FvH4_6g39310

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014775
Physical Location & Seq
Reverse (-)
31056449 .. 31058145
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39310.t1

Sequence Viewer

Length: 1497 bp
ATGGAGAGAGCAGAGCTGGTCTTCGTTCCCACTCCGGCAGTAGGCCATCTTGTATCCGCTATAGAGTTTGCTATACGTTTGTTGGATCAATGCCATCGATTCTCGGTAACAATTCTTGTAATGAAGTCACCATTTGGAGTCACTGGGGATCAGTCACTTCCAGCAGCCTCCCACACCCACATAAAATTCATCCATCTTCCCAACGTTGATCCCCCAACTGAGCTAGTGTCTGCTAAAAAGTACCTCACCGATTACATCGAGAACTATAAGAGCCATGTCAGGGACACCATTTTCAACCGGGTGTTGCCAAACACGTCTCAAGTTGCTGGAATGGTTGTTGACATGTTCTGCACCACTATGATTGACATAGCCAATGAGCTCAAGGTTCCATCTTTTATTTTCTTCACTTCCGGTGCAGCTTATCTCGGTTTGTTGCTGTACCACCCCAAAGGAGTTGGCAAGTTGTTCGATGAATCAGATTGCGAATCAATCATACCGAGTTATATCCACCCAGTTCCCACAAATGCATTGCCTGCATTTGCATTCAACTATGGTGGATACATGTCATTTGTAAACCATGCTAGGAGGTTCATGGATGCATTGCCTGCATTTGCATTCAACTATGGTGGATACATGTCATTTGTAAACCATGCTAGGAGGTTCATGGAGACCAAGGGTATCATTGTCAACACGTTTGTTGAGCTCGAATCTCAAGCTGTTCACTCGCTCTTTGATGGTAATGAAAATTATCAAAGTAAATTGCATCCCCAGGTTTATAAAATCGGGCCCTTAATTGACATCAAAGGTAGGTATCAAGTTCAGTCTAACCAGGCCAAAGTTGACAAGATCATGAAATGGCTTGATGATCAGCCCCCAAAATCAGTGGTGTTCCTCTGCTTTGGAAGCTCTGGGAGCTTTGATGAGAGCCAACTGAAAGAGATAGCAATTGGTCTAGAGCAGAGTGGCCAGAGGTTCTTGTGGTCAGTGCGTCAAAGCCCACCTACAGGAACCCTGGCAATGCCAGGTGAATACACAAATTATGAAGATTTTTTGCCTCCAGATTTTTCCAAGAGGACTAAAGGGATAGGAATGTTGTGTGGATGGGCACCTCAAGCAGAGGTTTTAGGTCATAAAGCAATCGGAGGATTTGTGTCGCATTGTGGGTGGAATTCTATATTGGAGAGCCTATGGTTTGGTGTACCTATTGTGACTTGGCCAATATATGCAGAACAACAGATCAATGCGTTTCAAATGGCGAGGGATTTGGGATTGGGGATGGAGTTGAGAGTTGTATACAAAAAGGATGGTGCTGACTTTGTAACCGCAGATGAAATTAAAAGAGCTCTGAGACGTTTGATGGAGGGTGATGGTGAAATTAGGAAGAGGGTTCAGGAAATGAGTGGAATATGCAGGAAGGCTGTTGCTGATGGTGGGTCTTCTTCTGCTTCTTTTGGAAGCTTAATTGAGGTCGTGTTAGGGAGCCTAAAAATCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

499

Amino Acids

55.42

Weight (kDa)

