Rh2CG486900

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014775
Physical Location & Seq
Reverse (-)
65315138 .. 65321584
6447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG486900.1

Sequence Viewer

Length: 1005 bp
ATGAAGAGAGCAGGGCTTGTGTTCGTCCCCACACCAGCTGTAGGTCATCTAGTATCCACAATCGAGTTCTCGAAACGTATGTTGAATCTAAGCGATCGATTCTCAGTAATAATTCTTGTAATGAAATCGCCATTTGGAGTCGCTGCGGATCAGTCAAACACTAGTCAGCCGGTTCCTGCAGCCTCCCACACCCACATAAAACTCATCCATCTTCCCACTGTAGATCCCCCAACCGAGTTTGAGTCTGTAGAGAAGTTCCTCGGTGATTACATAGACAAATACAAGAACCATGTCAAGGACACCATTATCAACCAGGTCTTACCTAACACGTCTCAAATTGCTGGAGTGATTGTTGACATGTTCTGCACTACCATGATTGACGTAGCCCATGAACTCAAGGTTCCATCATTTGTGTTCTTCACTTCTGGAGCAGCTTTTCTTGGTTTGTTGCTCTACCTTCAAAAACGGTACGACCAAGTTGGCAAAGTGTTTGAAGAATCGGATCCTGACTCGATTGTACCGAGTTATATCAACCCAGTGCCCACAAATGTAATGCCTGGATTTGCCTTCAACAATGGTGGATACATTTCATTTGCAAACCATGCTAGAAGGTTCAAGGAAACCAAGGGCATAATCATCAACACGTTGGTTGAGCTCGAATCCCATGCGGTTCACTCACTTTTTGATGGTTATGAAAATGAGCAAAGTCAAGCGCAGCCGCATGTTTACGCAGTTGGTCCCTTGGTTGATATCAAAGGTAAGTATGAAGTTCAGTCTAACCTTACCAAAGTTGACAAGATCATGAAATGGCTTGATGAGCAGTCTCCAAAATCAGTGGTGTTCCTCTGCTTTGGGAGCTTTGGGAGCTTTGATGAAACCCAATTGAAAGAGATGGCAATCGGGCTCGAGCAAAGTGGCCAGAGATTCTTGTGGTCTGTACGCCAAAACCCACCAAAAGGAACCATGGCAACGCCAGGACCTGAATATACATATACTAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

334

Amino Acids

37.22

Weight (kDa)

