MD09G1142000.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014775
Physical Location & Seq
Forward (+)
11092860 .. 11094776
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1142000.v1.1.491

Sequence Viewer

Length: 1377 bp
ATGAACAGATCAGAGCTGGTGTTTGTTCCGACACCGACGGTTGGTCATCTTGTATCAACCATAGAGTTTTCGAAACGATTACTCGACTGTTGTGACAAATTCTCTGTCACAATCCTTGTCATGGAATCAGCATTTGAATCCTCAACTACTTTGATCTCAAACCCTAGCACTACTCAATCACTTGCAGCCTCCCATGCCCACATAAAAATCGTAGACCTTCCCAGTGTGCACCGCCCACTCGAGATTCTTCAACAATCTGTGGAGAAATACCTCACCGTTTTCATAGAGAACTACAAGTGTCACGTAAGAGACGCAATAGCCAACCCCTATGAGCTCAAGGTTCCATCTTATCTGTTTTTCACTTCCGGGGCTGGTTTTCTAGGGCTTCTTCTCCACCTTCCCGGACGCTATGACCGACTTGGCATGGTGTTCAAACCATCGGACCCTGAGTCGGTCGTGCCGAGTTATGCCAACCCAGTTCCTGCAAATGTTCTTCCTTCGTTTGCTTACGAGGACACCGGGTACAGTTGCTTTGCAAACCACGCTAGGAGGTTCAAGGAAACCAAGGGTATAATCGTCAACACGTTTTTTGAGCTGGAGTCCCATGCGGTTAGCTCACTTTTGGATTGTGAGACTGAGATCCCTCCTGTTTACACGGTGGGACCCCTTATTGGTGAGCATCATGTGAAACCGTCGGATCGGGCCAAATTTGGAAAGATCATGACGTGGCTTGATGATCAGCCTCCGAAATCAGTGGTGTTCCTCTGCTTTGGGAGCTCTGGAAGTTTTGATGAGGCCCAACTGAGAGAGATTGCAGTTGGATTAGAAAAGAGTGGTAAGAAATTCTTGTGGTCCGTAAGGAAAGCCCCACCTAAGGGCCAGCTTGTAACGCCAGGTGAGTACTCAAATTATGAGAAGTTTTTGCCTCAAGGATTCTTGGAGAGGACCAAAGATGTTGGTATTTTGTGTGGTTGGGCCCCACAAGTGGAGGTCCTGGCCCACAAAGCGACCGGAGGGTTCGTGTCGCACTGTGGATGGAACTCCATATCAGAGAGCTTGTGGCATGGTGTGCCTATTGTGACTTGGCCTCTGTATGCAGAGCAGCAGATTAATGCCTTTCAGATGGTGAAGGATTTGGGGTTGGCCGTGGAGCTGAGATTGGACTACAGAACAGACGGTGGTAATCATTTTGTGGTGGCAGATGAGATTGAGAAGGCTGTGAGGTGTGTGATGGACGGTGATGGTGCGGTGAGGAAGAGGGTTGAGGAGATGAGTGAAGTGTGTAGGAAGGCTGTTGGCGATGGTGGATCTTCCTCTACTTCGTTTCAACATTTGATTAAGGTTATGTTGGCACGCCTTGACAATAAGGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

459

Amino Acids

50.84

Weight (kDa)

6.04

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 248 - 387 3.5e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014775)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g39310 FvH4_6g39311 FvH4_6g39311
malus_domestica MD09G1142000.v1.1 MD09G1143400.v1.1
prunus_persica Prupe.3G184400_v2.0.a1
pyrus_communis pycom09g06230 pycom11g06430
rosa_chinensis RchiOBHm_Chr2g0153231
rosa_laevigata RLG00000020687
rosa_multiflora Rmu_sc0000442.1_g000004 Rmu_sc0000442.1_g000007
rosa_roxburghii Rroxscaffold_2G00095080
rosa_rugosa Rorug02G0437600
rosa_samantha Rh2AG500600 Rh2CG486900
rosa_wichuraiana Rw2G041090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AciI CCGC 3 cut(s) 232, 608, 1247
AclWI GGATC 3 cut(s) 634, 705, 1315
AcoI YGGCCR 1 cut(s) 1143
AcsI RAATTY 3 cut(s) 98, 707, 842
AfaI GTAC 2 cut(s) 524, 902
AfiI CCNNNNNNNGG 7 cut(s) 41, 121, 451, 671, 874, 875, 985
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 5 cut(s) 137, 251, 433, 556, 1328
