NUMOD3 motif (2 copies)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G53800 AT1G53800 AT1G53800 AT1G53800 |
| fragaria_vesca | FvH4_6g35990 FvH4_6g35990 FvH4_6g35990 FvH4_6g35990 |
| malus_domestica | MD09G1172000.v1.1 MD17G1154900.v1.1 |
| prunus_persica | Prupe.3G030400_v2.0.a1 Prupe.3G030400_v2.0.a1 Prupe.3G030400_v2.0.a1 Prupe.3G030400_v2.0.a1 |
| pyrus_communis | pycom09g08940 pycom17g14770 |
| rosa_chinensis | RchiOBHm_Chr2g0148111 |
| rosa_laevigata | RLG00000020314 |
| rosa_multiflora | Rmu_sc0001516.1_g000037 Rmu_sc0012028.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00099140 |
| rosa_rugosa | Rorug02G0403500 |
| rosa_samantha | Rh2AG461400 Rh2BG475200 Rh2CG448500 Rh2DG483800 |
| rosa_wichuraiana | Rw2G037670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 194 |
| Acc65I | GGTACC | 1 cut(s) | 854 |
| AccB1I | GGYRCC | 3 cut(s) | 854, 983, 1115 |
| AccII | CGCG | 1 cut(s) | 685 |
| AccIII | TCCGGA | 1 cut(s) | 280 |
| AciI | CCGC | 2 cut(s) | 19, 698 |
| AclWI | GGATC | 3 cut(s) | 272, 491, 504 |
| AcsI | RAATTY | 1 cut(s) | 429 |
| AcuI | CTGAAG | 8 cut(s) | 96, 482, 594, 627, 750, 876, 975, 1110 |
| AfaI | GTAC | 3 cut(s) | 287, 856, 1419 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 295, 390 |
| Alw21I | GWGCWC | 2 cut(s) | 220, 544 |
| AlwI | GGATC | 3 cut(s) | 272, 491, 504 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 460, 557, 1076 |
| Ama87I | CYCGRG | 1 cut(s) | 663 |
| Aor13HI | TCCGGA | 1 cut(s) | 280 |
| AoxI | GGCC | 1 cut(s) | 197 |
| ApeKI | GCWGC | 2 cut(s) | 551, 620 |
| ApoI | RAATTY | 1 cut(s) | 429 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1007, 1039, 1139, 1171 |
| Asp718I | GGTACC | 1 cut(s) | 854 |
| AspLEI | GCGC | 1 cut(s) | 195 |
| AspS9I | GGNCC | 4 cut(s) | 482, 1082, 1147, 1332 |
| AsuC2I | CCSGG | 1 cut(s) | 296 |
| AsuHPI | GGTGA | 4 cut(s) | 113, 357, 988, 1159 |
| AvaI | CYCGRG | 1 cut(s) | 663 |
| AvaII | GGWCC | 4 cut(s) | 482, 1082, 1147, 1332 |
| BamHI | GGATCC | 1 cut(s) | 496 |
| BanI | GGYRCC | 3 cut(s) | 854, 983, 1115 |
| BanII | GRGCYC | 2 cut(s) | 398, 656 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 382, 414 |
| BbsI | GAAGAC | 1 cut(s) | 1020 |
| Bbv12I | GWGCWC | 2 cut(s) | 220, 544 |
| BbvI | GCAGC | 2 cut(s) | 563, 607 |
| BccI | CCATC | 5 cut(s) | 92, 134, 511, 1007, 1045 |
