NUMOD3 motif (2 copies)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G53800 AT1G53800 AT1G53800 AT1G53800 |
| fragaria_vesca | FvH4_6g35990 FvH4_6g35990 FvH4_6g35990 FvH4_6g35990 |
| malus_domestica | MD09G1172000.v1.1 MD17G1154900.v1.1 |
| prunus_persica | Prupe.3G030400_v2.0.a1 Prupe.3G030400_v2.0.a1 Prupe.3G030400_v2.0.a1 Prupe.3G030400_v2.0.a1 |
| pyrus_communis | pycom09g08940 pycom17g14770 |
| rosa_chinensis | RchiOBHm_Chr2g0148111 |
| rosa_laevigata | RLG00000020314 |
| rosa_multiflora | Rmu_sc0001516.1_g000037 Rmu_sc0012028.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00099140 |
| rosa_rugosa | Rorug02G0403500 |
| rosa_samantha | Rh2AG461400 Rh2BG475200 Rh2CG448500 Rh2DG483800 |
| rosa_wichuraiana | Rw2G037670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 1244 |
| Acc36I | ACCTGC | 1 cut(s) | 1553 |
| AccB1I | GGYRCC | 1 cut(s) | 1466 |
| AccII | CGCG | 3 cut(s) | 900, 1118, 1974 |
| AciI | CCGC | 6 cut(s) | 625, 1556, 1577, 1950, 1953, 1974 |
| AclWI | GGATC | 6 cut(s) | 881, 997, 1010, 1103, 1116, 1836 |
| AcoI | YGGCCR | 1 cut(s) | 330 |
| AcsI | RAATTY | 3 cut(s) | 78, 179, 280 |
| AcuI | CTGAAG | 6 cut(s) | 405, 473, 705, 1362, 1461, 1593 |
| AfaI | GTAC | 4 cut(s) | 91, 1103, 1570, 1618 |
| AgsI | TTSAA | 8 cut(s) | 132, 205, 211, 272, 372, 1292, 1331, 1988 |
| AjnI | CCWGG | 1 cut(s) | 347 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 197, 229, 967, 999 |
| Alw21I | GWGCWC | 5 cut(s) | 8, 347, 829, 1156, 1775 |
| Alw26I | GTCTC | 5 cut(s) | 105, 248, 572, 840, 1412 |
| AlwI | GGATC | 6 cut(s) | 881, 997, 1010, 1103, 1116, 1836 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1169, 1223 |
| Ama87I | CYCGRG | 4 cut(s) | 362, 1244, 1275, 1712 |
| AoxI | GGCC | 4 cut(s) | 65, 330, 806, 1239 |
| ApeKI | GCWGC | 6 cut(s) | 657, 1163, 1166, 1232, 1253, 1878 |
| ApoI | RAATTY | 3 cut(s) | 78, 179, 280 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1619, 1651 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 486 |
| AspS9I | GGNCC | 6 cut(s) | 947, 1240, 1678, 1717, 1810, 1902 |
| AsuHPI | GGTGA | 3 cut(s) | 562, 722, 1547 |
| AvaI | CYCGRG | 4 cut(s) | 362, 1244, 1275, 1712 |
| AvaII | GGWCC | 5 cut(s) | 947, 1678, 1717, 1810, 1902 |
| AxyI | CCTNAGG | 1 cut(s) | 531 |
| BaeGI | GKGCMC | 1 cut(s) | 222 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 694, 727 |
| BalI | TGGCCA | 1 cut(s) | 332 |
| BamHI | GGATCC | 2 cut(s) | 1002, 1108 |
| BanI | GGYRCC | 1 cut(s) | 1466 |
| BanII | GRGCYC | 2 cut(s) | 8, 1268 |
| BbsI | GAAGAC | 1 cut(s) | 1377 |
| Bbv12I | GWGCWC | 5 cut(s) | 8, 347, 829, 1156, 1775 |
| BbvCI | CCTCAGC | 2 cut(s) | 1311, 1671 |