6.54

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 283 - 428 1.7e-22 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014775)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g39310 FvH4_6g39311 FvH4_6g39311
malus_domestica MD09G1142000.v1.1 MD09G1143400.v1.1
prunus_persica Prupe.3G184400_v2.0.a1
pyrus_communis pycom09g06230 pycom11g06430
rosa_chinensis RchiOBHm_Chr2g0153231
rosa_laevigata RLG00000020687
rosa_multiflora Rmu_sc0000442.1_g000004 Rmu_sc0000442.1_g000007
rosa_roxburghii Rroxscaffold_2G00095080
rosa_rugosa Rorug02G0437600
rosa_samantha Rh2AG500600 Rh2CG486900
rosa_wichuraiana Rw2G041090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AccB1I GGYRCC 1 cut(s) 1105
AccI GTMKAC 1 cut(s) 1293
AciI CCGC 2 cut(s) 57, 1323
AclI AACGTT 1 cut(s) 204
AclWI GGATC 3 cut(s) 93, 156, 203
AcoI YGGCCR 2 cut(s) 964, 1214
AcsI RAATTY 2 cut(s) 185, 1168
AfaI GTAC 3 cut(s) 242, 440, 1200
AfiI CCNNNNNNNGG 3 cut(s) 41, 280, 1004
AflIII ACRYGT 5 cut(s) 312, 342, 561, 633, 690
AgsI TTSAA 4 cut(s) 295, 547, 619, 1250
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 4 cut(s) 768, 828, 1011, 1021
AjuI GAANNNNNNNTTGG 2 cut(s) 1160, 1192
Alw21I GWGCWC 3 cut(s) 381, 705, 1345
Alw26I GTCTC 3 cut(s) 321, 662, 1342
AlwI GGATC 3 cut(s) 93, 156, 203
AoxI GGCC 5 cut(s) 43, 785, 831, 964, 1214
ApaI GGGCCC 1 cut(s) 789
ApeKI GCWGC 2 cut(s) 164, 416
ApoI RAATTY 2 cut(s) 185, 1168
AspS9I GGNCC 2 cut(s) 785, 786
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 5 cut(s) 120, 238, 1037, 1376, 1382
BaeGI GKGCMC 2 cut(s) 789, 1108
BalI TGGCCA 2 cut(s) 966, 1216
BanI GGYRCC 1 cut(s) 1105
BanII GRGCYC 4 cut(s) 381, 705, 789, 1345
BbsI GAAGAC 2 cut(s) 13, 1428
Bbv12I GWGCWC 3 cut(s) 381, 705, 1345
BbvI GCAGC 2 cut(s) 176, 428
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BciT130I CCWGG 4 cut(s) 770, 830, 1013, 1023
BciVI GTATCC 3 cut(s) 64, 551, 623
BclI TGATCA 1 cut(s) 865
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 3 cut(s) 321, 662, 1342
BfaI CTAG 4 cut(s) 224, 582, 654, 953
BfmI CTRYAG 2 cut(s) 60, 1002
BfuI GTATCC 3 cut(s) 64, 551, 623
BisI GCNGC 2 cut(s) 165, 417
BlsI GCNGC 2 cut(s) 166, 418
Bme1390I CCNGG 5 cut(s) 299, 770, 830, 1013, 1023
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 2 cut(s) 785, 786
BmiI GGNNCC 5 cut(s) 387, 787, 1009, 1107, 1481
BmrFI CCNGG 5 cut(s) 299, 770, 830, 1013, 1023
BmrI ACTGGG 2 cut(s) 153, 506
BmsI GCATC 2 cut(s) 586, 772
BmuI ACTGGG 2 cut(s) 153, 506
BpiI GAAGAC 2 cut(s) 13, 1428
BpmI CTGGAG 1 cut(s) 1041
BpuEI CTTGAG 4 cut(s) 303, 365, 696, 1095
BpuMI CCSGG 1 cut(s) 299
Bsa29I ATCGAT 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 662
BsaJI CCNNGG 3 cut(s) 672, 768, 1011
BsaWI WCCGGW 1 cut(s) 410
BsaXI ACNNNNNCTCC 2 cut(s) 1134, 1164