| BceAI | ACGGC | 1 cut(s) | 32 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1021, 1055 |
| BcnI | CCSGG | 1 cut(s) | 296 |
| BfaI | CTAG | 4 cut(s) | 84, 164, 591, 1242 |
| BfmI | CTRYAG | 1 cut(s) | 723 |
| BglII | AGATCT | 3 cut(s) | 132, 246, 738 |
| BisI | GCNGC | 3 cut(s) | 20, 552, 621 |
| BlsI | GCNGC | 3 cut(s) | 21, 553, 622 |
| Bme1390I | CCNGG | 1 cut(s) | 296 |
| Bme18I | GGWCC | 4 cut(s) | 482, 1082, 1147, 1332 |
| BmeT110I | CYCGRG | 1 cut(s) | 663 |
| BmgT120I | GGNCC | 4 cut(s) | 482, 1082, 1147, 1332 |
| BmiI | GGNNCC | 7 cut(s) | 395, 484, 498, 856, 985, 1117, 1333 |
| BmrFI | CCNGG | 1 cut(s) | 296 |
| BmsI | GCATC | 7 cut(s) | 316, 723, 782, 820, 829, 1037, 1216 |
| BpiI | GAAGAC | 1 cut(s) | 1020 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 657, 689, 1392, 1424 |
| BpmI | CTGGAG | 1 cut(s) | 437 |
| BpuEI | CTTGAG | 2 cut(s) | 251, 653 |
| BpuMI | CCSGG | 1 cut(s) | 296 |
| BsaAI | YACGTR | 1 cut(s) | 371 |
| BsaBI | GATNNNNATC | 1 cut(s) | 737 |
| BsaJI | CCNNGG | 3 cut(s) | 624, 874, 1150 |
| BsaWI | WCCGGW | 1 cut(s) | 280 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 295, 390 |
| Bse1I | ACTGG | 1 cut(s) | 815 |
| Bse3DI | GCAATG | 2 cut(s) | 32, 122 |
| Bse8I | GATNNNNATC | 1 cut(s) | 737 |
| BseAI | TCCGGA | 1 cut(s) | 280 |
| BseDI | CCNNGG | 3 cut(s) | 624, 874, 1150 |
| BseGI | GGATG | 1 cut(s) | 869 |
| BseJI | GATNNNNATC | 1 cut(s) | 737 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 295, 390 |
| BseMI | GCAATG | 2 cut(s) | 32, 122 |
| BseMII | CTCAG | 3 cut(s) | 276, 369, 603 |
| BseNI | ACTGG | 1 cut(s) | 815 |
| BseRI | GAGGAG | 4 cut(s) | 119, 122, 170, 484 |
| BseXI | GCAGC | 2 cut(s) | 563, 607 |
| BseYI | CCCAGC | 1 cut(s) | 935 |
| Bsh1236I | CGCG | 1 cut(s) | 685 |
| BshFI | GGCC | 1 cut(s) | 199 |
| BshNI | GGYRCC | 3 cut(s) | 854, 983, 1115 |
| BsiHKAI | GWGCWC | 2 cut(s) | 220, 544 |
| BsiHKCI | CYCGRG | 1 cut(s) | 663 |
| BsiSI | CCGG | 2 cut(s) | 281, 295 |
| BslFI | GGGAC | 3 cut(s) | 367, 881, 1345 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 295, 390 |
| BsmFI | GGGAC | 3 cut(s) | 367, 881, 1345 |
| BsmI | GAATGC | 2 cut(s) | 1266, 1310 |
| BsnI | GGCC | 1 cut(s) | 199 |
| BsoBI | CYCGRG | 1 cut(s) | 663 |
| Bsp1286I | GDGCHC | 4 cut(s) | 220, 398, 544, 656 |
