Rorug02G0437600

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014460
Physical Location & Seq
Reverse (-)
55926835 .. 55928902
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0437600.1

Sequence Viewer

Length: 1149 bp
ATGGCAAGTCTTAGCTACATTGTTTATGTGTTGGCAAGCCTACTCAACCCAGTTAGCTTCCTTCTTTATGGTCATCATAGTCGGTATACTGGTAGTAGTAATAGTAGTATAGAACATGATGATCAATATAAGGTGGCATTGTTTGTGTTCGGAGACTCGCTATTTGAGGCTGGCAACAATGGGTACCTTCCTAATGTTACCACAGAGCTAGACGCAGCAATAGCCTGGCCATATGGAGAAACCTTCTTCCACTATCCCACCGGAAGATTCTCCGACGGACGCATAGTCCCCGATTTCATCGCTAAGTACGCAAAGCTGCCCATGCTTCCACCTTACCTGCAACCAGGTCCACATGATTTTACCGATGGATGCAACTTTGCTTCGTCTGGAGCCGGGGTTCTTGTTGAAACTAATCCAGGAAAATCGATAAGTCTTCCAGCACAGTTGGGCTTCTTCAAAGATGTCAGAAAGTCGCTACAACAGAAACTGGGTGGTCTAAAAACCAAACGCGTGCTCAGGGAAGCTGTTTACTTGATTGGCATCGGAGGGGATGATTATTTTCACTTCTACAGCGACTTTCCAAATGCCACCGAGTCCCTTCAACTCGAAGCCGTAGCAGTTGTGATTGGCAACTTGAGCATCATACTCCAAGAAATATATGATTTAGGAGGAAGGAAGTTTGCATTTCAAAATGCAGGACCGCTTGGATGCATACCTTATAGGAGACAAATTTACAATAGTAAGGAAGGATGCGTTGAAGGACTCAATAGTCTGGCTAGTCTACATAACACAGCTCTAATTTCTGTCCTTAAAGAGTTCGAGAGCGAACTATTAGGATTCAAATATTCAATATTTGACTACTATAATTCACTTGATGATCGACTCCGTAACCCTGCCAAATATGGGTTCACAAATGCGACAGATGCATGTTGTGGTACAGGGCTGTTCAGAGCAGCTTATTGTGGTGGAGATAATGGAACAAAACCATATGAACTATGCAATGACGTTGGAGATTATTTGTGGTTTGATGGTAGCCATACGACTGAAATTGCAAACATCCCAATGGCAGAGCTGATATGGAGTGGAACACCCAATGTCACAGGGCCTTACAATGTCAAGCAACTTTTCCAACAAGTTTCAGCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

382

Amino Acids

42.13

Weight (kDa)