| BbvI | GCAGC | 6 cut(s) | 644, 1153, 1175, 1240, 1244, 1890 |
| BccI | CCATC | 2 cut(s) | 701, 1123 |
| BceAI | ACGGC | 2 cut(s) | 1175, 1359 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1235, 1269, 1703, 1737, 1811, 1845 |
| BciT130I | CCWGG | 1 cut(s) | 349 |
| BciVI | GTATCC | 1 cut(s) | 695 |
| BclI | TGATCA | 1 cut(s) | 495 |
| BcoDI | GTCTC | 5 cut(s) | 105, 248, 572, 840, 1412 |
| BfaI | CTAG | 4 cut(s) | 693, 1044, 1203, 1664 |
| BfmI | CTRYAG | 2 cut(s) | 722, 1335 |
| BfuAI | ACCTGC | 1 cut(s) | 1553 |
| BfuI | GTATCC | 1 cut(s) | 695 |
| BisI | GCNGC | 8 cut(s) | 626, 658, 1164, 1167, 1233, 1254, 1879, 1953 |
| BlsI | GCNGC | 8 cut(s) | 627, 659, 1165, 1168, 1234, 1255, 1880, 1954 |
| Bme1390I | CCNGG | 1 cut(s) | 349 |
| Bme18I | GGWCC | 5 cut(s) | 947, 1678, 1717, 1810, 1902 |
| BmeT110I | CYCGRG | 4 cut(s) | 362, 1244, 1275, 1712 |
| BmgT120I | GGNCC | 6 cut(s) | 947, 1240, 1678, 1717, 1810, 1902 |
| BmiI | GGNNCC | 6 cut(s) | 1004, 1110, 1468, 1545, 1719, 1903 |
| BmrFI | CCNGG | 1 cut(s) | 349 |
| BmrI | ACTGGG | 1 cut(s) | 1437 |
| BmsI | GCATC | 2 cut(s) | 1520, 1657 |
| BmuI | ACTGGG | 1 cut(s) | 1437 |
| BpiI | GAAGAC | 1 cut(s) | 1377 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1269, 1301 |
| BpmI | CTGGAG | 3 cut(s) | 82, 230, 1615 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1311, 1671 |
| BpuEI | CTTGAG | 1 cut(s) | 860 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1058 |
| BsaI | GGTCTC | 1 cut(s) | 105 |
| BsaJI | CCNNGG | 7 cut(s) | 233, 333, 452, 556, 918, 1236, 1486 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1613, 1643 |
| Bse1I | ACTGG | 3 cut(s) | 671, 1432, 1776 |
| Bse21I | CCTNAGG | 1 cut(s) | 531 |
| Bse3DI | GCAATG | 4 cut(s) | 525, 641, 1688, 1843 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1058 |
| BseBI | CCWGG | 1 cut(s) | 349 |
| BseDI | CCNNGG | 7 cut(s) | 233, 333, 452, 556, 918, 1236, 1486 |
| BseGI | GGATG | 3 cut(s) | 228, 400, 1414 |
| BseJI | GATNNNNATC | 1 cut(s) | 1058 |
| BseMI | GCAATG | 4 cut(s) | 525, 641, 1688, 1843 |
| BseMII | CTCAG | 5 cut(s) | 109, 1067, 1215, 1302, 1662 |
| BseNI | ACTGG | 3 cut(s) | 671, 1432, 1776 |
| BseRI | GAGGAG | 3 cut(s) | 779, 1553, 1688 |
| BseSI | GKGCMC | 1 cut(s) | 222 |
| BseXI | GCAGC | 6 cut(s) | 644, 1153, 1175, 1240, 1244, 1890 |
| Bsh1236I | CGCG | 3 cut(s) | 900, 1118, 1974 |
| Bsh1285I | CGRYCG | 1 cut(s) | 904 |
| BshFI | GGCC | 4 cut(s) | 67, 332, 808, 1241 |
| BshNI | GGYRCC | 1 cut(s) | 1466 |
| BsiEI | CGRYCG | 1 cut(s) | 904 |
| BsiHKAI | GWGCWC | 5 cut(s) | 8, 347, 829, 1156, 1775 |
| BsiHKCI | CYCGRG | 4 cut(s) | 362, 1244, 1275, 1712 |
