FvH4_6g35990

NUMOD3 motif (2 copies)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
28354955 .. 28359813
4859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35990.t3

Sequence Viewer

Length: 1539 bp
ATGCAAAGGATAACCTATGAGATGACGGTCAAAATGAAGTTGGTTAACCTTGGACATGCTCAAACGAAGGAGACAAGAACAAAAATTGGGATTGGAGTCAGGATGGGGTGGGAAAAACGGCGGCAGAAGCTATCATTGCAGGAAAGTTGCTGTTATGAATGGCAGAACTTAATTGCCGAAGCCTCTAGACGAGGTTATGACGGTGAGGAGGAATTGCAATGGGATTCCTACACGATCTTAGATGGAAAGCTTACAGAGGAGTATCTAGAGAGTATTGAACAAAGGAAGACAATGCGAAGGCCAAAAGGAAGCAAGAGAGCGCCCAAATCTCTTGAGCAGAGAAGGAAGATCTCACAAGCAATCTCAGCAAAATGGAATGATCCGGAGTACCGTGACCGGGTTTGCTCTGCCTTGTCAAAATATTACGATGCATCATATGGAGCTGAAAGGAAACCAAGAAAGAGGTCACCTAGTAATACAGACTCCCCAAGAAGAAGCCCTACAAAGAAAAAGGAAAAGGTTTCTGCAGAAAAAGGGATTTGGAGGAATGAAATTAAACCCCAGAAACTAAAGTCGAGGAGAAGTAAAGGACCCATGTATAAGGATCCTCTGGCAAGTTCTAAGATGGAGATGATAAAGAATATCAGAGCACAAAGAGCGGCTACTGAAACCAAGAAAACAGAAGCCATAGAACGAGCCAGACTATTGATTGCTGAAGCTGAGAAGGCTGCCATGGCTCTTGAGGCTTCTGCAACAAAGAGCCCTGTTGCTCGAGCTTCCCTCATTGAAACTCGACAGCTTATAGCTGAGGCAATTCGGTCAATTGAATCTATAGACACAATGCAGAGCTCTTCACATGAGAATGAAGAGCCTTCTGGTGCATCAAATGAAGTGACTAGCCAGAGTGAGAAGGAAAACTGGTTTTGGGGTCCGACTGAAGCAGATGATGGAAAGGTAAATGGCACTCCAACCTTTCCATCCCATGAGAATGAAAAGCCTTCAGTCCTACCAGATGAAGTGATTAGCGAAGTTGAGAAGGAAACTGAGATTTGGGGTTTGACTGAAGCAGATAATGGAAAGGTAAATGGCACCCAGACCTTCTCCATCAGTGAGAACAAAGACTCTTTATTCGTATCTGATGAAGTGCTTGGCCAGATAGAGAAGGAAACATATACAGGGTTTGGTAGTATGACTGAAGCATACAATGGAAAAGTAAATGGCATCCCATCCTTATCGTCGATTAAAGATGAGGACCTTGGCTTTGACGAGTTCACCTTGCAGGATTTGCTCAGTGATGAAGAAGAGCTTTCCCTAATGAGGTCCGACGCTGATGCTTTGCCTCGGTTTAGTTTGAAGCAATCTGATTCAAGCATTCAGTCAGATGGAAGAGAATCAAATGAGAAGCATGAATGCAACAAGAATCTTCAATTCAATGAGACCAAAGTTGAATCCCAAGAAGATGAAGCACCTTCAATACCAGCTACTGTAACCAAAAAGTGGGTCCGAGGGAGACTAGTTGAAGTAGCAGAAGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

57.95

Weight (kDa)

5.66

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1088
AccB7I CCANNNNNTGG 1 cut(s) 1497
AccBSI CCGCTC 1 cut(s) 659
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 2 cut(s) 121, 659
AclWI GGATC 3 cut(s) 374, 599, 612
AcoI YGGCCR 1 cut(s) 1150
AcuI CTGAAG 5 cut(s) 735, 957, 984, 1083, 1215
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 397, 1317, 1497
AhlI ACTAGT 1 cut(s) 1513
Alw21I GWGCWC 2 cut(s) 652, 851
Alw26I GTCTC 3 cut(s) 65, 1430, 1504
AlwI GGATC 3 cut(s) 374, 599, 612
AlwNI CAGNNNCTG 1 cut(s) 1484
Ama87I CYCGRG 1 cut(s) 771
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 2 cut(s) 299, 1150
ApeKI GCWGC 1 cut(s) 728
ArsI GACNNNNNNTTYG 6 cut(s) 1112, 1144, 1244, 1276, 1485, 1517