5.28

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 47 - 359 1.4e-30 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15140
fragaria_vesca FvH4_6g39300
malus_domestica MD09G1143500.v1.1 MD17G1129800.v1.1
prunus_persica Prupe.3G184300_v2.0.a1
pyrus_communis pycom09g06300 pycom17g12240
rosa_chinensis RchiOBHm_Chr2g0153221 RchiOBHm_Chr3g0480451
rosa_multiflora Rmu_sc0000442.1_g000003
rosa_roxburghii Rroxscaffold_2G00095090 Rroxscaffold_5G00335020
rosa_rugosa Rorug02G0437600
rosa_samantha Rh2BG512100 Rh2CG486800 Rh4CG218900
rosa_wichuraiana Rw2G041080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 768
Acc36I ACCTGC 1 cut(s) 345
Acc65I GGTACC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 183
AccI GTMKAC 2 cut(s) 86, 781
AccII CGCG 1 cut(s) 510
AciI CCGC 1 cut(s) 701
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 1 cut(s) 729
AfaI GTAC 3 cut(s) 185, 308, 937
AfiI CCNNNNNNNGG 1 cut(s) 903
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 7 cut(s) 407, 457, 602, 689, 758, 841, 849
AhdI GACNNNNNGTC 1 cut(s) 284
AjnI CCWGG 3 cut(s) 224, 343, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 890, 922
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 9 cut(s) 15, 57, 208, 316, 524, 794, 956, 1072, 1142
AluI AGCT 9 cut(s) 15, 57, 208, 316, 524, 794, 956, 1072, 1142
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 2 cut(s) 147, 718
AlwNI CAGNNNCTG 1 cut(s) 487
AoxI GGCC 2 cut(s) 227, 1103
ApeKI GCWGC 3 cut(s) 215, 316, 953
ApoI RAATTY 1 cut(s) 729
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp718I GGTACC 1 cut(s) 183
AspS9I GGNCC 3 cut(s) 347, 698, 1103
AsuC2I CCSGG 1 cut(s) 394
AvaII GGWCC 2 cut(s) 347, 698
BalI TGGCCA 1 cut(s) 229
BanI GGYRCC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 3 cut(s) 227, 303, 965
BccI CCATC 2 cut(s) 359, 1022
BceAI ACGGC 1 cut(s) 596
BciT130I CCWGG 3 cut(s) 226, 345, 417
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 147, 718
BfaI CTAG 2 cut(s) 209, 777
BfmI CTRYAG 1 cut(s) 568
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 3 cut(s) 216, 317, 954
BlsI GCNGC 3 cut(s) 217, 318, 955
Bme1390I CCNGG 4 cut(s) 226, 345, 394, 417
Bme18I GGWCC 2 cut(s) 347, 698
BmeRI GACNNNNNGTC 1 cut(s) 284
BmgT120I GGNCC 3 cut(s) 347, 698, 1103
BmiI GGNNCC 2 cut(s) 185, 391
BmrFI CCNGG 4 cut(s) 226, 345, 394, 417
BmrI ACTGGG 2 cut(s) 44, 497
BmsI GCATC 6 cut(s) 359, 549, 648, 698, 740, 913
BmuI ACTGGG 2 cut(s) 44, 497
BpiI GAAGAC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 655
BpuMI CCSGG 1 cut(s) 394
Bsa29I ATCGAT 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 903
Bse1I ACTGG 3 cut(s) 50, 94, 492
Bse3DI GCAATG 1 cut(s) 1006
Bse8I GATNNNNATC 1 cut(s) 539
BseBI CCWGG 3 cut(s) 226, 345, 417
BseCI ATCGAT 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 5 cut(s) 374, 556, 713, 755, 1056
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 1 cut(s) 903
BseMI GCAATG 1 cut(s) 1006
BseMII CTCAG 1 cut(s) 529
BseNI ACTGG 3 cut(s) 50, 94, 492
BseXI GCAGC 3 cut(s) 227, 303, 965
