Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014775

Physical Location & Seq

Genomic Coordinates Forward (+)

4895887 .. 4896291

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTGGGTGGGCCCCACAGGTATTGTGCAGGGATCGATCCTGGCCCACAGTGCAACTGGAGGGTTCTTGTCGCACTGCGGGTGGAACTCGAGCTTGGAGAGCTTGTGGCATGGCATCCCTATTGCGACGTGGCCCATGTATGCAGAGCAGCAGCTCAATGCTTTTAGGATGGTGAGGGAGTTGGGGATGGCGTTGGAGATGAGGCTGGATTACAAGAGAGGCAGCGCTGACGTGGTGGGGGCGGACGAGATTGAGAGGGCTGTGGTTGGTGTGATGGAGAAGGATAGTGAGGTGAGGAAGAAGGTGGAAAAGATGGGAAAGATGGCTAGAAAAGCTGTGAAGGATGGAGGGTCTTCATTTGCTTCTGTTGGGAGATTTATTGAGGATGTGATTGGTGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

135

Amino Acids

14.66

Weight (kDa)

6.3

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	10 - 62	8.3e-12	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39310 FvH4_6g39311 FvH4_6g39311
malus_domestica	MD09G1142000.v1.1 MD09G1143400.v1.1
prunus_persica	Prupe.3G184400_v2.0.a1
pyrus_communis	pycom09g06230 pycom11g06430
rosa_chinensis	RchiOBHm_Chr2g0153231
rosa_laevigata	RLG00000020687
rosa_multiflora	Rmu_sc0000442.1_g000004 Rmu_sc0000442.1_g000007
rosa_roxburghii	Rroxscaffold_2G00095080
rosa_rugosa	Rorug02G0437600
rosa_samantha	Rh2AG500600 Rh2CG486900
rosa_wichuraiana	Rw2G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	78, 242
AclWI	GGATC	2 cut(s)	31, 40
AfeI	AGCGCT	1 cut(s)	226
AjiI	CACGTC	2 cut(s)	129, 232
AjnI	CCWGG	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	4 cut(s)	93, 102, 154, 335
AluI	AGCT	4 cut(s)	93, 102, 154, 335
AlwI	GGATC	2 cut(s)	31, 40
Ama87I	CYCGRG	1 cut(s)	88
Aor51HI	AGCGCT	1 cut(s)	226
AoxI	GGCC	3 cut(s)	10, 42, 131
ApaI	GGGCCC	1 cut(s)	14
ApeKI	GCWGC	3 cut(s)	148, 151, 222
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	4 cut(s)	10, 11, 43, 132
AsuHPI	GGTGA	2 cut(s)	184, 304
AvaI	CYCGRG	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	160, 163, 234
BccI	CCATC	6 cut(s)	163, 181, 268, 307, 316, 338
BciT130I	CCWGG	1 cut(s)	41
BfaI	CTAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	3 cut(s)	149, 152, 223
BlsI	GCNGC	3 cut(s)	150, 153, 224
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	88
BmgBI	CACGTC	2 cut(s)	129, 232
BmgT120I	GGNCC	4 cut(s)	10, 11, 43, 132
BmiI	GGNNCC	2 cut(s)	12, 13
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	78
Bsa29I	ATCGAT	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	35
BseGI	GGATG	5 cut(s)	114, 174, 192, 349, 391
BseNI	ACTGG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	14
BseXI	GCAGC	3 cut(s)	160, 163, 234
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	3 cut(s)	12, 44, 133
BshVI	ATCGAT	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	88
BsnI	GGCC	3 cut(s)	12, 44, 133
BsoBI	CYCGRG	1 cut(s)	88
Bsp120I	GGGCCC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	32, 36
BspACI	CCGC	2 cut(s)	78, 242
BspANI	GGCC	3 cut(s)	12, 44, 133
BspDI	ATCGAT	1 cut(s)	35
BspLI	GGNNCC	2 cut(s)	12, 13
BspPI	GGATC	2 cut(s)	31, 40
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	2 cut(s)	32, 36
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	50
BstF5I	GGATG	5 cut(s)	114, 174, 192, 349, 391
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	35, 39
BstMBI	GATC	2 cut(s)	32, 36
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 99, 332
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	160, 163, 234
BstV2I	GAAGAC	1 cut(s)	345
Bsu15I	ATCGAT	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	12, 44, 133
BsuTUI	ATCGAT	1 cut(s)	35
BtrI	CACGTC	2 cut(s)	129, 232
BtsCI	GGATG	5 cut(s)	114, 174, 192, 349, 391
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	55, 73
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	4 cut(s)	10, 11, 43, 132
ClaI	ATCGAT	1 cut(s)	35
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	2 cut(s)	110, 136
DpnI	GATC	2 cut(s)	34, 38
DpnII	GATC	2 cut(s)	32, 36
EciI	GGCGGA	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	14
Eco47III	AGCGCT	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	14
FaeI	CATG	2 cut(s)	113, 139
FaiI	YATR	3 cut(s)	111, 137, 141
FatI	CATG	2 cut(s)	109, 135
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	3 cut(s)	149, 152, 223
FokI	GGATG	5 cut(s)	101, 181, 199, 356, 398
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	3 cut(s)	149, 152, 223
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	3 cut(s)	149, 152, 223
GsuI	CTGGAG	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	12, 44, 133
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	113, 139
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HphI	GGTGA	2 cut(s)	184, 304
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	274, 295, 334
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	2 cut(s)	128, 231
HpyCH4V	TGCA	3 cut(s)	28, 53, 143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 99, 332
HpySE526I	ACGT	2 cut(s)	128, 231
Hsp92II	CATG	2 cut(s)	113, 139
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	32, 36
LpnPI	CCDG	6 cut(s)	3, 14, 26, 42, 53, 191
Lsp1109I	GCAGC	3 cut(s)	160, 163, 234
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	2 cut(s)	128, 231
MalI	GATC	2 cut(s)	34, 38
MboI	GATC	2 cut(s)	32, 36
MboII	GAAGA	2 cut(s)	310, 345
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	9 cut(s)	53, 168, 195, 212, 249, 283, 288, 341, 376
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	50, 99, 332
NdeII	GATC	2 cut(s)	32, 36
NlaIII	CATG	2 cut(s)	113, 139
NlaIV	GGNNCC	2 cut(s)	12, 13
PaeR7I	CTCGAG	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	150, 153, 224
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	12, 13
PspOMI	GGGCCC	1 cut(s)	10
PspPI	GGNCC	4 cut(s)	10, 11, 43, 132
PspXI	VCTCGAGB	1 cut(s)	88
SatI	GCNGC	3 cut(s)	149, 152, 223
Sau3AI	GATC	2 cut(s)	32, 36
Sau96I	GGNCC	4 cut(s)	10, 11, 43, 132
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	9 cut(s)	22, 95, 104, 131, 156, 234, 294, 306, 337
SfaNI	GCATC	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	1 cut(s)	400
SsiI	CCGC	2 cut(s)	78, 242
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	2 cut(s)	131, 234
TaqI	TCGA	2 cut(s)	35, 89
TasI	AATT	1 cut(s)	400
TscAI	CASTG	2 cut(s)	55, 80
TseI	GCWGC	3 cut(s)	148, 151, 222
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	2 cut(s)	55, 80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	88
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.