| Bsp13I | TCCGGA | 1 cut(s) | 280 |
| Bsp143I | GATC | 5 cut(s) | 132, 246, 277, 496, 738 |
| Bsp19I | CCATGG | 2 cut(s) | 624, 874 |
| BspACI | CCGC | 2 cut(s) | 19, 698 |
| BspANI | GGCC | 1 cut(s) | 199 |
| BspCNI | CTCAG | 3 cut(s) | 275, 370, 604 |
| BspEI | TCCGGA | 1 cut(s) | 280 |
| BspFNI | CGCG | 1 cut(s) | 685 |
| BspLI | GGNNCC | 7 cut(s) | 395, 484, 498, 856, 985, 1117, 1333 |
| BspPI | GGATC | 3 cut(s) | 272, 491, 504 |
| BspQI | GCTCTTC | 1 cut(s) | 753 |
| BspT107I | GGYRCC | 3 cut(s) | 854, 983, 1115 |
| BsrDI | GCAATG | 2 cut(s) | 32, 122 |
| BsrI | ACTGG | 1 cut(s) | 815 |
| BssECI | CCNNGG | 3 cut(s) | 624, 874, 1150 |
| BssMI | GATC | 5 cut(s) | 132, 246, 277, 496, 738 |
| BssT1I | CCWWGG | 3 cut(s) | 624, 874, 1150 |
| Bst4CI | ACNGT | 3 cut(s) | 290, 1223, 1381 |
| Bst6I | CTCTTC | 2 cut(s) | 748, 753 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 839, 1180 |
| BstBAI | YACGTR | 1 cut(s) | 371 |
| BstC8I | GCNNGC | 1 cut(s) | 197 |
| BstDEI | CTNAG | 8 cut(s) | 136, 262, 378, 513, 612, 648, 1043, 1431 |
| BstDSI | CCRYGG | 2 cut(s) | 624, 874 |
| BstEII | GGTNACC | 1 cut(s) | 363 |
| BstF5I | GGATG | 1 cut(s) | 869 |
| BstFNI | CGCG | 1 cut(s) | 685 |
| BstHHI | GCGC | 1 cut(s) | 195 |
| BstKTI | GATC | 5 cut(s) | 135, 249, 280, 499, 741 |
| BstMBI | GATC | 5 cut(s) | 132, 246, 277, 496, 738 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 25, 34, 263, 548, 617, 626, 635, 839, 1180 |
| BstPI | GGTNACC | 1 cut(s) | 363 |
| BstSCI | CCNGG | 1 cut(s) | 294 |
| BstSFI | CTRYAG | 1 cut(s) | 723 |
| BstUI | CGCG | 1 cut(s) | 685 |
| BstV1I | GCAGC | 2 cut(s) | 563, 607 |
| BstV2I | GAAGAC | 1 cut(s) | 1020 |
| BstX2I | RGATCY | 4 cut(s) | 132, 246, 496, 738 |
| BstYI | RGATCY | 4 cut(s) | 132, 246, 496, 738 |
| BsuRI | GGCC | 1 cut(s) | 199 |
| BtgI | CCRYGG | 2 cut(s) | 624, 874 |
| BtsCI | GGATG | 1 cut(s) | 869 |
| BtsIMutI | CAGTG | 1 cut(s) | 1228 |
| Cac8I | GCNNGC | 1 cut(s) | 197 |
| CaiI | CAGNNNCTG | 3 cut(s) | 460, 557, 1076 |
| CfoI | GCGC | 1 cut(s) | 195 |
| Cfr13I | GGNCC | 4 cut(s) | 482, 1082, 1147, 1332 |
| CseI | GACGC | 1 cut(s) | 318 |
| Csp6I | GTAC | 3 cut(s) | 286, 855, 1418 |
| CviAII | CATG | 4 cut(s) | 487, 625, 749, 875 |
| CviQI | GTAC | 3 cut(s) | 286, 855, 1418 |
| DdeI | CTNAG | 8 cut(s) | 136, 262, 378, 513, 612, 648, 1043, 1431 |
