Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0015121

Physical Location & Seq

Genomic Coordinates Forward (+)

21600714 .. 21607778

Gene Structure 7065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1216700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGTGGGGCCAACGCTGGTGGGTCTGCAAGACCACCTGAAGCTGGCGAGGGAATACGCAATGGAAGGGCTCTACGACACCTCCCTGATCTTCTTCGATGGGGGCATTGCTCATATCAACAAGCACCTAAACACGCTTGATGATCCGTTGATTCGCGCAAAATGGATGAATGTAAAGAAAGCACTTTCTGAGGAAGCAGAGGTTGTGAAGCAATTAGATGCAGAGAGAAGAGCATTTAAGGGCATTCCTGCAGGCCGGCGCCCTTCGTCACCTCCAATTCATGCTAAGTCGTCATTTGTTTTTCAACCCTTAGATGAATACCCAACTTCTTCTGGTTTTCCCATGGATGATCCTGATGTATGGAGGCCACCAAGTCGGGACACTTCAGATGCAACTTGGGCTCGTAGCTCTGCAACCAAAACAGGCACACCTGGCCGTGGTGCAAAAGCTGGTGGATCAAGTAGGGCTAACTCAGGGGCACGAACATCTACTAGTGGAAAGAAAGGCACTGGTTCTGGCAAATCTAGCAAGGCATATTCAGTGAATGGTGATGCTGAAGATGGAAAGTCAAGGAGGTCACAGTATGTGGGTCCTGATCCTGATTTAGCTGAAATGCTTGAAAGGGACGTATTGGAAACCAGTCCTGGAGTGAGATGGGATGATGTTGCGGGTTTACAAGAAGCAAAAAGACTTTTAGAGGAAGCCGTTGTGCTTCCTTTGTGGATGCCTGAATATTTTCAGGGAATTAGGAGGCCGTGGAAAGGTGTTCTTATGTTCGGTCCTCCTGGAACGGGGAAGACATTACTTGCTAAAGCTGTTGCTACTGAGTGTCGCACAACTTTTTTCAATGTCTCCTCTGCTACTTTAGCTTCAAAATGGCGTGGAGAGAGTGAACGTATGGTTCAGTGCTTATTTGATCTTGCAAGAGCTTATGCGCCGAGTACAATCTTCATCGATGAAATTGATTCGCGTTGCAATTCCCAGGGGGCATCAGGGGAGCATGAGTCATCCAGAAGGGTGAAATCTGAAATTCTAGTTCAGGTAGATGGGGTCAACAATACTGGCACAAATGAAGATGGTACTCGTAAAATAGTGATGGTTCTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTCAGGAGGAGGCTGGAGAAACGTATATATATTCCTCTACCAAATTTTGAGAGCCGTAAAGCACTTATTCAGATAAATTTGAAAACCGTGGAGGTGGCCCCTGACGTAGATATGGATGATGTGGCTCGTCGAACAGAAGGATATAGTGGTGATGATCTCACAAACGTTTGCCGGGATGCTTCCTTGAATGGGATGAGGCGCAAAATAGCTGGAAAGACACGTGATGAGATTAAGAGCATGTCCAAGGACGATATTTCAAAGGATCCTGTTGCCATGTGCGACTTTGAAGAAGCCTTGGGGAAGGTCCAACGGAGTGTTTCTCAAGCTGATATTGAACGGCATGAGAAATGGTTTCACGAATTCGGATCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009825 GO:0009832 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0016049 GO:0030154 GO:0030865 GO:0031122 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044085 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0071554 GO:0071669 GO:0071840 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Aminotran_1_2 Vps4_C

Protein Analysis

505

Amino Acids

55.64

Weight (kDa)