6.21

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014775)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g39310 FvH4_6g39311 FvH4_6g39311
malus_domestica MD09G1142000.v1.1 MD09G1143400.v1.1
prunus_persica Prupe.3G184400_v2.0.a1
pyrus_communis pycom09g06230 pycom11g06430
rosa_chinensis RchiOBHm_Chr2g0153231
rosa_laevigata RLG00000020687
rosa_multiflora Rmu_sc0000442.1_g000004 Rmu_sc0000442.1_g000007
rosa_roxburghii Rroxscaffold_2G00095080
rosa_rugosa Rorug02G0437600
rosa_samantha Rh2AG500600 Rh2CG486900
rosa_wichuraiana Rw2G041090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 146, 668, 719
AclWI GGATC 4 cut(s) 156, 218, 497, 510
AcoI YGGCCR 1 cut(s) 916
AfaI GTAC 3 cut(s) 470, 519, 939
AfiI CCNNNNNNNGG 3 cut(s) 41, 295, 956
AflIII ACRYGT 3 cut(s) 327, 357, 642
AgsI TTSAA 6 cut(s) 85, 461, 494, 571, 616, 886
AhlI ACTAGT 1 cut(s) 161
AjiI CACGTC 1 cut(s) 330
AjnI CCWGG 3 cut(s) 312, 556, 973
AluBI AGCT 5 cut(s) 38, 434, 655, 858, 867
AluI AGCT 5 cut(s) 38, 434, 655, 858, 867
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 2 cut(s) 336, 828
AlwI GGATC 4 cut(s) 156, 218, 497, 510
AlwNI CAGNNNCTG 1 cut(s) 980
Ama87I CYCGRG 1 cut(s) 905
AoxI GGCC 1 cut(s) 916
ApeKI GCWGC 4 cut(s) 143, 179, 431, 715
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 2 cut(s) 737, 977
AsuHPI GGTGA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 905
AvaII GGWCC 2 cut(s) 737, 977
BaeGI GKGCMC 1 cut(s) 543
BalI TGGCCA 1 cut(s) 918
BamHI GGATCC 1 cut(s) 502
BanII GRGCYC 2 cut(s) 657, 906
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 4 cut(s) 130, 191, 443, 727
BccI CCATC 4 cut(s) 216, 412, 680, 886
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 3 cut(s) 314, 558, 975
BciVI GTATCC 2 cut(s) 64, 575
BcoDI GTCTC 2 cut(s) 336, 828
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 4 cut(s) 50, 162, 606, 996
BfmI CTRYAG 4 cut(s) 39, 177, 219, 246
BfuI GTATCC 2 cut(s) 64, 575
BisI GCNGC 5 cut(s) 144, 180, 432, 716, 719
BlsI GCNGC 5 cut(s) 145, 181, 433, 717, 720
Bme1390I CCNGG 3 cut(s) 314, 558, 975
Bme18I GGWCC 2 cut(s) 737, 977
BmeT110I CYCGRG 1 cut(s) 905
BmgBI CACGTC 1 cut(s) 330
BmgT120I GGNCC 2 cut(s) 737, 977
BmiI GGNNCC 5 cut(s) 174, 402, 504, 739, 961
BmrFI CCNGG 3 cut(s) 314, 558, 975
BmrI ACTGGG 1 cut(s) 530
BmuI ACTGGG 1 cut(s) 530
BpmI CTGGAG 2 cut(s) 363, 447
BpuEI CTTGAG 1 cut(s) 380
Bsa29I ATCGAT 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 896
BsaJI CCNNGG 4 cut(s) 259, 624, 741, 963
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 295, 956
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 536
Bse8I GATNNNNATC 1 cut(s) 896
BseBI CCWGG 3 cut(s) 314, 558, 975
BseCI ATCGAT 1 cut(s) 97
BseDI CCNNGG 4 cut(s) 259, 624, 741, 963
BseGI GGATG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 896
BseLI CCNNNNNNNGG 3 cut(s) 41, 295, 956
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 536
BseSI GKGCMC 1 cut(s) 543
BseXI GCAGC 4 cut(s) 130, 191, 443, 727
BsgI GTGCAG 1 cut(s) 349
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 918
BshVI ATCGAT 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 657
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 2 cut(s) 11, 723
BslI CCNNNNNNNGG 3 cut(s) 41, 295, 956
BsmAI GTCTC 2 cut(s) 336, 828
BsmBI CGTCTC 1 cut(s) 336
BsmFI GGGAC 2 cut(s) 11, 723
BsnI GGCC 1 cut(s) 918
BsoBI CYCGRG 1 cut(s) 905
Bsp1286I GDGCHC 3 cut(s) 543, 657, 906
Bsp143I GATC 5 cut(s) 94, 148, 223, 502, 798