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 2 cut(s) 229, 1105
BshNI GGYRCC 1 cut(s) 183
BshVI ATCGAT 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 2 cut(s) 261, 393
BslFI GGGAC 2 cut(s) 272, 580
BslI CCNNNNNNNGG 1 cut(s) 903
BsmAI GTCTC 2 cut(s) 147, 718
BsmFI GGGAC 2 cut(s) 272, 580
BsnI GGCC 2 cut(s) 229, 1105
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 2 cut(s) 121, 877
BspACI CCGC 1 cut(s) 701
BspANI GGCC 2 cut(s) 229, 1105
BspCNI CTCAG 1 cut(s) 528
BspDI ATCGAT 1 cut(s) 425
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 185, 391
BspMI ACCTGC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 1006
BsrI ACTGG 3 cut(s) 50, 94, 492
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 2 cut(s) 121, 877
BssNAI GTATAC 1 cut(s) 87
Bst1107I GTATAC 1 cut(s) 87
Bst2UI CCWGG 3 cut(s) 226, 345, 417
Bst4CI ACNGT 1 cut(s) 444
BstC8I GCNNGC 3 cut(s) 37, 172, 512
BstDEI CTNAG 3 cut(s) 11, 303, 515
BstF5I GGATG 5 cut(s) 374, 556, 713, 755, 1056
BstFNI CGCG 1 cut(s) 510
BstKTI GATC 2 cut(s) 124, 880
BstMAI GTCTC 2 cut(s) 147, 718
BstMBI GATC 2 cut(s) 121, 877
BstMWI GCNNNNNNNGC 5 cut(s) 221, 308, 322, 636, 923
BstNI CCWGG 3 cut(s) 226, 345, 417
BstNSI RCATGY 1 cut(s) 930
BstSCI CCNGG 4 cut(s) 224, 343, 392, 415
BstSFI CTRYAG 1 cut(s) 568
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 227, 303, 965
BstV2I GAAGAC 1 cut(s) 425
BstZ17I GTATAC 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 425
BsuRI GGCC 2 cut(s) 229, 1105
BsuTUI ATCGAT 1 cut(s) 425
BtgZI GCGATG 1 cut(s) 283
BtsCI GGATG 5 cut(s) 374, 556, 713, 755, 1056
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 3 cut(s) 37, 172, 512
CaiI CAGNNNCTG 1 cut(s) 487
Cfr13I GGNCC 3 cut(s) 347, 698, 1103
ClaI ATCGAT 1 cut(s) 425
CseI GACGC 2 cut(s) 221, 288
CsiI ACCWGGT 1 cut(s) 343
Csp6I GTAC 3 cut(s) 184, 307, 936
CviAII CATG 4 cut(s) 116, 322, 353, 927
CviQI GTAC 3 cut(s) 184, 307, 936
DdeI CTNAG 3 cut(s) 11, 303, 515
DpnI GATC 2 cut(s) 123, 879
DpnII GATC 2 cut(s) 121, 877
DrdI GACNNNNNNGTC 1 cut(s) 768
DriI GACNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 768
EaeI YGGCCR 1 cut(s) 227
Eam1105I GACNNNNNGTC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 347, 698
EcoO109I RGGNCCY 1 cut(s) 1103
EcoRII CCWGG 3 cut(s) 224, 343, 415
EcoT22I ATGCAT 2 cut(s) 713, 928
FaeI CATG 4 cut(s) 119, 325, 356, 930
FaqI GGGAC 2 cut(s) 272, 580
FatI CATG 4 cut(s) 115, 321, 352, 926
FauNDI CATATG 2 cut(s) 232, 988
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 2 cut(s) 86, 781
Fnu4HI GCNGC 3 cut(s) 216, 317, 954
FokI GGATG 5 cut(s) 381, 563, 720, 762, 1043
Fsp4HI GCNGC 3 cut(s) 216, 317, 954
FspBI CTAG 2 cut(s) 209, 777
GluI GCNGC 3 cut(s) 216, 317, 954
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 2 cut(s) 229, 1105
HapII CCGG 2 cut(s) 261, 393
HgaI GACGC 2 cut(s) 221, 288
Hin1II CATG 4 cut(s) 119, 325, 356, 930
HinfI GANTC 6 cut(s) 155, 267, 593, 762, 837, 882
HpaII CCGG 2 cut(s) 261, 393
Hpy166II GTNNAC 5 cut(s) 87, 350, 529, 782, 909