6.71

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KATNA1_MIT	PF21126	11 - 71	5.2e-16	Katanin p60 subunit A1, MIT domain
AAA	PF00004	256 - 393	8.7e-36	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	415 - 457	1.7e-12	AAA+ lid domain
Vps4_C	PF09336	458 - 502	2e-09	Vps4 C terminal oligomerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80350
fragaria_vesca	FvH4_6g30820 FvH4_6g30820
malus_domestica	MD09G1216700.v1.1 MD17G1198800.v1.1
prunus_persica	Prupe.3G075400_v2.0.a1
pyrus_communis	pycom09g13400 pycom17g20350
rosa_chinensis	RchiOBHm_Chr2g0137251
rosa_laevigata	RLG00000019638
rosa_multiflora	Rmu_sc0000894.1_g000020
rosa_roxburghii	Rroxscaffold_2G00107270
rosa_rugosa	Rorug02G0339900 Rorug02G0340000
rosa_samantha	Rh2BG396400
rosa_wichuraiana	Rw2G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	258
AccII	CGCG	2 cut(s)	156, 970
AciI	CCGC	1 cut(s)	668
AclI	AACGTT	1 cut(s)	1305
AclWI	GGATC	7 cut(s)	137, 344, 463, 590, 1397, 1410, 1513
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	4 cut(s)	1029, 1183, 1216, 1499
AcuI	CTGAAG	3 cut(s)	59, 369, 576
AcvI	CACGTG	1 cut(s)	1361
AcyI	GRCGYC	1 cut(s)	259
AfaI	GTAC	2 cut(s)	943, 1081
AfiI	CCNNNNNNNGG	5 cut(s)	43, 437, 761, 791, 1329
AflIII	ACRYGT	1 cut(s)	1358
AgsI	TTSAA	9 cut(s)	305, 620, 847, 873, 1222, 1327, 1398, 1427, 1475
AhlI	ACTAGT	1 cut(s)	491
AjnI	CCWGG	4 cut(s)	430, 643, 784, 981
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	7 cut(s)	137, 344, 463, 590, 1397, 1410, 1513
AoxI	GGCC	6 cut(s)	8, 253, 365, 433, 752, 1236
ApeKI	GCWGC	1 cut(s)	1106
ApoI	RAATTY	4 cut(s)	1029, 1183, 1216, 1499
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	4 cut(s)	158, 261, 937, 1341
AspS9I	GGNCC	5 cut(s)	8, 590, 779, 1237, 1444
AsuC2I	CCSGG	1 cut(s)	1313
AsuHPI	GGTGA	4 cut(s)	261, 560, 1030, 1301
AvaII	GGWCC	3 cut(s)	590, 779, 1444
BaeGI	GKGCMC	1 cut(s)	481
BamHI	GGATCC	1 cut(s)	1402
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	2 cut(s)	72, 403
BbrPI	CACGTG	1 cut(s)	1361
BbsI	GAAGAC	1 cut(s)	803
BbvI	GCAGC	1 cut(s)	1118
BccI	CCATC	6 cut(s)	92, 554, 648, 1040, 1070, 1090
BceAI	ACGGC	5 cut(s)	420, 689, 739, 1179, 1493
BciT130I	CCWGG	4 cut(s)	432, 645, 786, 983
BcnI	CCSGG	1 cut(s)	1313
BcoDI	GTCTC	1 cut(s)	856
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	3 cut(s)	492, 525, 1034
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	262
BisI	GCNGC	1 cut(s)	1107
BlsI	GCNGC	1 cut(s)	1108
Bme1390I	CCNGG	5 cut(s)	432, 645, 786, 983, 1313
Bme18I	GGWCC	3 cut(s)	590, 779, 1444
BmgT120I	GGNCC	5 cut(s)	8, 590, 779, 1237, 1444
BmiI	GGNNCC	5 cut(s)	9, 260, 591, 1239, 1404