| BslFI | GGGAC | 3 cut(s) | 1354, 1880, 1915 |
| BsmAI | GTCTC | 5 cut(s) | 105, 248, 572, 840, 1412 |
| BsmFI | GGGAC | 3 cut(s) | 1354, 1880, 1915 |
| BsmI | GAATGC | 2 cut(s) | 304, 1880 |
| BsnI | GGCC | 4 cut(s) | 67, 332, 808, 1241 |
| Bso31I | GGTCTC | 1 cut(s) | 105 |
| BsoBI | CYCGRG | 4 cut(s) | 362, 1244, 1275, 1712 |
| Bsp1286I | GDGCHC | 7 cut(s) | 8, 222, 347, 829, 1156, 1268, 1775 |
| Bsp1407I | TGTACA | 1 cut(s) | 1101 |
| Bsp143I | GATC | 6 cut(s) | 495, 741, 886, 1002, 1108, 1828 |
| Bsp19I | CCATGG | 4 cut(s) | 333, 452, 1236, 1486 |
| Bsp68I | TCGCGA | 2 cut(s) | 900, 1118 |
| BspACI | CCGC | 6 cut(s) | 625, 1556, 1577, 1950, 1953, 1974 |
| BspANI | GGCC | 4 cut(s) | 67, 332, 808, 1241 |
| BspCNI | CTCAG | 5 cut(s) | 108, 1068, 1216, 1303, 1663 |
| BspFNI | CGCG | 3 cut(s) | 900, 1118, 1974 |
| BspLI | GGNNCC | 6 cut(s) | 1004, 1110, 1468, 1545, 1719, 1903 |
| BspMAI | CTGCAG | 1 cut(s) | 726 |
| BspMI | ACCTGC | 1 cut(s) | 1553 |
| BspPI | GGATC | 6 cut(s) | 881, 997, 1010, 1103, 1116, 1836 |
| BspT107I | GGYRCC | 1 cut(s) | 1466 |
| BspTNI | GGTCTC | 1 cut(s) | 105 |
| BsrDI | GCAATG | 4 cut(s) | 525, 641, 1688, 1843 |
| BsrGI | TGTACA | 1 cut(s) | 1101 |
| BsrI | ACTGG | 3 cut(s) | 671, 1432, 1776 |
| BssECI | CCNNGG | 7 cut(s) | 233, 333, 452, 556, 918, 1236, 1486 |
| BssMI | GATC | 6 cut(s) | 495, 741, 886, 1002, 1108, 1828 |
| BssT1I | CCWWGG | 7 cut(s) | 233, 333, 452, 556, 918, 1236, 1486 |
| Bst2UI | CCWGG | 1 cut(s) | 349 |
| Bst4CI | ACNGT | 5 cut(s) | 165, 320, 476, 905, 1871 |
| Bst6I | CTCTTC | 6 cut(s) | 117, 492, 570, 708, 1746, 1917 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 872, 1660, 1699 |
| BstAUI | TGTACA | 1 cut(s) | 1101 |
| BstC8I | GCNNGC | 3 cut(s) | 69, 330, 516 |
| BstDEI | CTNAG | 9 cut(s) | 95, 531, 745, 1076, 1125, 1224, 1311, 1671, 2004 |
| BstDSI | CCRYGG | 4 cut(s) | 333, 452, 1236, 1486 |
| BstF5I | GGATG | 3 cut(s) | 228, 400, 1414 |
| BstFNI | CGCG | 3 cut(s) | 900, 1118, 1974 |
| BstKTI | GATC | 6 cut(s) | 498, 744, 889, 1005, 1111, 1831 |
| BstMAI | GTCTC | 5 cut(s) | 105, 248, 572, 840, 1412 |
| BstMBI | GATC | 6 cut(s) | 495, 741, 886, 1002, 1108, 1828 |
| BstMCI | CGRYCG | 1 cut(s) | 904 |
| BstNI | CCWGG | 1 cut(s) | 349 |
| BstNSI | RCATGY | 1 cut(s) | 566 |
| BstSCI | CCNGG | 1 cut(s) | 347 |
| BstSFI | CTRYAG | 2 cut(s) | 722, 1335 |
| BstSLI | GKGCMC | 1 cut(s) | 222 |
| BstUI | CGCG | 3 cut(s) | 900, 1118, 1974 |
| BstV1I | GCAGC | 6 cut(s) | 644, 1153, 1175, 1240, 1244, 1890 |
| BstV2I | GAAGAC | 1 cut(s) | 1377 |
| BstX2I | RGATCY | 2 cut(s) | 1002, 1108 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 283 |