AhdI GACNNNNNGTC 2 cut(s) 42, 448
AjiI CACGTC 1 cut(s) 726
AjnI CCWGG 2 cut(s) 892, 993
AluBI AGCT 8 cut(s) 16, 334, 595, 615, 777, 883, 1056, 1153
AluI AGCT 8 cut(s) 16, 334, 595, 615, 777, 883, 1056, 1153
Alw21I GWGCWC 3 cut(s) 231, 336, 779
Alw26I GTCTC 2 cut(s) 303, 626
Alw44I GTGCAC 1 cut(s) 227
AlwI GGATC 3 cut(s) 634, 705, 1315
AlwNI CAGNNNCTG 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 7 cut(s) 702, 795, 877, 975, 996, 1085, 1143
ApaI GGGCCC 1 cut(s) 979
ApaLI GTGCAC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 185, 1102
ApoI RAATTY 3 cut(s) 98, 707, 842
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AseI ATTAAT 1 cut(s) 1110
AsuC2I CCSGG 3 cut(s) 367, 402, 520
AsuHPI GGTGA 6 cut(s) 265, 686, 908, 1138, 1250, 1261
AsuII TTCGAA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 5 cut(s) 442, 662, 852, 945, 991
AxyI CCTNAGG 1 cut(s) 873
BaeGI GKGCMC 2 cut(s) 231, 979
BanII GRGCYC 3 cut(s) 336, 779, 979
Bbv12I GWGCWC 3 cut(s) 231, 336, 779
BbvI GCAGC 2 cut(s) 197, 1114
BccI CCATC 7 cut(s) 352, 445, 1029, 1117, 1225, 1235, 1295
BceAI ACGGC 1 cut(s) 1130
BciT130I CCWGG 2 cut(s) 894, 995
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 3 cut(s) 367, 402, 520
BcoDI GTCTC 2 cut(s) 303, 626
BfaI CTAG 3 cut(s) 165, 380, 546
BfmI CTRYAG 1 cut(s) 1165
BisI GCNGC 2 cut(s) 186, 1103
BlsI GCNGC 2 cut(s) 187, 1104
BmcAI AGTACT 1 cut(s) 902
Bme1390I CCNGG 5 cut(s) 367, 402, 520, 894, 995
Bme18I GGWCC 5 cut(s) 442, 662, 852, 945, 991
BmeRI GACNNNNNGTC 2 cut(s) 42, 448
BmeT110I CYCGRG 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 726
BmiI GGNNCC 6 cut(s) 342, 444, 663, 664, 977, 978
BmrFI CCNGG 5 cut(s) 367, 402, 520, 894, 995
BmrI ACTGGG 2 cut(s) 216, 470
BmsI GCATC 1 cut(s) 688
BmuI ACTGGG 2 cut(s) 216, 470
BpmI CTGGAG 1 cut(s) 617
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 2 cut(s) 320, 912
BpuMI CCSGG 3 cut(s) 367, 402, 520
BsaAI YACGTR 1 cut(s) 304
BsaJI CCNNGG 3 cut(s) 366, 564, 1146
BsaWI WCCGGW 1 cut(s) 1010
BsaXI ACNNNNNCTCC 2 cut(s) 1005, 1035
Bsc4I CCNNNNNNNGG 7 cut(s) 41, 121, 451, 671, 874, 875, 985
Bse1I ACTGG 2 cut(s) 222, 476
Bse21I CCTNAGG 1 cut(s) 873
BseBI CCWGG 2 cut(s) 894, 995
BseDI CCNNGG 3 cut(s) 366, 564, 1146
BseGI GGATG 1 cut(s) 1040
BseLI CCNNNNNNNGG 7 cut(s) 41, 121, 451, 671, 874, 875, 985
BseMII CTCAG 4 cut(s) 438, 627, 794, 1145
BseNI ACTGG 2 cut(s) 222, 476
BseRI GAGGAG 1 cut(s) 1280
BseSI GKGCMC 2 cut(s) 231, 979
BseXI GCAGC 2 cut(s) 197, 1114
Bsh1285I CGRYCG 2 cut(s) 456, 1011
BshFI GGCC 7 cut(s) 704, 797, 879, 977, 998, 1087, 1145
BsiEI CGRYCG 2 cut(s) 456, 1011
BsiHKAI GWGCWC 3 cut(s) 231, 336, 779
