MD09G1172000.v1.1

NUMOD3 motif (2 copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006219
Physical Location & Seq
Reverse (-)
14536063 .. 14539241
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1172000.v1.1.491

Sequence Viewer

Length: 2034 bp
ATGATCCTCTTGCTGATAATTGTCGTTGAAGCTTTGAGGATATCTCATATATGCCTGTACTTTTCAGCAGAGATTGCTGCTGCACAGCCTGCCTTCCAAAATCATCTCGGTACACTCAGGGCTCAAACCCCTGTTTATGGTAAAGTAATTTCAAGTCCATTCGCCTTTGGAAATGACAAGAAACTGTCATCTGCTTGGAAACTCCCTCATATATCTATAAAATTGAGCTTCAACTTGGGGCGCATTAACGTCCCAAAGGGTAGTCTCCGGATCAAGGCAGTTGCTACTCTTGAATCCAAAAGTTTGGTTCAGAATGAGAATGCACACGCGGGTTACAACGGTTCACAGTTGGGCAGGGAGTCCAGTCCCCTGGCAGGTCAGCTCGAGCCTTCAAGTGATGATTCCGAAGAATTGGATGATAGGGAGAAGTTAAGGCGATTGAGGATTTCCAATGCTATTAAAGGAAGCACGCCATGGAACAAAGGCCGAAAGCACAGTCCTGAAACCCGTCAGCTGATCAAAGAGAGAACAAGGCTTGCAATGCAGAATCCTAAGGTCAAAATGAAGTTGGTGAAACTTGGACATGCTCAAAGTGAAGAGACAAGAGTTAAAATCGGGCTTGGAGTGCGAATAGGGTGGCAAAAACGGCGTGAGAAGCTATCATTGCAGGAACATTGCTGCTATGACTGGCAGAACTTAATTGCTGAAGCCTCTAGACAAGGATACGACGGTGAAGAGGAACTGCAATGGGATATCTACAAGATCTTAGATGAAAAGCTTACAGAGGAGTATATAGAGAGGGTCGAGCAAAGGAAAATTATGCGTAGGCCAAAAGGAAGCAAGAGAGCACCCAAGTCTCTTGAGCAAAGAAGGAGGATTTCACAAGCAATCTCTGCAAAATGGAACGATCCTAATTATCGCGACCGTGTTTGCTCTGCATTGGCAAAATATTATGATGCATCGTATGGACCCGAAAGAAAGCCAACGAAGAAGCCAAGTGGTAGTACAGAGTCCACGAGAAGGGTACCTGCAAAGAAAATGGTCAGTGAGAAAAACAATTTCTCTAGTGGCGAGCTTAAAATCCAAAAGCAACGACTGAGGTTGAGAAGTAAAGCACCCATGTACAAGGATCCTCTCGCGAGTTCTAAGATGGAGATGATAAAGAATATCAGAGCACAAAGAGCAGCTGCTGAAACCGAAAAAACTGAAGCCGTAGAAAGAGTTAGGTTATTGATCGCAGAAGCTGAGAAGGCAGCTATGGCCCTTGAGGTTGCTGCAACAAAGAGCGCTGTTGCTCGAGCTTCCTTCATTGAAACCCGACAGCTTATAGCTGAGGCAATTCAATTGATTGAATCTGTTGAGACGGCACAGATTTCTTCCTCCGAGAATGAAGATCCTTCAGTTACATCAGATGAAGCGATTACTCAGGACGAAAAGGAAGCATGTACTGGGGTTGGGGAACTGACTGAAGCAGATAGTGGAAGGGTAAATGGCACCCGAACTTCGTCCTCCCATGAGAATGAAAACCCTATATTTGCATCATATGAAGTGATTACTGAGGGTGGGGAGGAACCATGCACCGCGGTTGCAGGTCAGACTGAAGCGGGTAATGTAAAGACAAATGGCACGAAAACCTTATCGAGTACAAACGAGGACTCCACCTTTGGCAACTTCACATCGGAGTATATGGTAGATGCCGAAGAGGACCTTTCCCCATTGCAGGATATGCTTAATGTTCTCGAGGACCCTGCCCCGTTGGAGGATATGCTCAATAGTGAAGAGGACCTTCCCCGACTGAGTACCAGCGGCTATGGTTTGCCTCCGTTTGGTTTTGAGGAGCTAATAAAGCAATCGGATGTGAGAAATGAACCCAACCAGTTAGAACCAAATGGGGACGGTGAGTGCAGCAAGAAGCTTCAACTCAATGGGACGAAAGTTCAATCCAAAGAAGAGGAAACGCCTTGTAAACCAGTGACCGGCGCTACTAAAAAGTGGATTCGCGGGAGGCTTGTTGAAGTAGGAGAAGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUMOD3