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 5 cut(s) 590, 929, 1252, 1320, 1501
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 3 cut(s) 215, 459, 1264
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 5 cut(s) 590, 929, 1252, 1320, 1501
BalI TGGCCA 1 cut(s) 1152
BamHI GGATCC 1 cut(s) 604
BanI GGYRCC 1 cut(s) 1088
BanII GRGCYC 2 cut(s) 764, 851
BarI GAAGNNNNNNTAC 2 cut(s) 484, 516
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 2 cut(s) 652, 851
BbvCI CCTCAGC 1 cut(s) 807
BbvI GCAGC 1 cut(s) 715
BccI CCATC 8 cut(s) 97, 236, 619, 941, 985, 1112, 1234, 1376
BceAI ACGGC 1 cut(s) 134
BcgI CGANNNNNNTGC 2 cut(s) 1313, 1347
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 3 cut(s) 65, 1430, 1504
BcuI ACTAGT 1 cut(s) 1513
BfaI CTAG 5 cut(s) 186, 266, 471, 897, 1514
BfmI CTRYAG 2 cut(s) 525, 831
BfoI RGCGCY 1 cut(s) 323
BglII AGATCT 1 cut(s) 348
BisI GCNGC 3 cut(s) 122, 660, 729
BlsI GCNGC 3 cut(s) 123, 661, 730
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 5 cut(s) 590, 929, 1252, 1320, 1501
BmeT110I CYCGRG 1 cut(s) 771
BmgT120I GGNCC 5 cut(s) 590, 929, 1252, 1320, 1501
BmiI GGNNCC 5 cut(s) 592, 606, 930, 1090, 1502
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 5 cut(s) 418, 440, 890, 1230, 1321
BpiI GAAGAC 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 765, 797
Bpu10I CCTNAGC 1 cut(s) 807
BpuEI CTTGAG 2 cut(s) 353, 761
BpuMI CCSGG 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 1430
BsaJI CCNNGG 5 cut(s) 49, 732, 1255, 1340, 1504
BsaWI WCCGGW 1 cut(s) 382
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 1317, 1497
Bse1I ACTGG 1 cut(s) 923
Bse3DI GCAATG 2 cut(s) 134, 224
BseAI TCCGGA 1 cut(s) 382
BseDI CCNNGG 5 cut(s) 49, 732, 1255, 1340, 1504
BseGI GGATG 4 cut(s) 108, 977, 1221, 1226
BseLI CCNNNNNNNGG 3 cut(s) 397, 1317, 1497
BseMI GCAATG 2 cut(s) 134, 224
BseMII CTCAG 5 cut(s) 378, 711, 798, 1035, 1303
BseNI ACTGG 1 cut(s) 923
BseRI GAGGAG 3 cut(s) 221, 272, 592
BseXI GCAGC 1 cut(s) 715
BshFI GGCC 2 cut(s) 301, 1152
BshNI GGYRCC 1 cut(s) 1088
BsiHKAI GWGCWC 2 cut(s) 652, 851
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 2 cut(s) 383, 397
BslI CCNNNNNNNGG 3 cut(s) 397, 1317, 1497
BsmAI GTCTC 3 cut(s) 65, 1430, 1504
BsmI GAATGC 2 cut(s) 1371, 1415
BsnI GGCC 2 cut(s) 301, 1152
Bso31I GGTCTC 1 cut(s) 1430
BsoBI CYCGRG 1 cut(s) 771
Bsp1286I GDGCHC 3 cut(s) 652, 764, 851
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 4 cut(s) 234, 348, 379, 604
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 2 cut(s) 121, 659