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 4 cut(s) 366, 402, 519, 1011
BslFI GGGAC 2 cut(s) 586, 675
BslI CCNNNNNNNGG 7 cut(s) 41, 121, 451, 671, 874, 875, 985
BsmAI GTCTC 2 cut(s) 303, 626
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 2 cut(s) 586, 675
BsnI GGCC 7 cut(s) 704, 797, 879, 977, 998, 1087, 1145
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 71
Bsp120I GGGCCC 1 cut(s) 975
Bsp1286I GDGCHC 4 cut(s) 231, 336, 779, 979
Bsp143I GATC 7 cut(s) 8, 153, 639, 697, 717, 736, 1307
BspACI CCGC 3 cut(s) 232, 608, 1247
BspANI GGCC 7 cut(s) 704, 797, 879, 977, 998, 1087, 1145
BspCNI CTCAG 4 cut(s) 439, 628, 795, 1146
BspHI TCATGA 1 cut(s) 720
BspLI GGNNCC 6 cut(s) 342, 444, 663, 664, 977, 978
BspPI GGATC 3 cut(s) 634, 705, 1315
BspT104I TTCGAA 1 cut(s) 71
BsrI ACTGG 2 cut(s) 222, 476
BssECI CCNNGG 3 cut(s) 366, 564, 1146
BssMI GATC 7 cut(s) 8, 153, 639, 697, 717, 736, 1307
BssT1I CCWWGG 1 cut(s) 564
Bst2UI CCWGG 2 cut(s) 894, 995
Bst4CI ACNGT 9 cut(s) 40, 89, 277, 527, 658, 693, 1031, 1178, 1238
Bst6I CTCTTC 1 cut(s) 1250
BstAPI GCANNNNNTGC 1 cut(s) 1069
BstBAI YACGTR 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 881, 1354
BstDEI CTNAG 5 cut(s) 447, 636, 803, 873, 1154
BstDSI CCRYGG 1 cut(s) 1146
BstF5I GGATG 1 cut(s) 1040
BstKTI GATC 7 cut(s) 11, 156, 642, 700, 720, 739, 1310
BstMAI GTCTC 2 cut(s) 303, 626
BstMBI GATC 7 cut(s) 8, 153, 639, 697, 717, 736, 1307
BstMCI CGRYCG 2 cut(s) 456, 1011
BstMWI GCNNNNNNNGC 6 cut(s) 194, 542, 774, 889, 1004, 1069
BstNI CCWGG 2 cut(s) 894, 995
BstSCI CCNGG 5 cut(s) 365, 400, 518, 892, 993
BstSFI CTRYAG 1 cut(s) 1165
BstSLI GKGCMC 2 cut(s) 231, 979
BstV1I GCAGC 2 cut(s) 197, 1114
BstX2I RGATCY 2 cut(s) 639, 1307
BstYI RGATCY 2 cut(s) 639, 1307
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 7 cut(s) 704, 797, 879, 977, 998, 1087, 1145
BtgI CCRYGG 1 cut(s) 1146
BtgZI GCGATG 1 cut(s) 1314
BtrI CACGTC 1 cut(s) 726
BtsCI GGATG 1 cut(s) 1040
BtsIMutI CAGTG 3 cut(s) 229, 759, 1027
Cac8I GCNNGC 2 cut(s) 881, 1354
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 1 cut(s) 720
CseI GACGC 2 cut(s) 320, 414
Csp6I GTAC 2 cut(s) 523, 901
CviAII CATG 7 cut(s) 121, 194, 424, 605, 683, 721, 1064
CviQI GTAC 2 cut(s) 523, 901
DdeI CTNAG 5 cut(s) 447, 636, 803, 873, 1154
DpnI GATC 7 cut(s) 10, 155, 641, 699, 719, 738, 1309
DpnII GATC 7 cut(s) 8, 153, 639, 697, 717, 736, 1307
DriI GACNNNNNGTC 2 cut(s) 42, 448
EaeI YGGCCR 1 cut(s) 1143
Eam1104I CTCTTC 1 cut(s) 1250
Eam1105I GACNNNNNGTC 2 cut(s) 42, 448
EarI CTCTTC 1 cut(s) 1250
Ecl136II GAGCTC 2 cut(s) 334, 777
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 3 cut(s) 336, 779, 979