| BstYI | RGATCY | 2 cut(s) | 1002, 1108 |
| Bsu36I | CCTNAGG | 1 cut(s) | 531 |
| BsuI | GTATCC | 1 cut(s) | 695 |
| BsuRI | GGCC | 4 cut(s) | 67, 332, 808, 1241 |
| BtgI | CCRYGG | 4 cut(s) | 333, 452, 1236, 1486 |
| BtgZI | GCGATG | 1 cut(s) | 1635 |
| BtsCI | GGATG | 3 cut(s) | 228, 400, 1414 |
| BtsI | GCAGTG | 2 cut(s) | 731, 1551 |
| BtsIMutI | CAGTG | 4 cut(s) | 731, 1551, 1783, 1876 |
| BtuMI | TCGCGA | 2 cut(s) | 900, 1118 |
| BveI | ACCTGC | 1 cut(s) | 1553 |
| Cac8I | GCNNGC | 3 cut(s) | 69, 330, 516 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1169, 1223 |
| Cfr13I | GGNCC | 6 cut(s) | 947, 1240, 1678, 1717, 1810, 1902 |
| CseI | GACGC | 2 cut(s) | 1374, 1935 |
| Csp6I | GTAC | 4 cut(s) | 90, 1102, 1569, 1617 |
| CviQI | GTAC | 4 cut(s) | 90, 1102, 1569, 1617 |
| DdeI | CTNAG | 9 cut(s) | 95, 531, 745, 1076, 1125, 1224, 1311, 1671, 2004 |
| DpnI | GATC | 6 cut(s) | 497, 743, 888, 1004, 1110, 1830 |
| DpnII | GATC | 6 cut(s) | 495, 741, 886, 1002, 1108, 1828 |
| EaeI | YGGCCR | 1 cut(s) | 330 |
| Eam1104I | CTCTTC | 6 cut(s) | 117, 492, 570, 708, 1746, 1917 |
| EarI | CTCTTC | 6 cut(s) | 117, 492, 570, 708, 1746, 1917 |
| EciI | GGCGGA | 1 cut(s) | 1939 |
| Ecl136II | GAGCTC | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 7 cut(s) | 233, 333, 452, 556, 918, 1236, 1486 |
| Eco147I | AGGCCT | 1 cut(s) | 67 |
| Eco24I | GRGCYC | 2 cut(s) | 8, 1268 |
| Eco31I | GGTCTC | 1 cut(s) | 105 |
| Eco47I | GGWCC | 5 cut(s) | 947, 1678, 1717, 1810, 1902 |
| Eco53kI | GAGCTC | 1 cut(s) | 6 |
| Eco57I | CTGAAG | 6 cut(s) | 405, 473, 705, 1362, 1461, 1593 |
| Eco81I | CCTNAGG | 1 cut(s) | 531 |
| Eco88I | CYCGRG | 4 cut(s) | 362, 1244, 1275, 1712 |
| EcoICRI | GAGCTC | 1 cut(s) | 6 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1678, 1717, 1810 |
| EcoRII | CCWGG | 1 cut(s) | 347 |
| EcoT14I | CCWWGG | 7 cut(s) | 233, 333, 452, 556, 918, 1236, 1486 |
| EcoT38I | GRGCYC | 2 cut(s) | 8, 1268 |
| ErhI | CCWWGG | 7 cut(s) | 233, 333, 452, 556, 918, 1236, 1486 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1743, 1775 |
| FaqI | GGGAC | 3 cut(s) | 1354, 1880, 1915 |
| FauI | CCCGC | 2 cut(s) | 1570, 1967 |
| FbaI | TGATCA | 1 cut(s) | 495 |
| Fnu4HI | GCNGC | 8 cut(s) | 626, 658, 1164, 1167, 1233, 1254, 1879, 1953 |
| FokI | GGATG | 3 cut(s) | 215, 407, 1421 |
| FriOI | GRGCYC | 2 cut(s) | 8, 1268 |
| Fsp4HI | GCNGC | 8 cut(s) | 626, 658, 1164, 1167, 1233, 1254, 1879, 1953 |
| FspBI | CTAG | 4 cut(s) | 693, 1044, 1203, 1664 |
| GluI | GCNGC | 8 cut(s) | 626, 658, 1164, 1167, 1233, 1254, 1879, 1953 |
| GsuI | CTGGAG | 3 cut(s) | 82, 230, 1615 |
| HaeIII | GGCC | 4 cut(s) | 67, 332, 808, 1241 |