| DpnI | GATC | 5 cut(s) | 134, 248, 279, 498, 740 |
| DpnII | GATC | 5 cut(s) | 132, 246, 277, 496, 738 |
| Eam1104I | CTCTTC | 2 cut(s) | 748, 753 |
| EarI | CTCTTC | 2 cut(s) | 748, 753 |
| Eco130I | CCWWGG | 3 cut(s) | 624, 874, 1150 |
| Eco24I | GRGCYC | 2 cut(s) | 398, 656 |
| Eco47I | GGWCC | 4 cut(s) | 482, 1082, 1147, 1332 |
| Eco57I | CTGAAG | 8 cut(s) | 96, 482, 594, 627, 750, 876, 975, 1110 |
| Eco88I | CYCGRG | 1 cut(s) | 663 |
| Eco91I | GGTNACC | 1 cut(s) | 363 |
| EcoO109I | RGGNCCY | 2 cut(s) | 482, 1147 |
| EcoO65I | GGTNACC | 1 cut(s) | 363 |
| EcoT14I | CCWWGG | 3 cut(s) | 624, 874, 1150 |
| EcoT38I | GRGCYC | 2 cut(s) | 398, 656 |
| ErhI | CCWWGG | 3 cut(s) | 624, 874, 1150 |
| FaeI | CATG | 4 cut(s) | 490, 628, 752, 878 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1185, 1217 |
| FaqI | GGGAC | 3 cut(s) | 367, 881, 1345 |
| FatI | CATG | 4 cut(s) | 486, 624, 748, 874 |
| Fnu4HI | GCNGC | 3 cut(s) | 20, 552, 621 |
| FokI | GGATG | 1 cut(s) | 856 |
| FriOI | GRGCYC | 2 cut(s) | 398, 656 |
| Fsp4HI | GCNGC | 3 cut(s) | 20, 552, 621 |
| FspBI | CTAG | 4 cut(s) | 84, 164, 591, 1242 |
| FspI | TGCGCA | 1 cut(s) | 194 |
| GlaI | GCGC | 1 cut(s) | 194 |
| GluI | GCNGC | 3 cut(s) | 20, 552, 621 |
| GsaI | CCCAGC | 1 cut(s) | 939 |
| GsuI | CTGGAG | 1 cut(s) | 437 |
| HaeIII | GGCC | 1 cut(s) | 199 |
| HapII | CCGG | 2 cut(s) | 281, 295 |
| HgaI | GACGC | 1 cut(s) | 318 |
| HhaI | GCGC | 1 cut(s) | 195 |
| Hin1II | CATG | 4 cut(s) | 490, 628, 752, 878 |
| Hin6I | GCGC | 1 cut(s) | 193 |
| HinP1I | GCGC | 1 cut(s) | 193 |
| HindIII | AAGCTT | 2 cut(s) | 146, 1428 |
| HinfI | GANTC | 7 cut(s) | 122, 380, 719, 1214, 1259, 1315, 1343 |
| HpaII | CCGG | 2 cut(s) | 281, 295 |
| HphI | GGTGA | 4 cut(s) | 113, 357, 988, 1159 |
| Hpy166II | GTNNAC | 1 cut(s) | 1167 |
| Hpy188I | TCNGA | 8 cut(s) | 539, 825, 1050, 1086, 1219, 1249, 1258, 1276 |
| Hpy188III | TCNNGA | 7 cut(s) | 84, 164, 230, 281, 354, 454, 632 |
| Hpy8I | GTNNAC | 1 cut(s) | 1167 |
| HpyAV | CCTTC | 8 cut(s) | 384, 610, 774, 796, 900, 922, 1051, 1374 |
| HpyCH4III | ACNGT | 3 cut(s) | 290, 1223, 1381 |
| HpyCH4IV | ACGT | 1 cut(s) | 370 |
| HpyCH4V | TGCA | 9 cut(s) | 37, 115, 644, 736, 773, 833, 842, 1028, 1174 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 25, 34, 263, 548, 617, 626, 635, 839, 1180 |