Eco47I GGWCC 5 cut(s) 442, 662, 852, 945, 991
Eco53kI GAGCTC 2 cut(s) 334, 777
Eco81I CCTNAGG 1 cut(s) 873
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 2 cut(s) 334, 777
EcoO109I RGGNCCY 3 cut(s) 662, 976, 991
EcoRII CCWGG 2 cut(s) 892, 993
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 3 cut(s) 336, 779, 979
ErhI CCWWGG 1 cut(s) 564
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 7 cut(s) 124, 197, 427, 608, 686, 724, 1067
FalI AAGNNNNNCTT 2 cut(s) 830, 862
FaqI GGGAC 2 cut(s) 586, 675
FatI CATG 7 cut(s) 120, 193, 423, 604, 682, 720, 1063
FbaI TGATCA 1 cut(s) 736
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 186, 1103
FokI GGATG 1 cut(s) 1047
FriOI GRGCYC 3 cut(s) 336, 779, 979
Fsp4HI GCNGC 2 cut(s) 186, 1103
FspBI CTAG 3 cut(s) 165, 380, 546
GluI GCNGC 2 cut(s) 186, 1103
GsuI CTGGAG 1 cut(s) 617
HaeIII GGCC 7 cut(s) 704, 797, 879, 977, 998, 1087, 1145
HapII CCGG 4 cut(s) 366, 402, 519, 1011
HgaI GACGC 2 cut(s) 320, 414
Hin1II CATG 7 cut(s) 124, 197, 427, 608, 686, 724, 1067
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 6 cut(s) 125, 137, 244, 449, 599, 933
HpaII CCGG 4 cut(s) 366, 402, 519, 1011
HphI GGTGA 6 cut(s) 265, 686, 908, 1138, 1250, 1261
Hpy166II GTNNAC 4 cut(s) 214, 229, 580, 652
Hpy188I TCNGA 7 cut(s) 13, 30, 442, 697, 747, 1051, 1122
Hpy188III TCNNGA 3 cut(s) 241, 721, 780
Hpy8I GTNNAC 4 cut(s) 214, 229, 580, 652
Hpy99I CGWCG 2 cut(s) 40, 697
HpyAV CCTTC 6 cut(s) 227, 407, 507, 1123, 1207, 1282
HpyCH4III ACNGT 9 cut(s) 40, 89, 277, 527, 658, 693, 1031, 1178, 1238
HpyCH4IV ACGT 3 cut(s) 303, 584, 725
HpyCH4V TGCA 6 cut(s) 185, 229, 485, 536, 815, 1097
HpyF10VI GCNNNNNNNGC 6 cut(s) 194, 542, 774, 889, 1004, 1069
HpyF3I CTNAG 5 cut(s) 447, 636, 803, 873, 1154
HpySE526I ACGT 3 cut(s) 303, 584, 725
Hsp92II CATG 7 cut(s) 124, 197, 427, 608, 686, 724, 1067
KflI GGGWCCC 1 cut(s) 662
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 7 cut(s) 8, 153, 639, 697, 717, 736, 1307
LmnI GCTCC 2 cut(s) 774, 1150
Lsp1109I GCAGC 2 cut(s) 197, 1114
LweI GCATC 1 cut(s) 688
MaeI CTAG 3 cut(s) 165, 380, 546
MaeII ACGT 3 cut(s) 303, 584, 725
MaeIII GTNAC 5 cut(s) 92, 106, 299, 886, 1078
MalI GATC 7 cut(s) 10, 155, 641, 699, 719, 738, 1309
MboI GATC 7 cut(s) 8, 153, 639, 697, 717, 736, 1307
MboII GAAGA 5 cut(s) 239, 380, 485, 1267, 1302
MflI RGATCY 2 cut(s) 639, 1307
MhlI GDGCHC 4 cut(s) 231, 336, 779, 979
MluCI AATT 4 cut(s) 98, 707, 842, 907
MlyI GAGTC 2 cut(s) 458, 608
MmeI TCCRAC 3 cut(s) 53, 675, 799
MseI TTAA 2 cut(s) 1110, 1338
MspI CCGG 4 cut(s) 366, 402, 519, 1011
MspR9I CCNGG 5 cut(s) 367, 402, 520, 894, 995
MvaI CCWGG 2 cut(s) 894, 995
MwoI GCNNNNNNNGC 6 cut(s) 194, 542, 774, 889, 1004, 1069