BspANI GGCC 2 cut(s) 301, 1152
BspCNI CTCAG 5 cut(s) 377, 712, 799, 1036, 1302
BspEI TCCGGA 1 cut(s) 382
BspLI GGNNCC 5 cut(s) 592, 606, 930, 1090, 1502
BspMAI CTGCAG 1 cut(s) 529
BspPI GGATC 3 cut(s) 374, 599, 612
BspQI GCTCTTC 3 cut(s) 856, 861, 1296
BspT107I GGYRCC 1 cut(s) 1088
BspTNI GGTCTC 1 cut(s) 1430
BsrBI CCGCTC 1 cut(s) 659
BsrDI GCAATG 2 cut(s) 134, 224
BsrI ACTGG 1 cut(s) 923
BssECI CCNNGG 5 cut(s) 49, 732, 1255, 1340, 1504
BssMI GATC 4 cut(s) 234, 348, 379, 604
BssT1I CCWWGG 3 cut(s) 49, 732, 1255
Bst4CI ACNGT 4 cut(s) 28, 203, 392, 1486
Bst6I CTCTTC 4 cut(s) 856, 861, 1296, 1381
BstAPI GCANNNNNTGC 1 cut(s) 1285
BstDEI CTNAG 8 cut(s) 238, 364, 621, 720, 807, 1044, 1289, 1536
BstDSI CCRYGG 1 cut(s) 732
BstEII GGTNACC 1 cut(s) 465
BstF5I GGATG 4 cut(s) 108, 977, 1221, 1226
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 4 cut(s) 237, 351, 382, 607
BstMAI GTCTC 3 cut(s) 65, 1430, 1504
BstMBI GATC 4 cut(s) 234, 348, 379, 604
BstMWI GCNNNNNNNGC 9 cut(s) 127, 136, 365, 656, 725, 734, 743, 1285, 1532
BstNSI RCATGY 1 cut(s) 59
BstPI GGTNACC 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 396
BstSFI CTRYAG 2 cut(s) 525, 831
BstV1I GCAGC 1 cut(s) 715
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 2 cut(s) 348, 604
BstYI RGATCY 2 cut(s) 348, 604
BsuRI GGCC 2 cut(s) 301, 1152
BtgI CCRYGG 1 cut(s) 732
BtsCI GGATG 4 cut(s) 108, 977, 1221, 1226
BtsIMutI CAGTG 2 cut(s) 1114, 1297
CaiI CAGNNNCTG 1 cut(s) 1484
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 5 cut(s) 590, 929, 1252, 1320, 1501
CseI GACGC 1 cut(s) 1334
Csp6I GTAC 1 cut(s) 388
CviAII CATG 6 cut(s) 56, 595, 733, 857, 983, 1406
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 8 cut(s) 238, 364, 621, 720, 807, 1044, 1289, 1536
DpnI GATC 4 cut(s) 236, 350, 381, 606
DpnII GATC 4 cut(s) 234, 348, 379, 604
EaeI YGGCCR 1 cut(s) 1150
Eam1104I CTCTTC 4 cut(s) 856, 861, 1296, 1381
EarI CTCTTC 4 cut(s) 856, 861, 1296, 1381
Ecl136II GAGCTC 1 cut(s) 849
Eco130I CCWWGG 3 cut(s) 49, 732, 1255
Eco24I GRGCYC 2 cut(s) 764, 851
Eco31I GGTCTC 1 cut(s) 1430
Eco47I GGWCC 5 cut(s) 590, 929, 1252, 1320, 1501
Eco53kI GAGCTC 1 cut(s) 849
Eco57I CTGAAG 5 cut(s) 735, 957, 984, 1083, 1215
Eco88I CYCGRG 1 cut(s) 771
Eco91I GGTNACC 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 849
EcoO109I RGGNCCY 2 cut(s) 590, 1252
EcoO65I GGTNACC 1 cut(s) 465
EcoT14I CCWWGG 3 cut(s) 49, 732, 1255
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 2 cut(s) 764, 851
ErhI CCWWGG 3 cut(s) 49, 732, 1255