Protein Analysis

678

Amino Acids

75.45

Weight (kDa)

7.1

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUMOD3 PF07460 146 - 173 4.8e-08 NUMOD3 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 365, 1036, 1580
Acc65I GGTACC 1 cut(s) 1024
AccB1I GGYRCC 2 cut(s) 1024, 1493
AccII CGCG 5 cut(s) 329, 921, 1139, 1583, 2001
AccIII TCCGGA 1 cut(s) 267
AciI CCGC 6 cut(s) 329, 1581, 1583, 1604, 1806, 2001
AclWI GGATC 5 cut(s) 278, 902, 1124, 1137, 1388
AcuI CTGAAG 5 cut(s) 726, 1227, 1383, 1488, 1620
AfaI GTAC 8 cut(s) 59, 112, 1006, 1026, 1124, 1447, 1645, 1801
AfeI AGCGCT 1 cut(s) 1288
AfiI CCNNNNNNNGG 8 cut(s) 137, 274, 374, 1020, 1720, 1759, 1826, 1976
AjnI CCWGG 1 cut(s) 369
Alw21I GWGCWC 2 cut(s) 850, 1177
Alw26I GTCTC 4 cut(s) 269, 593, 861, 1355
AlwI GGATC 5 cut(s) 278, 902, 1124, 1137, 1388
AlwNI CAGNNNCTG 2 cut(s) 1190, 1244
Ama87I CYCGRG 3 cut(s) 383, 1296, 1739
Aor13HI TCCGGA 1 cut(s) 267
Aor51HI AGCGCT 1 cut(s) 1288
AoxI GGCC 3 cut(s) 484, 827, 1260
ApeKI GCWGC 8 cut(s) 77, 80, 678, 1184, 1187, 1253, 1274, 1905
ArsI GACNNNNNNTTYG 4 cut(s) 481, 513, 1646, 1678
Asp718I GGTACC 1 cut(s) 1024
AspLEI GCGC 3 cut(s) 243, 1289, 1982
AspS9I GGNCC 5 cut(s) 968, 1261, 1705, 1744, 1783
AsuHPI GGTGA 3 cut(s) 583, 743, 1910
AvaI CYCGRG 3 cut(s) 383, 1296, 1739
AvaII GGWCC 4 cut(s) 968, 1705, 1744, 1783
AxyI CCTNAGG 1 cut(s) 552
BaeI ACNNNNGTAYC 2 cut(s) 715, 748
BamHI GGATCC 1 cut(s) 1129
BanI GGYRCC 2 cut(s) 1024, 1493
BanII GRGCYC 1 cut(s) 124
BauI CACGAG 1 cut(s) 1015
Bbv12I GWGCWC 2 cut(s) 850, 1177
BbvCI CCTCAGC 1 cut(s) 1332
BbvI GCAGC 8 cut(s) 64, 67, 665, 1174, 1196, 1261, 1265, 1917
BccI CCATC 1 cut(s) 1144
BceAI ACGGC 3 cut(s) 662, 1196, 1380
BcgI CGANNNNNNTGC 2 cut(s) 1730, 1764
BciT130I CCWGG 1 cut(s) 371
BciVI GTATCC 1 cut(s) 716
BclI TGATCA 1 cut(s) 516
BcoDI GTCTC 4 cut(s) 269, 593, 861, 1355
BfaI CTAG 2 cut(s) 714, 1065
BfoI RGCGCY 2 cut(s) 1290, 1983
BfuAI ACCTGC 3 cut(s) 365, 1036, 1580
BfuI GTATCC 1 cut(s) 716
BglII AGATCT 1 cut(s) 762
BisI GCNGC 9 cut(s) 78, 81, 679, 1185, 1188, 1254, 1275, 1807, 1906
