Rmu_sc0000894.1_g000020

Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000894.1
Physical Location & Seq
Forward (+)
86614 .. 91234
4621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000894.1_g000020.1.cds

Sequence Viewer

Length: 1521 bp
atggaagggctctacgacacctccatgatcttcttcgacggcggcattgctcagatcaacaagcacttaaacacgcttgatgacccgttgatccgctcaaaatggatgaatgtaaagaaggcactttccgaggaagcagaggttgtgaaacaactagatgccgagagaagggcatttaaggaaagccccatgggccggcgcccttcctcgcctccaattcatgctaagtcgtccttcgtttttcaacccttagatgaatacccaacttcttcaggatatccaacttcttcaggttcacctatggatgatcctgatgtgtggaggccaccaagtagggacacttcaaatagaagaaatgcaaaggctggtcaggttggtatgaggaagtcgccacaagatggaaattgggctcggagttctgcaacaaaagcaggcacacctggccgtggtgcaaaggctggtggatcaagtagggctaactcagcggtccggtcttctactcccggcaagaaagacacccgatctggaaaatctagcaaggcagattcagcgaatggtgatgctgaggatggaaagccaaagaggcagtatgagggacctgatcctgatttggctgaaatgcttgaaagggatgtactggaaaccagtcctggagtgagatgggatgatgttgctggcctgactgaagcaaaaagacttctggaggaagccgttgttcttcctttgtggatgccagaatattttcaggggatcaggagaccatggaagggtgttcttatgtttggtcctcctggaactggaaagacattacttgctaaagctgttgctactgagtgtggcacaacttttttcaatgtctcctctgctacattagcttcaaagtggcgtggagaaagtgaacgaatggttcggtgcttatttgatcttgcaagagcttatgcgccgagtacaatcttcatagatgaaattgattctctctgcaattcccggggggcatcaggagagcatgagtcctccagaagggtgaaatctgaacttctggtccaggttgatggtgtaaatgccacttccacaaatgaagatggtactcgtaaaatagtgatggttctggcagctactaactttccatgggacattgatgaggcactcaggaggagactggagaagcgtatttatatccctcttccaaattttgagagccgtaaagagcttattcggataaatttgaaaacagttgaggttgctcaagatgtaaacattgatgatgtggctcgccgaacagatggatatagtggtgacgatctcacaaatgtttgccgtgatgcctcgttgaatgggatgaggaggaaaatagctggaaagacacgtgatgagatcaagagcatgtcgaaggatgagatttcaaaggatcctgttgccatgtgtgattttgaagaagccttggtgaaggtccaacggagtgtttctcaatctgatattgaacggcatgaaaaatggttttcagagtttgggtcagcatag

Protein Analysis

506

Amino Acids

55.98

Weight (kDa)

