI CACGTG 1 cut(s) 1445
PspGI CCWGG 5 cut(s) 517, 727, 777, 868, 1122
PspN4I GGNNCC 4 cut(s) 9, 675, 992, 1488
PspPI GGNCC 7 cut(s) 8, 253, 552, 674, 863, 1120, 1528
PspPPI RGGWCCY 1 cut(s) 674
PsuI RGATCY 1 cut(s) 1486
RsaI GTAC 4 cut(s) 56, 714, 1027, 1165
RsaNI GTAC 4 cut(s) 55, 713, 1026, 1164
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 103, 1191
Sau96I GGNCC 7 cut(s) 8, 253, 552, 674, 863, 1120, 1528
SchI GAGTC 2 cut(s) 768, 1097
ScrFI CCNGG 8 cut(s) 519, 582, 729, 779, 870, 1066, 1067, 1124
SduI GDGCHC 1 cut(s) 490
SfaNI GCATC 6 cut(s) 208, 509, 628, 798, 1082, 1390
SinI GGWCC 6 cut(s) 8, 552, 674, 863, 1120, 1528
SmaI CCCGGG 1 cut(s) 1067
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 8 cut(s) 41, 276, 481, 1044, 1060, 1267, 1300, 1476
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 3 cut(s) 102, 470, 1534
SspI AATATT 1 cut(s) 818
SspMI CTAG 2 cut(s) 215, 612
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 8 cut(s) 517, 580, 727, 777, 868, 1064, 1065, 1122
StyI CCWWGG 4 cut(s) 60, 249, 839, 1205
TaaI ACNGT 3 cut(s) 186, 565, 1312
TaiI ACGT 3 cut(s) 982, 1392, 1447
TaqI TCGA 2 cut(s) 96, 1523
TasI AATT 8 cut(s) 41, 276, 481, 1044, 1060, 1267, 1300, 1476
TatI WGTACW 2 cut(s) 712, 1025
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 3 cut(s) 151, 623, 1049
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 465
TseI GCWGC 1 cut(s) 1190
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 7 cut(s) 182, 269, 330, 1056, 1170, 1488, 1581
TspGWI ACGGA 1 cut(s) 135
TspMI CCCGGG 1 cut(s) 1065
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 6 cut(s) 8, 552, 674, 863, 1120, 1528
XapI RAATTY 3 cut(s) 1267, 1300, 1476
XmaI CCCGGG 1 cut(s) 1065
XmnI GAANNNNTTC 1 cut(s) 819
XspI CTAG 2 cut(s) 215, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.