BlsI GCNGC 9 cut(s) 79, 82, 680, 1186, 1189, 1255, 1276, 1808, 1907
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 4 cut(s) 968, 1705, 1744, 1783
BmeT110I CYCGRG 3 cut(s) 383, 1296, 1739
BmgT120I GGNCC 5 cut(s) 968, 1261, 1705, 1744, 1783
BmiI GGNNCC 6 cut(s) 970, 1026, 1131, 1495, 1572, 1746
BmrFI CCNGG 1 cut(s) 371
BmrI ACTGGG 1 cut(s) 1458
BmsI GCATC 4 cut(s) 946, 968, 1547, 1684
BmuI ACTGGG 1 cut(s) 1458
BplI GAGNNNNNCTC 2 cut(s) 28, 60
Bpu10I CCTNAGC 1 cut(s) 1332
BpuEI CTTGAG 2 cut(s) 881, 1286
BsaJI CCNNGG 3 cut(s) 369, 473, 1581
BsaWI WCCGGW 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 1640, 1670
Bsc4I CCNNNNNNNGG 8 cut(s) 137, 274, 374, 1020, 1720, 1759, 1826, 1976
Bse118I RCCGGY 1 cut(s) 1976
Bse1I ACTGG 5 cut(s) 363, 692, 1453, 1876, 1970
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 5 cut(s) 546, 662, 673, 752, 1715
BseAI TCCGGA 1 cut(s) 267
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 3 cut(s) 369, 473, 1581
BseGI GGATG 2 cut(s) 421, 1861
BseLI CCNNNNNNNGG 8 cut(s) 137, 274, 374, 1020, 1720, 1759, 1826, 1976
BseMI GCAATG 5 cut(s) 546, 662, 673, 752, 1715
BseMII CTCAG 7 cut(s) 130, 1088, 1236, 1323, 1439, 1548, 1787
BseNI ACTGG 5 cut(s) 363, 692, 1453, 1876, 1970
BseRI GAGGAG 2 cut(s) 800, 1850
BseXI GCAGC 8 cut(s) 64, 67, 665, 1174, 1196, 1261, 1265, 1917
BsgI GTGCAG 2 cut(s) 66, 1924
Bsh1236I CGCG 5 cut(s) 329, 921, 1139, 1583, 2001
Bsh1285I CGRYCG 1 cut(s) 925
BshFI GGCC 3 cut(s) 486, 829, 1262
BshNI GGYRCC 2 cut(s) 1024, 1493
BsiEI CGRYCG 1 cut(s) 925
BsiHKAI GWGCWC 2 cut(s) 850, 1177
BsiHKCI CYCGRG 3 cut(s) 383, 1296, 1739
BsiSI CCGG 2 cut(s) 268, 1977
BslFI GGGAC 4 cut(s) 236, 351, 1907, 1942
BslI CCNNNNNNNGG 8 cut(s) 137, 274, 374, 1020, 1720, 1759, 1826, 1976
BsmAI GTCTC 4 cut(s) 269, 593, 861, 1355
BsmBI CGTCTC 1 cut(s) 1355
BsmFI GGGAC 4 cut(s) 236, 351, 1907, 1942
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 3 cut(s) 486, 829, 1262
BsoBI CYCGRG 3 cut(s) 383, 1296, 1739
Bsp1286I GDGCHC 3 cut(s) 124, 850, 1177
Bsp13I TCCGGA 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 1122
Bsp143I GATC 8 cut(s) 3, 270, 516, 762, 907, 1129, 1233, 1393
Bsp19I CCATGG 1 cut(s) 473
Bsp68I TCGCGA 2 cut(s) 921, 1139