FaeI CATG 6 cut(s) 59, 598, 736, 860, 986, 1409
FalI AAGNNNNNCTT 2 cut(s) 1290, 1322
FatI CATG 6 cut(s) 55, 594, 732, 856, 982, 1405
FauNDI CATATG 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 122, 660, 729
FokI GGATG 4 cut(s) 115, 964, 1208, 1213
FriOI GRGCYC 2 cut(s) 764, 851
Fsp4HI GCNGC 3 cut(s) 122, 660, 729
FspBI CTAG 5 cut(s) 186, 266, 471, 897, 1514
GlaI GCGC 1 cut(s) 321
GluI GCNGC 3 cut(s) 122, 660, 729
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 2 cut(s) 301, 1152
HapII CCGG 2 cut(s) 383, 397
HgaI GACGC 1 cut(s) 1334
HhaI GCGC 1 cut(s) 322
Hin1II CATG 6 cut(s) 59, 598, 736, 860, 986, 1409
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 9 cut(s) 96, 224, 482, 827, 1121, 1364, 1391, 1420, 1448
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 2 cut(s) 383, 397
HphI GGTGA 3 cut(s) 215, 459, 1264
Hpy166II GTNNAC 2 cut(s) 46, 1272
Hpy188I TCNGA 7 cut(s) 647, 933, 1138, 1324, 1363, 1381, 1505
Hpy188III TCNNGA 6 cut(s) 100, 186, 266, 332, 383, 740
Hpy8I GTNNAC 2 cut(s) 46, 1272
Hpy99I CGWCG 2 cut(s) 1240, 1328
HpyCH4III ACNGT 4 cut(s) 28, 203, 392, 1486
HpyF10VI GCNNNNNNNGC 9 cut(s) 127, 136, 365, 656, 725, 734, 743, 1285, 1532
HpyF3I CTNAG 8 cut(s) 238, 364, 621, 720, 807, 1044, 1289, 1536
Hsp92II CATG 6 cut(s) 59, 598, 736, 860, 986, 1409
HspAI GCGC 1 cut(s) 320
Kpn2I TCCGGA 1 cut(s) 382
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 4 cut(s) 234, 348, 379, 604
LguI GCTCTTC 3 cut(s) 856, 861, 1296
LmnI GCTCC 1 cut(s) 440
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 5 cut(s) 418, 440, 890, 1230, 1321
MaeI CTAG 5 cut(s) 186, 266, 471, 897, 1514
MaeIII GTNAC 4 cut(s) 392, 465, 892, 1486
MalI GATC 4 cut(s) 236, 350, 381, 606
MbiI CCGCTC 1 cut(s) 659
MboI GATC 4 cut(s) 234, 348, 379, 604
MfeI CAATTG 1 cut(s) 822
MflI RGATCY 2 cut(s) 348, 604
MhlI GDGCHC 3 cut(s) 652, 764, 851
MlsI TGGCCA 1 cut(s) 1152
MluCI AATT 7 cut(s) 84, 171, 212, 552, 813, 822, 1427
MluNI TGGCCA 1 cut(s) 1152
MlyI GAGTC 3 cut(s) 105, 476, 1115
MmeI TCCRAC 3 cut(s) 956, 992, 1347
Mox20I TGGCCA 1 cut(s) 1152
Mph1103I ATGCAT 1 cut(s) 433
MroI TCCGGA 1 cut(s) 382
MscI TGGCCA 1 cut(s) 1152
MseI TTAA 4 cut(s) 45, 170, 555, 1242
MslI CAYNNNNRTG 2 cut(s) 861, 987
Msp20I TGGCCA 1 cut(s) 1152
MspI CCGG 2 cut(s) 383, 397
MspR9I CCNGG 1 cut(s) 398
MunI CAATTG 1 cut(s) 822
Mva1269I GAATGC 2 cut(s) 1371, 1415
MwoI GCNNNNNNNGC 9 cut(s) 127, 136, 365, 656, 725, 734, 743, 1285, 1532
NciI CCSGG 1 cut(s) 398
NcoI CCATGG 1 cut(s) 732
NdeI CATATG 1 cut(s) 436
NdeII GATC 4 cut(s) 234, 348, 379, 604