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 280, 1004
Bse1I ACTGG 2 cut(s) 148, 512
Bse3DI GCAATG 3 cut(s) 527, 599, 1023
BseBI CCWGG 4 cut(s) 770, 830, 1013, 1023
BseCI ATCGAT 1 cut(s) 97
BseDI CCNNGG 3 cut(s) 672, 768, 1011
BseGI GGATG 6 cut(s) 189, 601, 763, 1106, 1281, 1309
BseLI CCNNNNNNNGG 3 cut(s) 41, 280, 1004
BseMI GCAATG 3 cut(s) 527, 599, 1023
BseMII CTCAG 2 cut(s) 210, 1337
BseNI ACTGG 2 cut(s) 148, 512
BseSI GKGCMC 2 cut(s) 789, 1108
BseXI GCAGC 2 cut(s) 176, 428
BsgI GTGCAG 2 cut(s) 334, 435
BshFI GGCC 5 cut(s) 45, 787, 833, 966, 1216
BshNI GGYRCC 1 cut(s) 1105
BshVI ATCGAT 1 cut(s) 97
BsiHKAI GWGCWC 3 cut(s) 381, 705, 1345
BsiSI CCGG 3 cut(s) 35, 298, 411
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 3 cut(s) 41, 280, 1004
BsmAI GTCTC 3 cut(s) 321, 662, 1342
BsmBI CGTCTC 2 cut(s) 321, 1342
BsmFI GGGAC 1 cut(s) 296
BsmI GAATGC 2 cut(s) 542, 614
BsnI GGCC 5 cut(s) 45, 787, 833, 966, 1216
Bso31I GGTCTC 1 cut(s) 662
Bsp120I GGGCCC 1 cut(s) 785
Bsp1286I GDGCHC 5 cut(s) 381, 705, 789, 1108, 1345
Bsp143I GATC 6 cut(s) 85, 148, 208, 846, 865, 1236
BspACI CCGC 2 cut(s) 57, 1323
BspANI GGCC 5 cut(s) 45, 787, 833, 966, 1216
BspCNI CTCAG 2 cut(s) 211, 1338
BspDI ATCGAT 1 cut(s) 97
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 5 cut(s) 387, 787, 1009, 1107, 1481
BspPI GGATC 3 cut(s) 93, 156, 203
BspT107I GGYRCC 1 cut(s) 1105
BspTNI GGTCTC 1 cut(s) 662
BsrDI GCAATG 3 cut(s) 527, 599, 1023
BsrI ACTGG 2 cut(s) 148, 512
BssECI CCNNGG 3 cut(s) 672, 768, 1011
BssMI GATC 6 cut(s) 85, 148, 208, 846, 865, 1236
BssNAI GTATAC 1 cut(s) 1294
BssT1I CCWWGG 1 cut(s) 672
Bst1107I GTATAC 1 cut(s) 1294
Bst2UI CCWGG 4 cut(s) 770, 830, 1013, 1023
Bst6I CTCTTC 1 cut(s) 1376
BstAPI GCANNNNNTGC 2 cut(s) 533, 605
BstC8I GCNNGC 2 cut(s) 534, 606
BstDEI CTNAG 2 cut(s) 219, 1346
BstF5I GGATG 6 cut(s) 189, 601, 763, 1106, 1281, 1309
BstKTI GATC 6 cut(s) 88, 151, 211, 849, 868, 1239
BstMAI GTCTC 3 cut(s) 321, 662, 1342
BstMBI GATC 6 cut(s) 85, 148, 208, 846, 865, 1236
BstMWI GCNNNNNNNGC 5 cut(s) 533, 605, 903, 912, 1112
BstNI CCWGG 4 cut(s) 770, 830, 1013, 1023
BstNSI RCATGY 3 cut(s) 346, 565, 637
BstSCI CCNGG 5 cut(s) 297, 768, 828, 1011, 1021
BstSFI CTRYAG 2 cut(s) 60, 1002
BstSLI GKGCMC 2 cut(s) 789, 1108
BstV1I GCAGC 2 cut(s) 176, 428
BstV2I GAAGAC 2 cut(s) 13, 1428
BstZ17I GTATAC 1 cut(s) 1294
Bsu15I ATCGAT 1 cut(s) 97
BsuI GTATCC 3 cut(s) 64, 551, 623
BsuRI GGCC 5 cut(s) 45, 787, 833, 966, 1216
BsuTUI ATCGAT 1 cut(s) 97
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 6 cut(s) 189, 601, 763, 1106, 1281, 1309
BtsIMutI CAGTG 3 cut(s) 141, 888, 990
Cac8I GCNNGC 2 cut(s) 534, 606
CciI TCATGA 1 cut(s) 849
Cfr13I GGNCC 2 cut(s) 785, 786
ClaI ATCGAT 1 cut(s) 97
CseI GACGC 1 cut(s) 977
Csp6I GTAC 3 cut(s) 241, 439, 1199