BspACI CCGC 6 cut(s) 329, 1581, 1583, 1604, 1806, 2001
BspANI GGCC 3 cut(s) 486, 829, 1262
BspCNI CTCAG 7 cut(s) 129, 1089, 1237, 1324, 1438, 1549, 1788
BspEI TCCGGA 1 cut(s) 267
BspFNI CGCG 5 cut(s) 329, 921, 1139, 1583, 2001
BspLI GGNNCC 6 cut(s) 970, 1026, 1131, 1495, 1572, 1746
BspMI ACCTGC 3 cut(s) 365, 1036, 1580
BspPI GGATC 5 cut(s) 278, 902, 1124, 1137, 1388
BspT107I GGYRCC 2 cut(s) 1024, 1493
BsrDI GCAATG 5 cut(s) 546, 662, 673, 752, 1715
BsrFI RCCGGY 1 cut(s) 1976
BsrGI TGTACA 1 cut(s) 1122
BsrI ACTGG 5 cut(s) 363, 692, 1453, 1876, 1970
BssAI RCCGGY 1 cut(s) 1976
BssECI CCNNGG 3 cut(s) 369, 473, 1581
BssMI GATC 8 cut(s) 3, 270, 516, 762, 907, 1129, 1233, 1393
BssSI CACGAG 1 cut(s) 1015
BssT1I CCWWGG 1 cut(s) 473
Bst2BI CACGAG 1 cut(s) 1015
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 7 cut(s) 186, 341, 348, 497, 731, 926, 1898
Bst6I CTCTTC 5 cut(s) 591, 729, 1695, 1773, 1944
BstAPI GCANNNNNTGC 4 cut(s) 74, 89, 893, 1726
BstAUI TGTACA 1 cut(s) 1122
BstC8I GCNNGC 4 cut(s) 90, 470, 537, 1073
BstDSI CCRYGG 2 cut(s) 473, 1581
BstF5I GGATG 2 cut(s) 421, 1861
BstFNI CGCG 5 cut(s) 329, 921, 1139, 1583, 2001
BstH2I RGCGCY 2 cut(s) 1290, 1983
BstHHI GCGC 3 cut(s) 243, 1289, 1982
BstKTI GATC 8 cut(s) 6, 273, 519, 765, 910, 1132, 1236, 1396
BstMAI GTCTC 4 cut(s) 269, 593, 861, 1355
BstMBI GATC 8 cut(s) 3, 270, 516, 762, 907, 1129, 1233, 1393
BstMCI CGRYCG 1 cut(s) 925
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 2 cut(s) 587, 1446
BstSCI CCNGG 1 cut(s) 369
BstUI CGCG 5 cut(s) 329, 921, 1139, 1583, 2001
BstV1I GCAGC 8 cut(s) 64, 67, 665, 1174, 1196, 1261, 1265, 1917
BstX2I RGATCY 3 cut(s) 762, 1129, 1393
BstXI CCANNNNNNTGG 2 cut(s) 304, 370
BstYI RGATCY 3 cut(s) 762, 1129, 1393
Bsu36I CCTNAGG 1 cut(s) 552
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 3 cut(s) 486, 829, 1262
BtgI CCRYGG 2 cut(s) 473, 1581
BtsCI GGATG 2 cut(s) 421, 1861
BtsIMutI CAGTG 2 cut(s) 1051, 1977
BtuMI TCGCGA 2 cut(s) 921, 1139
BveI ACCTGC 3 cut(s) 365, 1036, 1580
Cac8I GCNNGC 4 cut(s) 90, 470, 537, 1073
CaiI CAGNNNCTG 2 cut(s) 1190, 1244
CfoI GCGC 3 cut(s) 243, 1289, 1982
Cfr10I RCCGGY 1 cut(s) 1976
Cfr13I GGNCC 5 cut(s) 968, 1261, 1705, 1744, 1783
Cfr42I CCGCGG 1 cut(s) 1584