BmrFI	CCNGG	5 cut(s)	432, 645, 786, 983, 1313
BmsI	GCATC	6 cut(s)	208, 379, 541, 714, 998, 1306
BpiI	GAAGAC	1 cut(s)	803
BplI	GAGNNNNNCTC	2 cut(s)	1444, 1476
BpmI	CTGGAG	2 cut(s)	666, 1175
BpuEI	CTTGAG	1 cut(s)	1446
BpuMI	CCSGG	1 cut(s)	1313
Bsa29I	ATCGAT	1 cut(s)	954
BsaAI	YACGTR	1 cut(s)	1361
BsaHI	GRCGYC	1 cut(s)	259
BsaJI	CCNNGG	9 cut(s)	342, 436, 755, 981, 982, 1121, 1227, 1383, 1434
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 989, 1019
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 437, 761, 791, 1329
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	3 cut(s)	514, 639, 1066
Bse3DI	GCAATG	2 cut(s)	66, 105
BseBI	CCWGG	4 cut(s)	432, 645, 786, 983
BseCI	ATCGAT	1 cut(s)	954
BseDI	CCNNGG	9 cut(s)	342, 436, 755, 981, 982, 1121, 1227, 1383, 1434
BseGI	GGATG	8 cut(s)	171, 352, 664, 729, 1007, 1261, 1321, 1338
BseLI	CCNNNNNNNGG	5 cut(s)	43, 437, 761, 791, 1329
BseMI	GCAATG	2 cut(s)	66, 105
BseMII	CTCAG	4 cut(s)	180, 486, 816, 1156
BseNI	ACTGG	3 cut(s)	514, 639, 1066
BseRI	GAGGAG	2 cut(s)	844, 1162
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	1118
Bsh1236I	CGCG	2 cut(s)	156, 970
BshFI	GGCC	6 cut(s)	10, 255, 367, 435, 754, 1238
BshNI	GGYRCC	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	954
BsiSI	CCGG	2 cut(s)	256, 1312
BslFI	GGGAC	3 cut(s)	392, 638, 1139
BslI	CCNNNNNNNGG	5 cut(s)	43, 437, 761, 791, 1329
BsmAI	GTCTC	1 cut(s)	856
BsmFI	GGGAC	3 cut(s)	392, 638, 1139
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	6 cut(s)	10, 255, 367, 435, 754, 1238
Bsp1286I	GDGCHC	3 cut(s)	72, 403, 481
Bsp143I	GATC	9 cut(s)	87, 142, 349, 455, 595, 916, 1294, 1402, 1505
Bsp19I	CCATGG	2 cut(s)	342, 1121
BspACI	CCGC	1 cut(s)	668
BspANI	GGCC	6 cut(s)	10, 255, 367, 435, 754, 1238
BspCNI	CTCAG	4 cut(s)	181, 485, 817, 1155
BspDI	ATCGAT	1 cut(s)	954
BspFNI	CGCG	2 cut(s)	156, 970
BspLI	GGNNCC	5 cut(s)	9, 260, 591, 1239, 1404
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	7 cut(s)	137, 344, 463, 590, 1397, 1410, 1513
BspQI	GCTCTTC	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	258
BsrDI	GCAATG	2 cut(s)	66, 105
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	514, 639, 1066
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	9 cut(s)	342, 436, 755, 981, 982, 1121, 1227, 1383, 1434
BssMI	GATC	9 cut(s)	87, 142, 349, 455, 595, 916, 1294, 1402, 1505
BssNI	GRCGYC	1 cut(s)	259
BssT1I	CCWWGG	4 cut(s)	342, 1121, 1383, 1434
Bst2UI	CCWGG	4 cut(s)	432, 645, 786, 983
Bst4CI	ACNGT	2 cut(s)	582, 1228
Bst6I	CTCTTC	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	1361
BstC8I	GCNNGC	3 cut(s)	45, 253, 257
BstDEI	CTNAG	6 cut(s)	189, 285, 310, 472, 825, 1142