| HpyF3I | CTNAG | 8 cut(s) | 136, 262, 378, 513, 612, 648, 1043, 1431 |
| HpySE526I | ACGT | 1 cut(s) | 370 |
| Hsp92II | CATG | 4 cut(s) | 490, 628, 752, 878 |
| HspAI | GCGC | 1 cut(s) | 193 |
| Kpn2I | TCCGGA | 1 cut(s) | 280 |
| KpnI | GGTACC | 1 cut(s) | 858 |
| Kzo9I | GATC | 5 cut(s) | 132, 246, 277, 496, 738 |
| LguI | GCTCTTC | 1 cut(s) | 753 |
| LmnI | GCTCC | 2 cut(s) | 393, 1249 |
| Lsp1109I | GCAGC | 2 cut(s) | 563, 607 |
| LweI | GCATC | 7 cut(s) | 316, 723, 782, 820, 829, 1037, 1216 |
| MaeI | CTAG | 4 cut(s) | 84, 164, 591, 1242 |
| MaeII | ACGT | 1 cut(s) | 370 |
| MaeIII | GTNAC | 3 cut(s) | 290, 363, 1381 |
| MalI | GATC | 5 cut(s) | 134, 248, 279, 498, 740 |
| MboI | GATC | 5 cut(s) | 132, 246, 277, 496, 738 |
| MboII | GAAGA | 8 cut(s) | 256, 431, 735, 770, 1025, 1205, 1310, 1364 |
| MfeI | CAATTG | 1 cut(s) | 714 |
| MflI | RGATCY | 4 cut(s) | 132, 246, 496, 738 |
| MhlI | GDGCHC | 4 cut(s) | 220, 398, 544, 656 |
| MluCI | AATT | 7 cut(s) | 43, 69, 429, 705, 714, 1134, 1280 |
| MlyI | GAGTC | 2 cut(s) | 389, 1208 |
| MmeI | TCCRAC | 1 cut(s) | 1109 |
| MroI | TCCGGA | 1 cut(s) | 280 |
| MseI | TTAA | 3 cut(s) | 68, 150, 447 |
| MslI | CAYNNNNRTG | 2 cut(s) | 753, 879 |
| MspI | CCGG | 2 cut(s) | 281, 295 |
| MspR9I | CCNGG | 1 cut(s) | 296 |
| MunI | CAATTG | 1 cut(s) | 714 |
| Mva1269I | GAATGC | 2 cut(s) | 1266, 1310 |
| MvnI | CGCG | 1 cut(s) | 685 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 25, 34, 263, 548, 617, 626, 635, 839, 1180 |
| NciI | CCSGG | 1 cut(s) | 296 |
| NcoI | CCATGG | 2 cut(s) | 624, 874 |
| NdeII | GATC | 5 cut(s) | 132, 246, 277, 496, 738 |
| NlaIII | CATG | 4 cut(s) | 490, 628, 752, 878 |
| NlaIV | GGNNCC | 7 cut(s) | 395, 484, 498, 856, 985, 1117, 1333 |
| NmuCI | GTSAC | 2 cut(s) | 290, 363 |
| NsbI | TGCGCA | 1 cut(s) | 194 |
| PaeR7I | CTCGAG | 1 cut(s) | 663 |
| PciSI | GCTCTTC | 1 cut(s) | 753 |
| PctI | GAATGC | 2 cut(s) | 1266, 1310 |
| PfeI | GAWTC | 5 cut(s) | 122, 719, 1259, 1315, 1343 |
| PkrI | GCNGC | 3 cut(s) | 21, 553, 622 |
| PleI | GAGTC | 2 cut(s) | 388, 1208 |
| PpsI | GAGTC | 2 cut(s) | 388, 1208 |
| Ppu21I | YACGTR | 1 cut(s) | 371 |
| PpuMI | RGGWCCY | 2 cut(s) | 482, 1147 |
| Psp5II | RGGWCCY | 2 cut(s) | 482, 1147 |
| PspEI | GGTNACC | 1 cut(s) | 363 |