Csp6I GTAC 8 cut(s) 58, 111, 1005, 1025, 1123, 1446, 1644, 1800
CviAII CATG 6 cut(s) 474, 584, 1120, 1443, 1514, 1575
CviQI GTAC 8 cut(s) 58, 111, 1005, 1025, 1123, 1446, 1644, 1800
DpnI GATC 8 cut(s) 5, 272, 518, 764, 909, 1131, 1235, 1395
DpnII GATC 8 cut(s) 3, 270, 516, 762, 907, 1129, 1233, 1393
Eam1104I CTCTTC 5 cut(s) 591, 729, 1695, 1773, 1944
EarI CTCTTC 5 cut(s) 591, 729, 1695, 1773, 1944
Eco130I CCWWGG 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 124
Eco32I GATATC 2 cut(s) 42, 754
Eco47I GGWCC 4 cut(s) 968, 1705, 1744, 1783
Eco47III AGCGCT 1 cut(s) 1288
Eco57I CTGAAG 5 cut(s) 726, 1227, 1383, 1488, 1620
Eco81I CCTNAGG 1 cut(s) 552
Eco88I CYCGRG 3 cut(s) 383, 1296, 1739
EcoO109I RGGNCCY 3 cut(s) 1705, 1744, 1783
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 2 cut(s) 42, 754
EcoT14I CCWWGG 1 cut(s) 473
EcoT22I ATGCAT 1 cut(s) 961
EcoT38I GRGCYC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 1355
FaeI CATG 6 cut(s) 477, 587, 1123, 1446, 1517, 1578
FalI AAGNNNNNCTT 4 cut(s) 1692, 1724, 1770, 1802
FaqI GGGAC 4 cut(s) 236, 351, 1907, 1942
FatI CATG 6 cut(s) 473, 583, 1119, 1442, 1513, 1574
FauI CCCGC 3 cut(s) 322, 1597, 1994
FauNDI CATATG 1 cut(s) 1543
FbaI TGATCA 1 cut(s) 516
Fnu4HI GCNGC 9 cut(s) 78, 81, 679, 1185, 1188, 1254, 1275, 1807, 1906
FokI GGATG 2 cut(s) 428, 1868
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 9 cut(s) 78, 81, 679, 1185, 1188, 1254, 1275, 1807, 1906
FspBI CTAG 2 cut(s) 714, 1065
GlaI GCGC 3 cut(s) 242, 1288, 1981
GluI GCNGC 9 cut(s) 78, 81, 679, 1185, 1188, 1254, 1275, 1807, 1906
HaeII RGCGCY 2 cut(s) 1290, 1983
HaeIII GGCC 3 cut(s) 486, 829, 1262
HapII CCGG 2 cut(s) 268, 1977
HhaI GCGC 3 cut(s) 243, 1289, 1982
Hin1II CATG 6 cut(s) 477, 587, 1123, 1446, 1517, 1578
Hin6I GCGC 3 cut(s) 241, 1287, 1980
HinP1I GCGC 3 cut(s) 241, 1287, 1980
HindIII AAGCTT 4 cut(s) 30, 776, 1913, 2028
HinfI GANTC 8 cut(s) 293, 359, 401, 547, 1010, 1352, 1655, 1996
HpaII CCGG 2 cut(s) 268, 1977
HphI GGTGA 3 cut(s) 583, 743, 1910
Hpy166II GTNNAC 4 cut(s) 113, 344, 1014, 1967
Hpy188I TCNGA 8 cut(s) 312, 406, 1172, 1384, 1411, 1596, 1681, 1855
Hpy188III TCNNGA 9 cut(s) 268, 290, 500, 714, 860, 920, 1138, 1427, 1739