NciI CCSGG 3 cut(s) 367, 402, 520
NdeII GATC 7 cut(s) 8, 153, 639, 697, 717, 736, 1307
NlaIII CATG 7 cut(s) 124, 197, 427, 608, 686, 724, 1067
NlaIV GGNNCC 6 cut(s) 342, 444, 663, 664, 977, 978
NmeAIII GCCGAG 1 cut(s) 486
NmuCI GTSAC 4 cut(s) 92, 106, 299, 1078
NspV TTCGAA 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 239
PagI TCATGA 1 cut(s) 720
PcsI WCGNNNNNNNCGW 2 cut(s) 412, 458
PfeI GAWTC 4 cut(s) 125, 137, 244, 933
PfoI TCCNGGA 1 cut(s) 400
PkrI GCNGC 2 cut(s) 187, 1104
PleI GAGTC 2 cut(s) 457, 607
PpsI GAGTC 2 cut(s) 457, 607
Ppu21I YACGTR 1 cut(s) 304
PpuMI RGGWCCY 2 cut(s) 662, 991
PshBI ATTAAT 1 cut(s) 1110
Psp124BI GAGCTC 2 cut(s) 336, 779
Psp5II RGGWCCY 2 cut(s) 662, 991
Psp6I CCWGG 2 cut(s) 892, 993
PspGI CCWGG 2 cut(s) 892, 993
PspN4I GGNNCC 6 cut(s) 342, 444, 663, 664, 977, 978
PspOMI GGGCCC 1 cut(s) 975
PspPPI RGGWCCY 2 cut(s) 662, 991
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 2 cut(s) 639, 1307
RsaI GTAC 2 cut(s) 524, 902
RsaNI GTAC 2 cut(s) 523, 901
SacI GAGCTC 2 cut(s) 336, 779
SaqAI TTAA 2 cut(s) 1110, 1338
SatI GCNGC 2 cut(s) 186, 1103
Sau3AI GATC 7 cut(s) 8, 153, 639, 697, 717, 736, 1307
ScaI AGTACT 1 cut(s) 902
SchI GAGTC 2 cut(s) 458, 608
ScrFI CCNGG 5 cut(s) 367, 402, 520, 894, 995
SduI GDGCHC 4 cut(s) 231, 336, 779, 979
SfaNI GCATC 1 cut(s) 688
SfcI CTRYAG 1 cut(s) 1165
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 71
SinI GGWCC 5 cut(s) 442, 662, 852, 945, 991
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 3 cut(s) 239, 335, 927
SmoI CTYRAG 3 cut(s) 239, 335, 927
Sse9I AATT 4 cut(s) 98, 707, 842, 907
SsiI CCGC 3 cut(s) 232, 608, 1247
SspMI CTAG 3 cut(s) 165, 380, 546
SstI GAGCTC 2 cut(s) 336, 779
StyD4I CCNGG 5 cut(s) 365, 400, 518, 892, 993
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 9 cut(s) 40, 89, 277, 527, 658, 693, 1031, 1178, 1238
TaiI ACGT 3 cut(s) 306, 587, 728
TaqI TCGA 3 cut(s) 71, 84, 240
TaqII GACCGA 2 cut(s) 429, 442
TasI AATT 4 cut(s) 98, 707, 842, 907
TatI WGTACW 1 cut(s) 900
TfiI GAWTC 4 cut(s) 125, 137, 244, 933
Tru1I TTAA 2 cut(s) 1110, 1338
Tru9I TTAA 2 cut(s) 1110, 1338
TscAI CASTG 3 cut(s) 229, 759, 1034
TseFI GTSAC 4 cut(s) 92, 106, 299, 1078
TseI GCWGC 2 cut(s) 185, 1102
Tsp45I GTSAC 4 cut(s) 92, 106, 299, 1078
TspDTI ATGAA 2 cut(s) 17, 271
TspGWI ACGGA 1 cut(s) 844
TspRI CASTG 3 cut(s) 229, 759, 1034
VneI GTGCAC 1 cut(s) 227
VpaK11BI GGWCC 5 cut(s) 442, 662, 852, 945, 991
VspI ATTAAT 1 cut(s) 1110
XapI RAATTY 3 cut(s) 98, 707, 842
XhoI CTCGAG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 3 cut(s) 165, 380, 546
ZrmI AGTACT 1 cut(s) 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.