BstDSI	CCRYGG	5 cut(s)	342, 436, 755, 1121, 1227
BstF5I	GGATG	8 cut(s)	171, 352, 664, 729, 1007, 1261, 1321, 1338
BstFNI	CGCG	2 cut(s)	156, 970
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	4 cut(s)	158, 261, 937, 1341
BstKTI	GATC	9 cut(s)	90, 145, 352, 458, 598, 919, 1297, 1405, 1508
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	9 cut(s)	87, 142, 349, 455, 595, 916, 1294, 1402, 1505
BstMWI	GCNNNNNNNGC	4 cut(s)	398, 432, 525, 866
BstNI	CCWGG	4 cut(s)	432, 645, 786, 983
BstNSI	RCATGY	1 cut(s)	1381
BstSCI	CCNGG	5 cut(s)	430, 643, 784, 981, 1311
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	481
BstUI	CGCG	2 cut(s)	156, 970
BstV1I	GCAGC	1 cut(s)	1118
BstV2I	GAAGAC	1 cut(s)	803
BstX2I	RGATCY	1 cut(s)	1402
BstYI	RGATCY	1 cut(s)	1402
Bsu15I	ATCGAT	1 cut(s)	954
BsuRI	GGCC	6 cut(s)	10, 255, 367, 435, 754, 1238
BsuTUI	ATCGAT	1 cut(s)	954
BtgI	CCRYGG	5 cut(s)	342, 436, 755, 1121, 1227
BtsCI	GGATG	8 cut(s)	171, 352, 664, 729, 1007, 1261, 1321, 1338
BtsIMutI	CAGTG	3 cut(s)	507, 546, 911
Cac8I	GCNNGC	3 cut(s)	45, 253, 257
CfoI	GCGC	4 cut(s)	158, 261, 937, 1341
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	5 cut(s)	8, 590, 779, 1237, 1444
ClaI	ATCGAT	1 cut(s)	954
Csp6I	GTAC	2 cut(s)	942, 1080
CspCI	CAANNNNNGTGG	1 cut(s)	35
CviAII	CATG	7 cut(s)	281, 343, 1001, 1122, 1378, 1414, 1481
CviQI	GTAC	2 cut(s)	942, 1080
DdeI	CTNAG	6 cut(s)	189, 285, 310, 472, 825, 1142
DinI	GGCGCC	1 cut(s)	260
DpnI	GATC	9 cut(s)	89, 144, 351, 457, 597, 918, 1296, 1404, 1507
DpnII	GATC	9 cut(s)	87, 142, 349, 455, 595, 916, 1294, 1402, 1505
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco130I	CCWWGG	4 cut(s)	342, 1121, 1383, 1434
Eco24I	GRGCYC	2 cut(s)	72, 403
Eco47I	GGWCC	3 cut(s)	590, 779, 1444
Eco57I	CTGAAG	3 cut(s)	59, 369, 576
Eco72I	CACGTG	1 cut(s)	1361
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRI	GAATTC	1 cut(s)	1499
EcoRII	CCWGG	4 cut(s)	430, 643, 784, 981
EcoT14I	CCWWGG	4 cut(s)	342, 1121, 1383, 1434
EcoT38I	GRGCYC	2 cut(s)	72, 403
EgeI	GGCGCC	1 cut(s)	260
EheI	GGCGCC	1 cut(s)	260
ErhI	CCWWGG	4 cut(s)	342, 1121, 1383, 1434
FaeI	CATG	7 cut(s)	284, 346, 1004, 1125, 1381, 1417, 1484
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	3 cut(s)	392, 638, 1139
FatI	CATG	7 cut(s)	280, 342, 1000, 1121, 1377, 1413, 1480
FauI	CCCGC	1 cut(s)	661
Fnu4HI	GCNGC	1 cut(s)	1107
FokI	GGATG	8 cut(s)	178, 359, 671, 736, 994, 1268, 1328, 1345
FriOI	GRGCYC	2 cut(s)	72, 403
Fsp4HI	GCNGC	1 cut(s)	1107
FspBI	CTAG	3 cut(s)	492, 525, 1034
GlaI	GCGC	4 cut(s)	157, 260, 936, 1340
GluI	GCNGC	1 cut(s)	1107
GsuI	CTGGAG	2 cut(s)	666, 1175