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 3 cut(s) 146, 668, 719
BspANI GGCC 1 cut(s) 918
BspCNI CTCAG 1 cut(s) 116
BspDI ATCGAT 1 cut(s) 97
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 5 cut(s) 174, 402, 504, 739, 961
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 4 cut(s) 156, 218, 497, 510
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 4 cut(s) 259, 624, 741, 963
BssMI GATC 5 cut(s) 94, 148, 223, 502, 798
BssT1I CCWWGG 3 cut(s) 624, 741, 963
Bst2UI CCWGG 3 cut(s) 314, 558, 975
Bst4CI ACNGT 2 cut(s) 220, 468
BstAPI GCANNNNNTGC 1 cut(s) 602
BstDEI CTNAG 2 cut(s) 89, 103
BstDSI CCRYGG 1 cut(s) 963
BstF5I GGATG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 5 cut(s) 97, 151, 226, 505, 801
BstMAI GTCTC 2 cut(s) 336, 828
BstMBI GATC 5 cut(s) 94, 148, 223, 502, 798
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 4 cut(s) 602, 817, 855, 864
BstNI CCWGG 3 cut(s) 314, 558, 975
BstNSI RCATGY 2 cut(s) 361, 725
BstSCI CCNGG 3 cut(s) 312, 556, 973
BstSFI CTRYAG 4 cut(s) 39, 177, 219, 246
BstSLI GKGCMC 1 cut(s) 543
BstV1I GCAGC 4 cut(s) 130, 191, 443, 727
BstX2I RGATCY 2 cut(s) 223, 502
BstYI RGATCY 2 cut(s) 223, 502
Bsu15I ATCGAT 1 cut(s) 97
BsuI GTATCC 2 cut(s) 64, 575
BsuRI GGCC 1 cut(s) 918
BsuTUI ATCGAT 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 963
BtrI CACGTC 1 cut(s) 330
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 216, 543, 840
CaiI CAGNNNCTG 1 cut(s) 980
CciI TCATGA 1 cut(s) 801
CfoI GCGC 1 cut(s) 715
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 737, 977
ClaI ATCGAT 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 312
Csp6I GTAC 3 cut(s) 469, 518, 938
CspCI CAANNNNNGTGG 4 cut(s) 559, 594, 816, 851
CviAII CATG 9 cut(s) 290, 358, 373, 389, 602, 665, 722, 802, 964
CviQI GTAC 3 cut(s) 469, 518, 938
DdeI CTNAG 2 cut(s) 89, 103
DpnI GATC 5 cut(s) 96, 150, 225, 504, 800
DpnII GATC 5 cut(s) 94, 148, 223, 502, 798
EaeI YGGCCR 1 cut(s) 916
Ecl136II GAGCTC 1 cut(s) 655
Eco130I CCWWGG 3 cut(s) 624, 741, 963
Eco24I GRGCYC 2 cut(s) 657, 906
Eco32I GATATC 1 cut(s) 751
Eco47I GGWCC 2 cut(s) 737, 977
Eco53kI GAGCTC 1 cut(s) 655
Eco88I CYCGRG 1 cut(s) 905
EcoICRI GAGCTC 1 cut(s) 655
EcoO109I RGGNCCY 1 cut(s) 977
EcoRII CCWGG 3 cut(s) 312, 556, 973
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 3 cut(s) 624, 741, 963
EcoT38I GRGCYC 2 cut(s) 657, 906
ErhI CCWWGG 3 cut(s) 624, 741, 963
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 9 cut(s) 293, 361, 376, 392, 605, 668, 725, 805, 967
FaqI GGGAC 2 cut(s) 11, 723
FatI CATG 9 cut(s) 289, 357, 372, 388, 601, 664, 721, 801, 963
Fnu4HI GCNGC 5 cut(s) 144, 180, 432, 716, 719
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 2 cut(s) 657, 906
Fsp4HI GCNGC 5 cut(s) 144, 180, 432, 716, 719
FspBI CTAG 4 cut(s) 50, 162, 606, 996
GlaI GCGC 1 cut(s) 714
GluI GCNGC 5 cut(s) 144, 180, 432, 716, 719
GsuI CTGGAG 2 cut(s) 363, 447
HaeIII GGCC 1 cut(s) 918
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 715
Hin1II CATG 9 cut(s) 293, 361, 376, 392, 605, 668, 725, 805, 967
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HincII GTYRAC 2 cut(s) 355, 793
HindII GTYRAC 2 cut(s) 355, 793
HinfI GANTC 8 cut(s) 85, 99, 138, 242, 497, 509, 659, 924
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 4 cut(s) 355, 673, 727, 793
Hpy188I TCNGA 1 cut(s) 502
Hpy188III TCNNGA 4 cut(s) 70, 426, 506, 802
Hpy8I GTNNAC 4 cut(s) 355, 673, 727, 793
HpyAV CCTTC 3 cut(s) 467, 577, 603
HpyCH4III ACNGT 2 cut(s) 220, 468