Hpy8I GTNNAC 4 cut(s) 113, 344, 1014, 1967
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 9 cut(s) 103, 399, 864, 1014, 1243, 1315, 1407, 1476, 1796
HpyCH4III ACNGT 7 cut(s) 186, 341, 348, 497, 731, 926, 1898
HpyCH4IV ACGT 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 6 cut(s) 477, 587, 1123, 1446, 1517, 1578
HspAI GCGC 3 cut(s) 241, 1287, 1980
Kpn2I TCCGGA 1 cut(s) 267
KpnI GGTACC 1 cut(s) 1028
Ksp22I TGATCA 1 cut(s) 516
KspI CCGCGG 1 cut(s) 1584
Kzo9I GATC 8 cut(s) 3, 270, 516, 762, 907, 1129, 1233, 1393
LmnI GCTCC 1 cut(s) 1837
Lsp1109I GCAGC 8 cut(s) 64, 67, 665, 1174, 1196, 1261, 1265, 1917
LweI GCATC 4 cut(s) 946, 968, 1547, 1684
MaeI CTAG 2 cut(s) 714, 1065
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 3 cut(s) 332, 1402, 1972
MalI GATC 8 cut(s) 5, 272, 518, 764, 909, 1131, 1235, 1395
MboI GATC 8 cut(s) 3, 270, 516, 762, 907, 1129, 1233, 1393
MboII GAAGA 9 cut(s) 419, 608, 746, 1000, 1368, 1403, 1712, 1790, 1961
MfeI CAATTG 1 cut(s) 1343
MflI RGATCY 3 cut(s) 762, 1129, 1393
MhlI GDGCHC 3 cut(s) 124, 850, 1177
MlyI GAGTC 3 cut(s) 368, 1019, 1649
MmeI TCCRAC 1 cut(s) 1737
Mph1103I ATGCAT 1 cut(s) 961
MroI TCCGGA 1 cut(s) 267
MseI TTAA 8 cut(s) 246, 431, 459, 609, 698, 1077, 1731, 2032
MslI CAYNNNNRTG 1 cut(s) 1518
MspA1I CMGCKG 4 cut(s) 514, 1187, 1583, 1806
MspI CCGG 2 cut(s) 268, 1977
MspR9I CCNGG 1 cut(s) 371
MunI CAATTG 1 cut(s) 1343
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 5 cut(s) 329, 921, 1139, 1583, 2001
NcoI CCATGG 1 cut(s) 473
NdeI CATATG 1 cut(s) 1543
NdeII GATC 8 cut(s) 3, 270, 516, 762, 907, 1129, 1233, 1393
NlaIII CATG 6 cut(s) 477, 587, 1123, 1446, 1517, 1578
NlaIV GGNNCC 6 cut(s) 970, 1026, 1131, 1495, 1572, 1746
NmuCI GTSAC 1 cut(s) 1972
NruI TCGCGA 2 cut(s) 921, 1139
NsiI ATGCAT 1 cut(s) 961
NspI RCATGY 2 cut(s) 587, 1446
PaeR7I CTCGAG 3 cut(s) 383, 1296, 1739
PctI GAATGC 1 cut(s) 325
PfeI GAWTC 5 cut(s) 293, 401, 547, 1352, 1996
PkrI GCNGC 9 cut(s) 79, 82, 680, 1186, 1189, 1255, 1276, 1808, 1907
PleI GAGTC 3 cut(s) 367, 1018, 1649
PpsI GAGTC 3 cut(s) 367, 1018, 1649
PpuMI RGGWCCY 3 cut(s) 1705, 1744, 1783
Psp5II RGGWCCY 3 cut(s) 1705, 1744, 1783
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 6 cut(s) 970, 1026, 1131, 1495, 1572, 1746