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	6 cut(s)	10, 255, 367, 435, 754, 1238
HapII	CCGG	2 cut(s)	256, 1312
HhaI	GCGC	4 cut(s)	158, 261, 937, 1341
Hin1I	GRCGYC	1 cut(s)	259
Hin1II	CATG	7 cut(s)	284, 346, 1004, 1125, 1381, 1417, 1484
Hin6I	GCGC	4 cut(s)	156, 259, 935, 1339
HinP1I	GCGC	4 cut(s)	156, 259, 935, 1339
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HinfI	GANTC	3 cut(s)	151, 965, 1004
HpaII	CCGG	2 cut(s)	256, 1312
HphI	GGTGA	4 cut(s)	261, 560, 1030, 1301
Hpy166II	GTNNAC	3 cut(s)	674, 893, 1054
Hpy188I	TCNGA	5 cut(s)	190, 388, 1027, 1212, 1505
Hpy188III	TCNNGA	7 cut(s)	353, 377, 593, 599, 1011, 1144, 1496
Hpy8I	GTNNAC	3 cut(s)	674, 893, 1054
Hpy99I	CGWCG	1 cut(s)	1272
HpyAV	CCTTC	5 cut(s)	59, 273, 1008, 1271, 1435
HpyCH4III	ACNGT	2 cut(s)	582, 1228
HpyCH4IV	ACGT	6 cut(s)	627, 895, 1162, 1245, 1305, 1360
HpyCH4V	TGCA	8 cut(s)	28, 221, 251, 392, 413, 443, 923, 975
HpyF10VI	GCNNNNNNNGC	4 cut(s)	398, 432, 525, 866
HpyF3I	CTNAG	6 cut(s)	189, 285, 310, 472, 825, 1142
HpySE526I	ACGT	6 cut(s)	627, 895, 1162, 1245, 1305, 1360
Hsp92I	GRCGYC	1 cut(s)	259
Hsp92II	CATG	7 cut(s)	284, 346, 1004, 1125, 1381, 1417, 1484
HspAI	GCGC	4 cut(s)	156, 259, 935, 1339
KasI	GGCGCC	1 cut(s)	258
KroI	GCCGGC	1 cut(s)	255
KroNI	GCCGGC	1 cut(s)	257
Kzo9I	GATC	9 cut(s)	87, 142, 349, 455, 595, 916, 1294, 1402, 1505
LguI	GCTCTTC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	997
Lsp1109I	GCAGC	1 cut(s)	1118
LweI	GCATC	6 cut(s)	208, 379, 541, 714, 998, 1306
MaeI	CTAG	3 cut(s)	492, 525, 1034
MaeII	ACGT	6 cut(s)	627, 895, 1162, 1245, 1305, 1360
MaeIII	GTNAC	2 cut(s)	267, 576
MalI	GATC	9 cut(s)	89, 144, 351, 457, 597, 918, 1296, 1404, 1507
MboI	GATC	9 cut(s)	87, 142, 349, 455, 595, 916, 1294, 1402, 1505
MboII	GAAGA	9 cut(s)	82, 85, 240, 321, 569, 808, 940, 1085, 1439
MflI	RGATCY	1 cut(s)	1402
MhlI	GDGCHC	3 cut(s)	72, 403, 481
MluCI	AATT	9 cut(s)	212, 276, 744, 960, 976, 1029, 1183, 1216, 1499
Mly113I	GGCGCC	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	1013
MmeI	TCCRAC	1 cut(s)	1471
MroNI	GCCGGC	1 cut(s)	255
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	2 cut(s)	237, 1371
MspI	CCGG	2 cut(s)	256, 1312
MspR9I	CCNGG	5 cut(s)	432, 645, 786, 983, 1313
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	4 cut(s)	432, 645, 786, 983
MvnI	CGCG	2 cut(s)	156, 970
MwoI	GCNNNNNNNGC	4 cut(s)	398, 432, 525, 866
NaeI	GCCGGC	1 cut(s)	257
NarI	GGCGCC	1 cut(s)	259
NciI	CCSGG	1 cut(s)	1313
NcoI	CCATGG	2 cut(s)	342, 1121
NdeII	GATC	9 cut(s)	87, 142, 349, 455, 595, 916, 1294, 1402, 1505
NgoMIV	GCCGGC	1 cut(s)	255
NlaIII	CATG	7 cut(s)	284, 346, 1004, 1125, 1381, 1417, 1484