HpyCH4IV ACGT 4 cut(s) 76, 329, 381, 644
HpyCH4V TGCA 3 cut(s) 179, 366, 596
HpyF10VI GCNNNNNNNGC 4 cut(s) 602, 817, 855, 864
HpyF3I CTNAG 2 cut(s) 89, 103
HpySE526I ACGT 4 cut(s) 76, 329, 381, 644
Hsp92II CATG 9 cut(s) 293, 361, 376, 392, 605, 668, 725, 805, 967
HspAI GCGC 1 cut(s) 713
Kzo9I GATC 5 cut(s) 94, 148, 223, 502, 798
LmnI GCTCC 3 cut(s) 428, 855, 864
Lsp1109I GCAGC 4 cut(s) 130, 191, 443, 727
MabI ACCWGGT 1 cut(s) 312
MaeI CTAG 4 cut(s) 50, 162, 606, 996
MaeII ACGT 4 cut(s) 76, 329, 381, 644
MalI GATC 5 cut(s) 96, 150, 225, 504, 800
MboI GATC 5 cut(s) 94, 148, 223, 502, 798
MboII GAAGA 4 cut(s) 16, 203, 409, 506
MfeI CAATTG 1 cut(s) 881
MflI RGATCY 2 cut(s) 223, 502
MhlI GDGCHC 3 cut(s) 543, 657, 906
MlsI TGGCCA 1 cut(s) 918
MluCI AATT 3 cut(s) 111, 336, 881
MluNI TGGCCA 1 cut(s) 918
MlyI GAGTC 3 cut(s) 147, 251, 503
MnlI CCTC 3 cut(s) 193, 269, 854
Mox20I TGGCCA 1 cut(s) 918
MscI TGGCCA 1 cut(s) 918
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 3 cut(s) 314, 558, 975
MunI CAATTG 1 cut(s) 881
MvaI CCWGG 3 cut(s) 314, 558, 975
MwoI GCNNNNNNNGC 4 cut(s) 602, 817, 855, 864
NcoI CCATGG 1 cut(s) 963
NdeII GATC 5 cut(s) 94, 148, 223, 502, 798
NlaIII CATG 9 cut(s) 293, 361, 376, 392, 605, 668, 725, 805, 967
NlaIV GGNNCC 5 cut(s) 174, 402, 504, 739, 961
NspI RCATGY 2 cut(s) 361, 725
PaeR7I CTCGAG 1 cut(s) 905
PagI TCATGA 1 cut(s) 801
PciI ACATGT 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 518
PfeI GAWTC 5 cut(s) 85, 99, 497, 659, 924
PkrI GCNGC 5 cut(s) 145, 181, 433, 717, 720
Ple19I CGATCG 1 cut(s) 97
PleI GAGTC 3 cut(s) 146, 250, 503
PpsI GAGTC 3 cut(s) 146, 250, 503
PpuMI RGGWCCY 1 cut(s) 977
PscI ACATGT 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 657
Psp5II RGGWCCY 1 cut(s) 977
Psp6I CCWGG 3 cut(s) 312, 556, 973
PspGI CCWGG 3 cut(s) 312, 556, 973
PspN4I GGNNCC 5 cut(s) 174, 402, 504, 739, 961
PspPI GGNCC 2 cut(s) 737, 977
PspPPI RGGWCCY 1 cut(s) 977
PspXI VCTCGAGB 1 cut(s) 905
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 2 cut(s) 223, 502
PvuI CGATCG 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 3 cut(s) 470, 519, 939
RsaNI GTAC 3 cut(s) 469, 518, 938
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 657
SatI GCNGC 5 cut(s) 144, 180, 432, 716, 719
Sau3AI GATC 5 cut(s) 94, 148, 223, 502, 798
Sau96I GGNCC 2 cut(s) 737, 977
SchI GAGTC 3 cut(s) 147, 251, 503
ScrFI CCNGG 3 cut(s) 314, 558, 975
SduI GDGCHC 3 cut(s) 543, 657, 906
SexAI ACCWGGT 1 cut(s) 312
SfcI CTRYAG 4 cut(s) 39, 177, 219, 246
Sfr274I CTCGAG 1 cut(s) 905
SinI GGWCC 2 cut(s) 737, 977
SlaI CTCGAG 1 cut(s) 905
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 395, 905
SmoI CTYRAG 2 cut(s) 395, 905
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 3 cut(s) 111, 336, 881
SsiI CCGC 3 cut(s) 146, 668, 719
SspMI CTAG 4 cut(s) 50, 162, 606, 996
SstI GAGCTC 1 cut(s) 657
StyD4I CCNGG 3 cut(s) 312, 556, 973
StyI CCWWGG 3 cut(s) 624, 741, 963
TaaI ACNGT 2 cut(s) 220, 468
TaiI ACGT 4 cut(s) 79, 332, 384, 647
TaqI TCGA 6 cut(s) 63, 71, 97, 512, 657, 906
TasI AATT 3 cut(s) 111, 336, 881
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 5 cut(s) 85, 99, 497, 659, 924
TscAI CASTG 3 cut(s) 223, 543, 840
TseI GCWGC 4 cut(s) 143, 179, 431, 715
TspDTI ATGAA 8 cut(s) 17, 137, 405, 579, 708, 780, 818, 888
TspRI CASTG 3 cut(s) 223, 543, 840
VpaK11BI GGWCC 2 cut(s) 737, 977
XceI RCATGY 2 cut(s) 361, 725
XhoI CTCGAG 1 cut(s) 905
XspI CTAG 4 cut(s) 50, 162, 606, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.