8.11

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015121)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80350
fragaria_vesca FvH4_6g30820 FvH4_6g30820
malus_domestica MD09G1216700.v1.1 MD17G1198800.v1.1
prunus_persica Prupe.3G075400_v2.0.a1
pyrus_communis pycom09g13400 pycom17g20350
rosa_chinensis RchiOBHm_Chr2g0137251
rosa_laevigata RLG00000019638
rosa_multiflora Rmu_sc0000894.1_g000020
rosa_roxburghii Rroxscaffold_2G00107270
rosa_rugosa Rorug02G0339900 Rorug02G0340000
rosa_samantha Rh2BG396400
rosa_wichuraiana Rw2G031850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 198
AccB7I CCANNNNNTGG 1 cut(s) 398
AccBSI CCGCTC 1 cut(s) 96
AciI CCGC 3 cut(s) 42, 94, 485
AclWI GGATC 7 cut(s) 85, 302, 472, 596, 758, 1403, 1416
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 2 cut(s) 1189, 1222
AcuI CTGAAG 3 cut(s) 255, 273, 705
AcvI CACGTG 1 cut(s) 1367
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 3 cut(s) 636, 949, 1087
AfiI CCNNNNNNNGG 7 cut(s) 168, 195, 398, 446, 767, 797, 1020
AflIII ACRYGT 1 cut(s) 1364
AjnI CCWGG 4 cut(s) 439, 649, 790, 1044
AloI GAACNNNNNNTCC 2 cut(s) 1026, 1058
AluBI AGCT 6 cut(s) 821, 875, 935, 1115, 1210, 1355
AluI AGCT 6 cut(s) 821, 875, 935, 1115, 1210, 1355
Alw26I GTCTC 3 cut(s) 751, 862, 1150
AlwI GGATC 7 cut(s) 85, 302, 472, 596, 758, 1403, 1416
Ama87I CYCGRG 1 cut(s) 987
AoxI GGCC 4 cut(s) 193, 323, 442, 676
ApeKI GCWGC 1 cut(s) 1112
ApoI RAATTY 2 cut(s) 1189, 1222
Asp700I GAANNNNTTC 1 cut(s) 741
AspLEI GCGC 2 cut(s) 201, 943
AspS9I GGNCC 6 cut(s) 193, 487, 596, 785, 1042, 1450
AsuC2I CCSGG 3 cut(s) 504, 988, 989
AsuHPI GGTGA 5 cut(s) 288, 569, 1036, 1307, 1456
AvaI CYCGRG 1 cut(s) 987
AvaII GGWCC 5 cut(s) 487, 596, 785, 1042, 1450
BamHI GGATCC 1 cut(s) 1408
BanI GGYRCC 1 cut(s) 198
BanII GRGCYC 2 cut(s) 12, 412
BarI GAAGNNNNNNTAC 2 cut(s) 325, 357
BbrPI CACGTG 1 cut(s) 1367
BbsI GAAGAC 1 cut(s) 486
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 1 cut(s) 1124
BccI CCATC 7 cut(s) 392, 563, 654, 1046, 1076, 1096, 1277
BceAI ACGGC 6 cut(s) 55, 429, 695, 1185, 1302, 1499
BciT130I CCWGG 4 cut(s) 441, 651, 792, 1046
BcnI CCSGG 3 cut(s) 504, 988, 989
BcoDI GTCTC 3 cut(s) 751, 862, 1150
BfaI CTAG 2 cut(s) 155, 534
BfoI RGCGCY 1 cut(s) 202
BglI GCCNNNNNGGC 2 cut(s) 192, 583
BisI GCNGC 2 cut(s) 43, 1113
BlsI GCNGC 2 cut(s) 44, 1114
Bme1390I CCNGG 7 cut(s) 441, 504, 651, 792, 988, 989, 1046
Bme18I GGWCC 5 cut(s) 487, 596, 785, 1042, 1450
BmeT110I CYCGRG 1 cut(s) 987
BmgT120I GGNCC 6 cut(s) 193, 487, 596, 785, 1042, 1450
BmiI GGNNCC 3 cut(s) 200, 597, 1410
BmrFI CCNGG 7 cut(s) 441, 504, 651, 792, 988, 989, 1046
BmsI GCATC 5 cut(s) 148, 550, 720, 1004, 1312
BpiI GAAGAC 1 cut(s) 486
BplI GAGNNNNNCTC 2 cut(s) 1450, 1482
BpmI CTGGAG 4 cut(s) 672, 722, 1000, 1181
Bpu10I CCTNAGC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 1230
BpuMI CCSGG 3 cut(s) 504, 988, 989
BsaAI YACGTR 1 cut(s) 1367
BsaHI GRCGYC 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 751