NlaIV	GGNNCC	5 cut(s)	9, 260, 591, 1239, 1404
NmeAIII	GCCGAG	1 cut(s)	963
NmuCI	GTSAC	2 cut(s)	267, 576
NspI	RCATGY	1 cut(s)	1381
PasI	CCCWGGG	1 cut(s)	982
PciSI	GCTCTTC	1 cut(s)	223
PctI	GAATGC	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	151, 965
PfoI	TCCNGGA	2 cut(s)	643, 784
PkrI	GCNGC	1 cut(s)	1108
PleI	GAGTC	1 cut(s)	1012
PluTI	GGCGCC	1 cut(s)	262
PmaCI	CACGTG	1 cut(s)	1361
PmlI	CACGTG	1 cut(s)	1361
PpsI	GAGTC	1 cut(s)	1012
Ppu21I	YACGTR	1 cut(s)	1361
PpuMI	RGGWCCY	1 cut(s)	590
Psp1406I	AACGTT	1 cut(s)	1305
Psp5II	RGGWCCY	1 cut(s)	590
Psp6I	CCWGG	4 cut(s)	430, 643, 784, 981
PspCI	CACGTG	1 cut(s)	1361
PspGI	CCWGG	4 cut(s)	430, 643, 784, 981
PspN4I	GGNNCC	5 cut(s)	9, 260, 591, 1239, 1404
PspPI	GGNCC	5 cut(s)	8, 590, 779, 1237, 1444
PspPPI	RGGWCCY	1 cut(s)	590
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	1402
RsaI	GTAC	2 cut(s)	943, 1081
RsaNI	GTAC	2 cut(s)	942, 1080
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	237, 1371
SatI	GCNGC	1 cut(s)	1107
Sau3AI	GATC	9 cut(s)	87, 142, 349, 455, 595, 916, 1294, 1402, 1505
Sau96I	GGNCC	5 cut(s)	8, 590, 779, 1237, 1444
SbfI	CCTGCAGG	1 cut(s)	253
SchI	GAGTC	1 cut(s)	1013
ScrFI	CCNGG	5 cut(s)	432, 645, 786, 983, 1313
SdaI	CCTGCAGG	1 cut(s)	253
SduI	GDGCHC	3 cut(s)	72, 403, 481
SfaNI	GCATC	6 cut(s)	208, 379, 541, 714, 998, 1306
SfcI	CTRYAG	1 cut(s)	249
SfoI	GGCGCC	1 cut(s)	260
SinI	GGWCC	3 cut(s)	590, 779, 1444
SmlI	CTYRAG	1 cut(s)	1461
SmoI	CTYRAG	1 cut(s)	1461
SpeI	ACTAGT	1 cut(s)	491
Sse8387I	CCTGCAGG	1 cut(s)	253
Sse9I	AATT	9 cut(s)	212, 276, 744, 960, 976, 1029, 1183, 1216, 1499
SsiI	CCGC	1 cut(s)	668
SspDI	GGCGCC	1 cut(s)	258
SspI	AATATT	1 cut(s)	734
SspMI	CTAG	3 cut(s)	492, 525, 1034
StyD4I	CCNGG	5 cut(s)	430, 643, 784, 981, 1311
StyI	CCWWGG	4 cut(s)	342, 1121, 1383, 1434
TaaI	ACNGT	2 cut(s)	582, 1228
TaiI	ACGT	6 cut(s)	630, 898, 1165, 1248, 1308, 1363
TaqI	TCGA	3 cut(s)	96, 954, 1270
TaqII	GACCGA	1 cut(s)	767
TasI	AATT	9 cut(s)	212, 276, 744, 960, 976, 1029, 1183, 1216, 1499
TatI	WGTACW	1 cut(s)	941
TfiI	GAWTC	2 cut(s)	151, 965
Tru1I	TTAA	2 cut(s)	237, 1371
Tru9I	TTAA	2 cut(s)	237, 1371
TscAI	CASTG	3 cut(s)	514, 546, 911
TseFI	GTSAC	2 cut(s)	267, 576
TseI	GCWGC	1 cut(s)	1106
Tsp45I	GTSAC	2 cut(s)	267, 576
TspDTI	ATGAA	6 cut(s)	182, 269, 330, 940, 972, 1086
TspGWI	ACGGA	2 cut(s)	135, 1465
TspRI	CASTG	3 cut(s)	514, 546, 911
VpaK11BI	GGWCC	3 cut(s)	590, 779, 1444
XapI	RAATTY	4 cut(s)	1029, 1183, 1216, 1499
XceI	RCATGY	1 cut(s)	1381
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	3 cut(s)	492, 525, 1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.