NlaIII CATG 6 cut(s) 59, 598, 736, 860, 986, 1409
NlaIV GGNNCC 5 cut(s) 592, 606, 930, 1090, 1502
NmuCI GTSAC 3 cut(s) 392, 465, 892
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 771
PciSI GCTCTTC 3 cut(s) 856, 861, 1296
PctI GAATGC 2 cut(s) 1371, 1415
PfeI GAWTC 6 cut(s) 224, 827, 1364, 1391, 1420, 1448
PflMI CCANNNNNTGG 1 cut(s) 1497
PkrI GCNGC 3 cut(s) 123, 661, 730
PleI GAGTC 3 cut(s) 104, 476, 1115
PpsI GAGTC 3 cut(s) 104, 476, 1115
PpuMI RGGWCCY 2 cut(s) 590, 1252
Psp124BI GAGCTC 1 cut(s) 851
Psp5II RGGWCCY 2 cut(s) 590, 1252
PspEI GGTNACC 1 cut(s) 465
PspN4I GGNNCC 5 cut(s) 592, 606, 930, 1090, 1502
PspPI GGNCC 5 cut(s) 590, 929, 1252, 1320, 1501
PspPPI RGGWCCY 2 cut(s) 590, 1252
PspXI VCTCGAGB 1 cut(s) 771
PstI CTGCAG 1 cut(s) 529
PstNI CAGNNNCTG 1 cut(s) 1484
PsuI RGATCY 2 cut(s) 348, 604
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 2 cut(s) 861, 987
SacI GAGCTC 1 cut(s) 851
SapI GCTCTTC 3 cut(s) 856, 861, 1296
SaqAI TTAA 4 cut(s) 45, 170, 555, 1242
SatI GCNGC 3 cut(s) 122, 660, 729
Sau3AI GATC 4 cut(s) 234, 348, 379, 604
Sau96I GGNCC 5 cut(s) 590, 929, 1252, 1320, 1501
SchI GAGTC 3 cut(s) 105, 476, 1115
ScrFI CCNGG 1 cut(s) 398
SduI GDGCHC 3 cut(s) 652, 764, 851
SfaNI GCATC 5 cut(s) 418, 440, 890, 1230, 1321
SfcI CTRYAG 2 cut(s) 525, 831
Sfr274I CTCGAG 1 cut(s) 771
SinI GGWCC 5 cut(s) 590, 929, 1252, 1320, 1501
SlaI CTCGAG 1 cut(s) 771
SmiMI CAYNNNNRTG 2 cut(s) 861, 987
SmlI CTYRAG 3 cut(s) 332, 740, 771
SmoI CTYRAG 3 cut(s) 332, 740, 771
SpeI ACTAGT 1 cut(s) 1513
Sse9I AATT 7 cut(s) 84, 171, 212, 552, 813, 822, 1427
SsiI CCGC 2 cut(s) 121, 659
SspI AATATT 1 cut(s) 422
SspMI CTAG 5 cut(s) 186, 266, 471, 897, 1514
SstI GAGCTC 1 cut(s) 851
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 3 cut(s) 49, 732, 1255
TaaI ACNGT 4 cut(s) 28, 203, 392, 1486
TaqI TCGA 4 cut(s) 575, 772, 793, 1238
TaqII GACCGA 1 cut(s) 807
TasI AATT 7 cut(s) 84, 171, 212, 552, 813, 822, 1427
TauI GCSGC 2 cut(s) 124, 662
TfiI GAWTC 6 cut(s) 224, 827, 1364, 1391, 1420, 1448
Tru1I TTAA 4 cut(s) 45, 170, 555, 1242
Tru9I TTAA 4 cut(s) 45, 170, 555, 1242
TscAI CASTG 2 cut(s) 1114, 1297
TseFI GTSAC 3 cut(s) 392, 465, 892
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 3 cut(s) 392, 465, 892
TspRI CASTG 2 cut(s) 1114, 1297
Van91I CCANNNNNTGG 1 cut(s) 1497
VpaK11BI GGWCC 5 cut(s) 590, 929, 1252, 1320, 1501
XbaI TCTAGA 2 cut(s) 185, 265
XceI RCATGY 1 cut(s) 59
XhoI CTCGAG 1 cut(s) 771
XspI CTAG 5 cut(s) 186, 266, 471, 897, 1514
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.