BsaJI CCNNGG 8 cut(s) 129, 189, 445, 761, 987, 988, 1127, 1440
BsaWI WCCGGW 1 cut(s) 489
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 7 cut(s) 168, 195, 398, 446, 767, 797, 1020
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 4 cut(s) 642, 645, 802, 1164
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 4 cut(s) 441, 651, 792, 1046
BseDI CCNNGG 8 cut(s) 129, 189, 445, 761, 987, 988, 1127, 1440
BseGI GGATG 8 cut(s) 111, 310, 574, 637, 670, 735, 1344, 1399
BseLI CCNNNNNNNGG 7 cut(s) 168, 195, 398, 446, 767, 797, 1020
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 5 cut(s) 65, 495, 555, 822, 1162
BseNI ACTGG 4 cut(s) 642, 645, 802, 1164
BseRI GAGGAG 3 cut(s) 850, 1168, 1357
BseXI GCAGC 1 cut(s) 1124
BshFI GGCC 4 cut(s) 195, 325, 444, 678
BshNI GGYRCC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 987
BsiSI CCGG 4 cut(s) 196, 490, 504, 988
BslFI GGGAC 3 cut(s) 350, 609, 1145
BslI CCNNNNNNNGG 7 cut(s) 168, 195, 398, 446, 767, 797, 1020
BsmAI GTCTC 3 cut(s) 751, 862, 1150
BsmFI GGGAC 3 cut(s) 350, 609, 1145
BsnI GGCC 4 cut(s) 195, 325, 444, 678
Bso31I GGTCTC 1 cut(s) 751
BsoBI CYCGRG 1 cut(s) 987
Bsp1286I GDGCHC 2 cut(s) 12, 412
Bsp19I CCATGG 3 cut(s) 189, 761, 1127
BspACI CCGC 3 cut(s) 42, 94, 485
BspANI GGCC 4 cut(s) 195, 325, 444, 678
BspCNI CTCAG 5 cut(s) 64, 494, 556, 823, 1161
BspLI GGNNCC 3 cut(s) 200, 597, 1410
BspPI GGATC 7 cut(s) 85, 302, 472, 596, 758, 1403, 1416
BspT107I GGYRCC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 751
BsrBI CCGCTC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 195
BsrI ACTGG 4 cut(s) 642, 645, 802, 1164
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 8 cut(s) 129, 189, 445, 761, 987, 988, 1127, 1440
BssNI GRCGYC 1 cut(s) 199
BssT1I CCWWGG 4 cut(s) 189, 761, 1127, 1440
Bst2UI CCWGG 4 cut(s) 441, 651, 792, 1046
Bst4CI ACNGT 1 cut(s) 1234
Bst6I CTCTTC 1 cut(s) 1188
BstACI GRCGYC 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 1367
BstC8I GCNNGC 4 cut(s) 197, 433, 676, 1273
BstDEI CTNAG 7 cut(s) 51, 225, 250, 481, 564, 831, 1148
BstDSI CCRYGG 4 cut(s) 189, 445, 761, 1127
BstENI CCTNNNNNAGG 1 cut(s) 1018
BstF5I GGATG 8 cut(s) 111, 310, 574, 637, 670, 735, 1344, 1399
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 2 cut(s) 201, 943
BstMAI GTCTC 3 cut(s) 751, 862, 1150
BstMWI GCNNNNNNNGC 7 cut(s) 192, 428, 441, 482, 548, 583, 872
BstNI CCWGG 4 cut(s) 441, 651, 792, 1046
BstNSI RCATGY 1 cut(s) 1387
BstSCI CCNGG 7 cut(s) 439, 502, 649, 790, 986, 987, 1044
BstV1I GCAGC 1 cut(s) 1124
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 1408
BstXI CCANNNNNNTGG 1 cut(s) 1052
BstYI RGATCY 1 cut(s) 1408
BsuRI GGCC 4 cut(s) 195, 325, 444, 678
BtgI CCRYGG 4 cut(s) 189, 445, 761, 1127
BtsCI GGATG 8 cut(s) 111, 310, 574, 637, 670, 735, 1344, 1399
Cac8I GCNNGC 4 cut(s) 197, 433, 676, 1273
CfoI GCGC 2 cut(s) 201, 943
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 6 cut(s) 193, 487, 596, 785, 1042, 1450