| HgaI | GACGC | 2 cut(s) | 1374, 1935 |
| HindIII | AAGCTT | 2 cut(s) | 755, 2001 |
| HphI | GGTGA | 3 cut(s) | 562, 722, 1547 |
| Hpy166II | GTNNAC | 5 cut(s) | 92, 323, 553, 993, 1940 |
| Hpy188I | TCNGA | 9 cut(s) | 149, 291, 385, 500, 988, 1151, 1363, 1828, 1833 |
| Hpy8I | GTNNAC | 5 cut(s) | 92, 323, 553, 993, 1940 |
| Hpy99I | CGWCG | 1 cut(s) | 320 |
| HpyAV | CCTTC | 7 cut(s) | 25, 82, 154, 378, 843, 993, 1386 |
| HpyCH4III | ACNGT | 5 cut(s) | 165, 320, 476, 905, 1871 |
| HpyF3I | CTNAG | 9 cut(s) | 95, 531, 745, 1076, 1125, 1224, 1311, 1671, 2004 |
| Ksp22I | TGATCA | 1 cut(s) | 495 |
| Kzo9I | GATC | 6 cut(s) | 495, 741, 886, 1002, 1108, 1828 |
| LmnI | GCTCC | 2 cut(s) | 11, 1833 |
| Lsp1109I | GCAGC | 6 cut(s) | 644, 1153, 1175, 1240, 1244, 1890 |
| LweI | GCATC | 2 cut(s) | 1520, 1657 |
| MaeI | CTAG | 4 cut(s) | 693, 1044, 1203, 1664 |
| MalI | GATC | 6 cut(s) | 497, 743, 888, 1004, 1110, 1830 |
| MboI | GATC | 6 cut(s) | 495, 741, 886, 1002, 1108, 1828 |
| MflI | RGATCY | 2 cut(s) | 1002, 1108 |
| MhlI | GDGCHC | 7 cut(s) | 8, 222, 347, 829, 1156, 1268, 1775 |
| MlsI | TGGCCA | 1 cut(s) | 332 |
| MluNI | TGGCCA | 1 cut(s) | 332 |
| MlyI | GAGTC | 2 cut(s) | 998, 1622 |
| Mox20I | TGGCCA | 1 cut(s) | 332 |
| MroXI | GAANNNNTTC | 1 cut(s) | 486 |
| MscI | TGGCCA | 1 cut(s) | 332 |
| MseI | TTAA | 7 cut(s) | 225, 252, 410, 588, 677, 1056, 1890 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1491 |
| Msp20I | TGGCCA | 1 cut(s) | 332 |
| MspA1I | CMGCKG | 3 cut(s) | 328, 493, 1166 |
| MspR9I | CCNGG | 1 cut(s) | 349 |
| Mva1269I | GAATGC | 2 cut(s) | 304, 1880 |
| MvaI | CCWGG | 1 cut(s) | 349 |
| MvnI | CGCG | 3 cut(s) | 900, 1118, 1974 |
| NcoI | CCATGG | 4 cut(s) | 333, 452, 1236, 1486 |
| NdeII | GATC | 6 cut(s) | 495, 741, 886, 1002, 1108, 1828 |
| NlaIV | GGNNCC | 6 cut(s) | 1004, 1110, 1468, 1545, 1719, 1903 |
| NruI | TCGCGA | 2 cut(s) | 900, 1118 |
| NspI | RCATGY | 1 cut(s) | 566 |
| PaeR7I | CTCGAG | 3 cut(s) | 1244, 1275, 1712 |
| PceI | AGGCCT | 1 cut(s) | 67 |
| PctI | GAATGC | 2 cut(s) | 304, 1880 |
| PdmI | GAANNNNTTC | 1 cut(s) | 486 |
| PfeI | GAWTC | 8 cut(s) | 272, 338, 380, 526, 609, 731, 1331, 1969 |
| PkrI | GCNGC | 8 cut(s) | 627, 659, 1165, 1168, 1234, 1255, 1880, 1954 |
| PleI | GAGTC | 2 cut(s) | 997, 1622 |
| PpsI | GAGTC | 2 cut(s) | 997, 1622 |
| PpuMI | RGGWCCY | 3 cut(s) | 1678, 1717, 1810 |
| Psp124BI | GAGCTC | 1 cut(s) | 8 |
| Psp5II | RGGWCCY | 3 cut(s) | 1678, 1717, 1810 |
| Psp6I | CCWGG | 1 cut(s) | 347 |
| PspGI | CCWGG | 1 cut(s) | 347 |
| PspN4I | GGNNCC | 6 cut(s) | 1004, 1110, 1468, 1545, 1719, 1903 |
| PspPI | GGNCC | 6 cut(s) | 947, 1240, 1678, 1717, 1810, 1902 |