PspPI GGNCC 5 cut(s) 968, 1261, 1705, 1744, 1783
PspPPI RGGWCCY 3 cut(s) 1705, 1744, 1783
PspXI VCTCGAGB 2 cut(s) 383, 1296
PstNI CAGNNNCTG 2 cut(s) 1190, 1244
PsuI RGATCY 3 cut(s) 762, 1129, 1393
PvuII CAGCTG 2 cut(s) 514, 1187
RruI TCGCGA 2 cut(s) 921, 1139
RsaI GTAC 8 cut(s) 59, 112, 1006, 1026, 1124, 1447, 1645, 1801
RsaNI GTAC 8 cut(s) 58, 111, 1005, 1025, 1123, 1446, 1644, 1800
RseI CAYNNNNRTG 1 cut(s) 1518
SacII CCGCGG 1 cut(s) 1584
SaqAI TTAA 8 cut(s) 246, 431, 459, 609, 698, 1077, 1731, 2032
SatI GCNGC 9 cut(s) 78, 81, 679, 1185, 1188, 1254, 1275, 1807, 1906
Sau3AI GATC 8 cut(s) 3, 270, 516, 762, 907, 1129, 1233, 1393
Sau96I GGNCC 5 cut(s) 968, 1261, 1705, 1744, 1783
SchI GAGTC 3 cut(s) 368, 1019, 1649
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 3 cut(s) 124, 850, 1177
SfaNI GCATC 4 cut(s) 946, 968, 1547, 1684
Sfr274I CTCGAG 3 cut(s) 383, 1296, 1739
Sfr303I CCGCGG 1 cut(s) 1584
SgrBI CCGCGG 1 cut(s) 1584
SinI GGWCC 4 cut(s) 968, 1705, 1744, 1783
SlaI CTCGAG 3 cut(s) 383, 1296, 1739
SmiMI CAYNNNNRTG 1 cut(s) 1518
SmlI CTYRAG 5 cut(s) 383, 860, 1265, 1296, 1739
SmoI CTYRAG 5 cut(s) 383, 860, 1265, 1296, 1739
SsiI CCGC 6 cut(s) 329, 1581, 1583, 1604, 1806, 2001
SspI AATATT 1 cut(s) 950
SspMI CTAG 2 cut(s) 714, 1065
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 7 cut(s) 186, 341, 348, 497, 731, 926, 1898
TaiI ACGT 1 cut(s) 252
TaqI TCGA 5 cut(s) 384, 804, 1297, 1640, 1740
TatI WGTACW 5 cut(s) 57, 1004, 1122, 1445, 1643
TauI GCSGC 1 cut(s) 1809
TfiI GAWTC 5 cut(s) 293, 401, 547, 1352, 1996
Tru1I TTAA 8 cut(s) 246, 431, 459, 609, 698, 1077, 1731, 2032
Tru9I TTAA 8 cut(s) 246, 431, 459, 609, 698, 1077, 1731, 2032
TscAI CASTG 2 cut(s) 1051, 1977
TseFI GTSAC 1 cut(s) 1972
TseI GCWGC 8 cut(s) 77, 80, 678, 1184, 1187, 1253, 1274, 1905
Tsp45I GTSAC 1 cut(s) 1972
TspDTI ATGAA 8 cut(s) 578, 786, 1297, 1404, 1428, 1536, 1560, 1881
TspGWI ACGGA 1 cut(s) 1812
TspRI CASTG 2 cut(s) 1051, 1977
VpaK11BI GGWCC 4 cut(s) 968, 1705, 1744, 1783
XbaI TCTAGA 1 cut(s) 713
XceI RCATGY 2 cut(s) 587, 1446
XhoI CTCGAG 3 cut(s) 383, 1296, 1739
XspI CTAG 2 cut(s) 714, 1065
Zsp2I ATGCAT 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.