Cfr9I CCCGGG 1 cut(s) 987
CpoI CGGWCCG 1 cut(s) 487
Csp6I GTAC 3 cut(s) 635, 948, 1086
CspI CGGWCCG 1 cut(s) 487
CviAII CATG 9 cut(s) 25, 190, 221, 762, 1007, 1128, 1384, 1420, 1487
CviQI GTAC 3 cut(s) 635, 948, 1086
DdeI CTNAG 7 cut(s) 51, 225, 250, 481, 564, 831, 1148
DinI GGCGCC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 1188
EarI CTCTTC 1 cut(s) 1188
Eco130I CCWWGG 4 cut(s) 189, 761, 1127, 1440
Eco24I GRGCYC 2 cut(s) 12, 412
Eco31I GGTCTC 1 cut(s) 751
Eco32I GATATC 1 cut(s) 278
Eco47I GGWCC 5 cut(s) 487, 596, 785, 1042, 1450
Eco57I CTGAAG 3 cut(s) 255, 273, 705
Eco72I CACGTG 1 cut(s) 1367
Eco88I CYCGRG 1 cut(s) 987
EcoNI CCTNNNNNAGG 1 cut(s) 1018
EcoO109I RGGNCCY 1 cut(s) 596
EcoRII CCWGG 4 cut(s) 439, 649, 790, 1044
EcoRV GATATC 1 cut(s) 278
EcoT14I CCWWGG 4 cut(s) 189, 761, 1127, 1440
EcoT38I GRGCYC 2 cut(s) 12, 412
EgeI GGCGCC 1 cut(s) 200
EheI GGCGCC 1 cut(s) 200
ErhI CCWWGG 4 cut(s) 189, 761, 1127, 1440
FaeI CATG 9 cut(s) 28, 193, 224, 765, 1010, 1131, 1387, 1423, 1490
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 3 cut(s) 350, 609, 1145
FatI CATG 9 cut(s) 24, 189, 220, 761, 1006, 1127, 1383, 1419, 1486
Fnu4HI GCNGC 2 cut(s) 43, 1113
FokI GGATG 8 cut(s) 118, 317, 581, 644, 677, 742, 1351, 1406
FriOI GRGCYC 2 cut(s) 12, 412
Fsp4HI GCNGC 2 cut(s) 43, 1113
FspBI CTAG 2 cut(s) 155, 534
GlaI GCGC 2 cut(s) 200, 942
GluI GCNGC 2 cut(s) 43, 1113
GsuI CTGGAG 4 cut(s) 672, 722, 1000, 1181
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 4 cut(s) 195, 325, 444, 678
HapII CCGG 4 cut(s) 196, 490, 504, 988
HhaI GCGC 2 cut(s) 201, 943
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 9 cut(s) 28, 193, 224, 765, 1010, 1131, 1387, 1423, 1490
Hin6I GCGC 2 cut(s) 199, 941
HinP1I GCGC 2 cut(s) 199, 941
HinfI GANTC 3 cut(s) 545, 971, 1010
HpaII CCGG 4 cut(s) 196, 490, 504, 988
HphI GGTGA 5 cut(s) 288, 569, 1036, 1307, 1456
Hpy166II GTNNAC 3 cut(s) 296, 899, 1255
Hpy188I TCNGA 7 cut(s) 54, 130, 414, 1033, 1218, 1474, 1504
Hpy8I GTNNAC 3 cut(s) 296, 899, 1255
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 8 cut(s) 112, 162, 213, 244, 760, 1014, 1384, 1441
HpyCH4III ACNGT 1 cut(s) 1234
HpyCH4IV ACGT 1 cut(s) 1366
HpyCH4V TGCA 5 cut(s) 359, 422, 452, 929, 981
HpyF10VI GCNNNNNNNGC 7 cut(s) 192, 428, 441, 482, 548, 583, 872
HpyF3I CTNAG 7 cut(s) 51, 225, 250, 481, 564, 831, 1148
HpySE526I ACGT 1 cut(s) 1366
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 9 cut(s) 28, 193, 224, 765, 1010, 1131, 1387, 1423, 1490
HspAI GCGC 2 cut(s) 199, 941
KasI GGCGCC 1 cut(s) 198
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
Lsp1109I GCAGC 1 cut(s) 1124
LweI GCATC 5 cut(s) 148, 550, 720, 1004, 1312
MaeI CTAG 2 cut(s) 155, 534
MaeII ACGT 1 cut(s) 1366
MaeIII GTNAC 1 cut(s) 1295
MbiI CCGCTC 1 cut(s) 96
MflI RGATCY 1 cut(s) 1408
MhlI GDGCHC 2 cut(s) 12, 412
MluCI AATT 6 cut(s) 216, 403, 966, 982, 1189, 1222
Mly113I GGCGCC 1 cut(s) 199
MlyI GAGTC 1 cut(s) 1019
MmeI TCCRAC 2 cut(s) 305, 1477