| PspPPI | RGGWCCY | 3 cut(s) | 1678, 1717, 1810 |
| PspXI | VCTCGAGB | 2 cut(s) | 1244, 1275 |
| PstI | CTGCAG | 1 cut(s) | 726 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1169, 1223 |
| PsuI | RGATCY | 2 cut(s) | 1002, 1108 |
| PvuII | CAGCTG | 3 cut(s) | 328, 493, 1166 |
| RruI | TCGCGA | 2 cut(s) | 900, 1118 |
| RsaI | GTAC | 4 cut(s) | 91, 1103, 1570, 1618 |
| RsaNI | GTAC | 4 cut(s) | 90, 1102, 1569, 1617 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1491 |
| SacI | GAGCTC | 1 cut(s) | 8 |
| SaqAI | TTAA | 7 cut(s) | 225, 252, 410, 588, 677, 1056, 1890 |
| SatI | GCNGC | 8 cut(s) | 626, 658, 1164, 1167, 1233, 1254, 1879, 1953 |
| Sau3AI | GATC | 6 cut(s) | 495, 741, 886, 1002, 1108, 1828 |
| Sau96I | GGNCC | 6 cut(s) | 947, 1240, 1678, 1717, 1810, 1902 |
| SchI | GAGTC | 2 cut(s) | 998, 1622 |
| ScrFI | CCNGG | 1 cut(s) | 349 |
| SduI | GDGCHC | 7 cut(s) | 8, 222, 347, 829, 1156, 1268, 1775 |
| SfaNI | GCATC | 2 cut(s) | 1520, 1657 |
| SfcI | CTRYAG | 2 cut(s) | 722, 1335 |
| Sfr274I | CTCGAG | 3 cut(s) | 1244, 1275, 1712 |
| SinI | GGWCC | 5 cut(s) | 947, 1678, 1717, 1810, 1902 |
| SlaI | CTCGAG | 3 cut(s) | 1244, 1275, 1712 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1491 |
| SmlI | CTYRAG | 4 cut(s) | 839, 1244, 1275, 1712 |
| SmoI | CTYRAG | 4 cut(s) | 839, 1244, 1275, 1712 |
| SseBI | AGGCCT | 1 cut(s) | 67 |
| SsiI | CCGC | 6 cut(s) | 625, 1556, 1577, 1950, 1953, 1974 |
| SspI | AATATT | 1 cut(s) | 929 |
| SspMI | CTAG | 4 cut(s) | 693, 1044, 1203, 1664 |
| SstI | GAGCTC | 1 cut(s) | 8 |
| StuI | AGGCCT | 1 cut(s) | 67 |
| StyD4I | CCNGG | 1 cut(s) | 347 |
| StyI | CCWWGG | 7 cut(s) | 233, 333, 452, 556, 918, 1236, 1486 |
| TaaI | ACNGT | 5 cut(s) | 165, 320, 476, 905, 1871 |
| TaqI | TCGA | 7 cut(s) | 315, 341, 783, 1245, 1276, 1613, 1713 |
| TatI | WGTACW | 2 cut(s) | 1101, 1616 |
| TauI | GCSGC | 2 cut(s) | 628, 1955 |
| TfiI | GAWTC | 8 cut(s) | 272, 338, 380, 526, 609, 731, 1331, 1969 |
| Tru1I | TTAA | 7 cut(s) | 225, 252, 410, 588, 677, 1056, 1890 |
| Tru9I | TTAA | 7 cut(s) | 225, 252, 410, 588, 677, 1056, 1890 |
| TscAI | CASTG | 4 cut(s) | 731, 1558, 1783, 1876 |
| TseI | GCWGC | 6 cut(s) | 657, 1163, 1166, 1232, 1253, 1878 |
| TspGWI | ACGGA | 1 cut(s) | 1785 |
| TspRI | CASTG | 4 cut(s) | 731, 1558, 1783, 1876 |
| VpaK11BI | GGWCC | 5 cut(s) | 947, 1678, 1717, 1810, 1902 |
| XapI | RAATTY | 3 cut(s) | 78, 179, 280 |
| XbaI | TCTAGA | 1 cut(s) | 692 |
| XceI | RCATGY | 1 cut(s) | 566 |
| XhoI | CTCGAG | 3 cut(s) | 1244, 1275, 1712 |
| XmnI | GAANNNNTTC | 1 cut(s) | 486 |
| XspI | CTAG | 4 cut(s) | 693, 1044, 1203, 1664 |