CspCI CAANNNNNGTGG 8 cut(s) 343, 378, 535, 570, 607, 642, 864, 899
CviAII CATG 9 cut(s) 275, 343, 562, 578, 592, 634, 650, 664, 850
CviQI GTAC 3 cut(s) 241, 439, 1199
DdeI CTNAG 2 cut(s) 219, 1346
DpnI GATC 6 cut(s) 87, 150, 210, 848, 867, 1238
DpnII GATC 6 cut(s) 85, 148, 208, 846, 865, 1236
EaeI YGGCCR 2 cut(s) 964, 1214
Eam1104I CTCTTC 1 cut(s) 1376
EarI CTCTTC 1 cut(s) 1376
Ecl136II GAGCTC 3 cut(s) 379, 703, 1343
Eco130I CCWWGG 1 cut(s) 672
Eco24I GRGCYC 4 cut(s) 381, 705, 789, 1345
Eco31I GGTCTC 1 cut(s) 662
Eco53kI GAGCTC 3 cut(s) 379, 703, 1343
EcoICRI GAGCTC 3 cut(s) 379, 703, 1343
EcoO109I RGGNCCY 1 cut(s) 786
EcoRI GAATTC 1 cut(s) 1168
EcoRII CCWGG 4 cut(s) 768, 828, 1011, 1021
EcoT14I CCWWGG 1 cut(s) 672
EcoT22I ATGCAT 2 cut(s) 529, 601
EcoT38I GRGCYC 4 cut(s) 381, 705, 789, 1345
ErhI CCWWGG 1 cut(s) 672
Esp3I CGTCTC 2 cut(s) 321, 1342
FaeI CATG 9 cut(s) 278, 346, 565, 581, 595, 637, 653, 667, 853
FaqI GGGAC 1 cut(s) 296
FatI CATG 9 cut(s) 274, 342, 561, 577, 591, 633, 649, 663, 849
FbaI TGATCA 1 cut(s) 865
FblI GTMKAC 1 cut(s) 1293
Fnu4HI GCNGC 2 cut(s) 165, 417
FokI GGATG 6 cut(s) 176, 608, 750, 1113, 1288, 1316
FriOI GRGCYC 4 cut(s) 381, 705, 789, 1345
Fsp4HI GCNGC 2 cut(s) 165, 417
FspBI CTAG 4 cut(s) 224, 582, 654, 953
GluI GCNGC 2 cut(s) 165, 417
GsuI CTGGAG 1 cut(s) 1041
HaeIII GGCC 5 cut(s) 45, 787, 833, 966, 1216
HapII CCGG 3 cut(s) 35, 298, 411
HgaI GACGC 1 cut(s) 977
Hin1II CATG 9 cut(s) 278, 346, 565, 581, 595, 637, 653, 667, 853
HincII GTYRAC 3 cut(s) 340, 688, 841
HindII GTYRAC 3 cut(s) 340, 688, 841
HindIII AAGCTT 1 cut(s) 1456
HinfI GANTC 5 cut(s) 99, 138, 473, 485, 707
HpaII CCGG 3 cut(s) 35, 298, 411
HphI GGTGA 5 cut(s) 120, 238, 1037, 1376, 1382
Hpy166II GTNNAC 8 cut(s) 340, 574, 646, 688, 721, 841, 1199, 1294
Hpy188I TCNGA 3 cut(s) 478, 1142, 1347
Hpy188III TCNNGA 5 cut(s) 259, 850, 953, 1058, 1391
Hpy8I GTNNAC 8 cut(s) 340, 574, 646, 688, 721, 841, 1199, 1294
HpyAV CCTTC 1 cut(s) 1408
HpyCH4IV ACGT 5 cut(s) 76, 204, 314, 692, 1351
HpyF10VI GCNNNNNNNGC 5 cut(s) 533, 605, 903, 912, 1112
HpyF3I CTNAG 2 cut(s) 219, 1346
HpySE526I ACGT 5 cut(s) 76, 204, 314, 692, 1351
Hsp92II CATG 9 cut(s) 278, 346, 565, 581, 595, 637, 653, 667, 853
Ksp22I TGATCA 1 cut(s) 865
Kzo9I GATC 6 cut(s) 85, 148, 208, 846, 865, 1236
LmnI GCTCC 2 cut(s) 912, 1479
Lsp1109I GCAGC 2 cut(s) 176, 428
LweI GCATC 2 cut(s) 586, 772
MaeI CTAG 4 cut(s) 224, 582, 654, 953
MaeII ACGT 5 cut(s) 76, 204, 314, 692, 1351
MaeIII GTNAC 6 cut(s) 106, 126, 139, 153, 1207, 1318
MalI GATC 6 cut(s) 87, 150, 210, 848, 867, 1238
MboI GATC 6 cut(s) 85, 148, 208, 846, 865, 1236
MboII GAAGA 7 cut(s) 13, 188, 394, 1055, 1393, 1428, 1431
MfeI CAATTG 1 cut(s) 945
MhlI GDGCHC 5 cut(s) 381, 705, 789, 1108, 1345
MlsI TGGCCA 2 cut(s) 966, 1216
MluNI TGGCCA 2 cut(s) 966, 1216