MroNI GCCGGC 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 741
MseI TTAA 2 cut(s) 68, 177
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 4 cut(s) 196, 490, 504, 988
MspR9I CCNGG 7 cut(s) 441, 504, 651, 792, 988, 989, 1046
MvaI CCWGG 4 cut(s) 441, 651, 792, 1046
MwoI GCNNNNNNNGC 7 cut(s) 192, 428, 441, 482, 548, 583, 872
NaeI GCCGGC 1 cut(s) 197
NarI GGCGCC 1 cut(s) 199
NciI CCSGG 3 cut(s) 504, 988, 989
NcoI CCATGG 3 cut(s) 189, 761, 1127
NgoMIV GCCGGC 1 cut(s) 195
NlaIII CATG 9 cut(s) 28, 193, 224, 765, 1010, 1131, 1387, 1423, 1490
NlaIV GGNNCC 3 cut(s) 200, 597, 1410
NmeAIII GCCGAG 2 cut(s) 187, 969
NmuCI GTSAC 1 cut(s) 1295
NspI RCATGY 1 cut(s) 1387
PdiI GCCGGC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 2 cut(s) 545, 971
PflMI CCANNNNNTGG 1 cut(s) 398
PfoI TCCNGGA 2 cut(s) 649, 790
PkrI GCNGC 2 cut(s) 44, 1114
PleI GAGTC 1 cut(s) 1018
PluTI GGCGCC 1 cut(s) 202
PmaCI CACGTG 1 cut(s) 1367
PmlI CACGTG 1 cut(s) 1367
PpsI GAGTC 1 cut(s) 1018
Ppu21I YACGTR 1 cut(s) 1367
PpuMI RGGWCCY 1 cut(s) 596
Psp5II RGGWCCY 1 cut(s) 596
Psp6I CCWGG 4 cut(s) 439, 649, 790, 1044
PspCI CACGTG 1 cut(s) 1367
PspGI CCWGG 4 cut(s) 439, 649, 790, 1044
PspN4I GGNNCC 3 cut(s) 200, 597, 1410
PspPI GGNCC 6 cut(s) 193, 487, 596, 785, 1042, 1450
PspPPI RGGWCCY 1 cut(s) 596
PsuI RGATCY 1 cut(s) 1408
RsaI GTAC 3 cut(s) 636, 949, 1087
RsaNI GTAC 3 cut(s) 635, 948, 1086
RseI CAYNNNNRTG 1 cut(s) 23
Rsr2I CGGWCCG 1 cut(s) 487
RsrII CGGWCCG 1 cut(s) 487
SaqAI TTAA 2 cut(s) 68, 177
SatI GCNGC 2 cut(s) 43, 1113
Sau96I GGNCC 6 cut(s) 193, 487, 596, 785, 1042, 1450
SchI GAGTC 1 cut(s) 1019
ScrFI CCNGG 7 cut(s) 441, 504, 651, 792, 988, 989, 1046
SduI GDGCHC 2 cut(s) 12, 412
SfaNI GCATC 5 cut(s) 148, 550, 720, 1004, 1312
SfoI GGCGCC 1 cut(s) 200
SinI GGWCC 5 cut(s) 487, 596, 785, 1042, 1450
SmaI CCCGGG 1 cut(s) 989
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 1245
SmoI CTYRAG 1 cut(s) 1245
Sse9I AATT 6 cut(s) 216, 403, 966, 982, 1189, 1222
SsiI CCGC 3 cut(s) 42, 94, 485
SspDI GGCGCC 1 cut(s) 198
SspI AATATT 1 cut(s) 740
SspMI CTAG 2 cut(s) 155, 534
StyD4I CCNGG 7 cut(s) 439, 502, 649, 790, 986, 987, 1044
StyI CCWWGG 4 cut(s) 189, 761, 1127, 1440
TaaI ACNGT 1 cut(s) 1234
TaiI ACGT 1 cut(s) 1369
TaqI TCGA 2 cut(s) 36, 1388
TasI AATT 6 cut(s) 216, 403, 966, 982, 1189, 1222
TatI WGTACW 2 cut(s) 634, 947
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 2 cut(s) 545, 971
Tru1I TTAA 2 cut(s) 68, 177
Tru9I TTAA 2 cut(s) 68, 177
TseFI GTSAC 1 cut(s) 1295
TseI GCWGC 1 cut(s) 1112
Tsp45I GTSAC 1 cut(s) 1295
TspDTI ATGAA 7 cut(s) 122, 209, 270, 946, 978, 1092, 1503
TspGWI ACGGA 1 cut(s) 1471
TspMI CCCGGG 1 cut(s) 987
Van91I CCANNNNNTGG 1 cut(s) 398
VpaK11BI GGWCC 5 cut(s) 487, 596, 785, 1042, 1450
XagI CCTNNNNNAGG 1 cut(s) 1018
XapI RAATTY 2 cut(s) 1189, 1222
XceI RCATGY 1 cut(s) 1387
XmaI CCCGGG 1 cut(s) 987
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 2 cut(s) 155, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.