| PspFI | CCCAGC | 1 cut(s) | 935 |
| PspN4I | GGNNCC | 7 cut(s) | 395, 484, 498, 856, 985, 1117, 1333 |
| PspPI | GGNCC | 4 cut(s) | 482, 1082, 1147, 1332 |
| PspPPI | RGGWCCY | 2 cut(s) | 482, 1147 |
| PspXI | VCTCGAGB | 1 cut(s) | 663 |
| PstNI | CAGNNNCTG | 3 cut(s) | 460, 557, 1076 |
| PsuI | RGATCY | 4 cut(s) | 132, 246, 496, 738 |
| RsaI | GTAC | 3 cut(s) | 287, 856, 1419 |
| RsaNI | GTAC | 3 cut(s) | 286, 855, 1418 |
| RseI | CAYNNNNRTG | 2 cut(s) | 753, 879 |
| SapI | GCTCTTC | 1 cut(s) | 753 |
| SaqAI | TTAA | 3 cut(s) | 68, 150, 447 |
| SatI | GCNGC | 3 cut(s) | 20, 552, 621 |
| Sau3AI | GATC | 5 cut(s) | 132, 246, 277, 496, 738 |
| Sau96I | GGNCC | 4 cut(s) | 482, 1082, 1147, 1332 |
| SchI | GAGTC | 2 cut(s) | 389, 1208 |
| ScrFI | CCNGG | 1 cut(s) | 296 |
| SduI | GDGCHC | 4 cut(s) | 220, 398, 544, 656 |
| SfaNI | GCATC | 7 cut(s) | 316, 723, 782, 820, 829, 1037, 1216 |
| SfcI | CTRYAG | 1 cut(s) | 723 |
| Sfr274I | CTCGAG | 1 cut(s) | 663 |
| SinI | GGWCC | 4 cut(s) | 482, 1082, 1147, 1332 |
| SlaI | CTCGAG | 1 cut(s) | 663 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 753, 879 |
| SmlI | CTYRAG | 3 cut(s) | 230, 632, 663 |
| SmoI | CTYRAG | 3 cut(s) | 230, 632, 663 |
| Sse9I | AATT | 7 cut(s) | 43, 69, 429, 705, 714, 1134, 1280 |
| SsiI | CCGC | 2 cut(s) | 19, 698 |
| SspI | AATATT | 1 cut(s) | 320 |
| SspMI | CTAG | 4 cut(s) | 84, 164, 591, 1242 |
| StyD4I | CCNGG | 1 cut(s) | 294 |
| StyI | CCWWGG | 3 cut(s) | 624, 874, 1150 |
| TaaI | ACNGT | 3 cut(s) | 290, 1223, 1381 |
| TaiI | ACGT | 1 cut(s) | 373 |
| TaqI | TCGA | 3 cut(s) | 664, 1031, 1399 |
| TaqII | GACCGA | 1 cut(s) | 699 |
| TasI | AATT | 7 cut(s) | 43, 69, 429, 705, 714, 1134, 1280 |
| TauI | GCSGC | 1 cut(s) | 22 |
| TfiI | GAWTC | 5 cut(s) | 122, 719, 1259, 1315, 1343 |
| Tru1I | TTAA | 3 cut(s) | 68, 150, 447 |
| Tru9I | TTAA | 3 cut(s) | 68, 150, 447 |
| TscAI | CASTG | 1 cut(s) | 1228 |
| TseFI | GTSAC | 2 cut(s) | 290, 363 |
| TseI | GCWGC | 2 cut(s) | 551, 620 |
| Tsp45I | GTSAC | 2 cut(s) | 290, 363 |
| TspGWI | ACGGA | 1 cut(s) | 1227 |
| TspRI | CASTG | 1 cut(s) | 1228 |
| VpaK11BI | GGWCC | 4 cut(s) | 482, 1082, 1147, 1332 |
| XapI | RAATTY | 1 cut(s) | 429 |
| XbaI | TCTAGA | 2 cut(s) | 83, 163 |
| XhoI | CTCGAG | 1 cut(s) | 663 |
| XspI | CTAG | 4 cut(s) | 84, 164, 591, 1242 |