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 63
Mox20I TGGCCA 2 cut(s) 966, 1216
Mph1103I ATGCAT 2 cut(s) 529, 601
MscI TGGCCA 2 cut(s) 966, 1216
MseI TTAA 3 cut(s) 791, 1335, 1460
MslI CAYNNNNRTG 1 cut(s) 356
Msp20I TGGCCA 2 cut(s) 966, 1216
MspI CCGG 3 cut(s) 35, 298, 411
MspR9I CCNGG 5 cut(s) 299, 770, 830, 1013, 1023
MunI CAATTG 1 cut(s) 945
Mva1269I GAATGC 2 cut(s) 542, 614
MvaI CCWGG 4 cut(s) 770, 830, 1013, 1023
MwoI GCNNNNNNNGC 5 cut(s) 533, 605, 903, 912, 1112
NciI CCSGG 1 cut(s) 299
NdeII GATC 6 cut(s) 85, 148, 208, 846, 865, 1236
NlaIII CATG 9 cut(s) 278, 346, 565, 581, 595, 637, 653, 667, 853
NlaIV GGNNCC 5 cut(s) 387, 787, 1009, 1107, 1481
NmuCI GTSAC 4 cut(s) 126, 139, 153, 1207
NsiI ATGCAT 2 cut(s) 529, 601
NspI RCATGY 3 cut(s) 346, 565, 637
PagI TCATGA 1 cut(s) 849
PciI ACATGT 3 cut(s) 342, 561, 633
PctI GAATGC 2 cut(s) 542, 614
PfeI GAWTC 4 cut(s) 99, 473, 485, 707
PkrI GCNGC 2 cut(s) 166, 418
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PscI ACATGT 3 cut(s) 342, 561, 633
PsiI TTATAA 1 cut(s) 777
Psp124BI GAGCTC 3 cut(s) 381, 705, 1345
Psp1406I AACGTT 1 cut(s) 204
Psp6I CCWGG 4 cut(s) 768, 828, 1011, 1021
PspGI CCWGG 4 cut(s) 768, 828, 1011, 1021
PspN4I GGNNCC 5 cut(s) 387, 787, 1009, 1107, 1481
PspOMI GGGCCC 1 cut(s) 785
PspPI GGNCC 2 cut(s) 785, 786
RsaI GTAC 3 cut(s) 242, 440, 1200
RsaNI GTAC 3 cut(s) 241, 439, 1199
RseI CAYNNNNRTG 1 cut(s) 356
SacI GAGCTC 3 cut(s) 381, 705, 1345
SaqAI TTAA 3 cut(s) 791, 1335, 1460
SatI GCNGC 2 cut(s) 165, 417
Sau3AI GATC 6 cut(s) 85, 148, 208, 846, 865, 1236
Sau96I GGNCC 2 cut(s) 785, 786
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 5 cut(s) 299, 770, 830, 1013, 1023
SduI GDGCHC 5 cut(s) 381, 705, 789, 1108, 1345
SfaNI GCATC 2 cut(s) 586, 772
SfcI CTRYAG 2 cut(s) 60, 1002
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 4 cut(s) 318, 380, 711, 1110
SmoI CTYRAG 4 cut(s) 318, 380, 711, 1110
SsiI CCGC 2 cut(s) 57, 1323
SspMI CTAG 4 cut(s) 224, 582, 654, 953
SstI GAGCTC 3 cut(s) 381, 705, 1345
StyD4I CCNGG 5 cut(s) 297, 768, 828, 1011, 1021
StyI CCWWGG 1 cut(s) 672
TaiI ACGT 5 cut(s) 79, 207, 317, 695, 1354
TaqI TCGA 4 cut(s) 97, 258, 468, 705
TfiI GAWTC 4 cut(s) 99, 473, 485, 707
Tru1I TTAA 3 cut(s) 791, 1335, 1460
Tru9I TTAA 3 cut(s) 791, 1335, 1460
TscAI CASTG 3 cut(s) 148, 888, 990
TseFI GTSAC 4 cut(s) 126, 139, 153, 1207
TseI GCWGC 2 cut(s) 164, 416
Tsp45I GTSAC 4 cut(s) 126, 139, 153, 1207
TspDTI ATGAA 9 cut(s) 137, 178, 486, 580, 652, 756, 866, 1056, 1344
TspRI CASTG 3 cut(s) 148, 888, 990
XapI RAATTY 2 cut(s) 185, 1168
XbaI TCTAGA 1 cut(s) 952
XceI RCATGY 3 cut(s) 346, 565, 637
XmiI GTMKAC 1 cut(s) 1293
XspI CTAG 4 cut(s) 224, 582, 654, 953
Zsp2I ATGCAT 2 cut(s) 529, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.