Hpy188I TCNGA 5 cut(s) 152, 274, 467, 545, 950
Hpy188III TCNNGA 2 cut(s) 387, 820
Hpy8I GTNNAC 5 cut(s) 87, 350, 529, 782, 909
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 7 cut(s) 71, 197, 253, 608, 666, 740, 752
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4IV ACGT 1 cut(s) 1005
HpyCH4V TGCA 8 cut(s) 340, 372, 683, 695, 711, 926, 999, 1052
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 308, 322, 636, 923
HpyF3I CTNAG 3 cut(s) 11, 303, 515
HpySE526I ACGT 1 cut(s) 1005
Hsp92II CATG 4 cut(s) 119, 325, 356, 930
KpnI GGTACC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 121, 877
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 3 cut(s) 227, 303, 965
LweI GCATC 6 cut(s) 359, 549, 648, 698, 740, 913
MabI ACCWGGT 1 cut(s) 343
MaeI CTAG 2 cut(s) 209, 777
MaeII ACGT 1 cut(s) 1005
MaeIII GTNAC 3 cut(s) 196, 887, 1096
MalI GATC 2 cut(s) 123, 879
MboI GATC 2 cut(s) 121, 877
MboII GAAGA 4 cut(s) 238, 276, 425, 445
MhlI GDGCHC 1 cut(s) 516
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 4 cut(s) 729, 798, 865, 1047
MluI ACGCGT 1 cut(s) 508
MluNI TGGCCA 1 cut(s) 229
MlyI GAGTC 4 cut(s) 149, 602, 756, 876
MmeI TCCRAC 2 cut(s) 297, 988
MnlI CCTC 3 cut(s) 160, 539, 662
Mox20I TGGCCA 1 cut(s) 229
Mph1103I ATGCAT 2 cut(s) 713, 928
MscI TGGCCA 1 cut(s) 229
MseI TTAA 2 cut(s) 810, 1147
MslI CAYNNNNRTG 1 cut(s) 1061
Msp20I TGGCCA 1 cut(s) 229
MspI CCGG 2 cut(s) 261, 393
MspR9I CCNGG 4 cut(s) 226, 345, 394, 417
MvaI CCWGG 3 cut(s) 226, 345, 417
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 5 cut(s) 221, 308, 322, 636, 923
NciI CCSGG 1 cut(s) 394
NdeI CATATG 2 cut(s) 232, 988
NdeII GATC 2 cut(s) 121, 877
NlaIII CATG 4 cut(s) 119, 325, 356, 930
NlaIV GGNNCC 2 cut(s) 185, 391
NmuCI GTSAC 1 cut(s) 1096
NsiI ATGCAT 2 cut(s) 713, 928
NspI RCATGY 1 cut(s) 930
PfeI GAWTC 2 cut(s) 267, 837
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 3 cut(s) 217, 318, 955
PleI GAGTC 4 cut(s) 149, 601, 756, 876
PpsI GAGTC 4 cut(s) 149, 601, 756, 876
Psp6I CCWGG 3 cut(s) 224, 343, 415
PspGI CCWGG 3 cut(s) 224, 343, 415
PspN4I GGNNCC 2 cut(s) 185, 391
PspPI GGNCC 3 cut(s) 347, 698, 1103
PstNI CAGNNNCTG 1 cut(s) 487
RsaI GTAC 3 cut(s) 185, 308, 937
RsaNI GTAC 3 cut(s) 184, 307, 936
RseI CAYNNNNRTG 1 cut(s) 1061
SaqAI TTAA 2 cut(s) 810, 1147
SatI GCNGC 3 cut(s) 216, 317, 954
Sau3AI GATC 2 cut(s) 121, 877
Sau96I GGNCC 3 cut(s) 347, 698, 1103
SchI GAGTC 4 cut(s) 149, 602, 756, 876
ScrFI CCNGG 4 cut(s) 226, 345, 394, 417
SduI GDGCHC 1 cut(s) 516
SexAI ACCWGGT 1 cut(s) 343
SfaNI GCATC 6 cut(s) 359, 549, 648, 698, 740, 913
SfcI CTRYAG 1 cut(s) 568
SinI GGWCC 2 cut(s) 347, 698
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 1 cut(s) 634
SmoI CTYRAG 1 cut(s) 634
Sse9I AATT 4 cut(s) 729, 798, 865, 1047
SsiI CCGC 1 cut(s) 701
SspI AATATT 2 cut(s) 845, 852
SspMI CTAG 2 cut(s) 209, 777
StyD4I CCNGG 4 cut(s) 224, 343, 392, 415
TaaI ACNGT 1 cut(s) 444
TaiI ACGT 1 cut(s) 1008
TaqI TCGA 4 cut(s) 425, 606, 819, 880
TasI AATT 4 cut(s) 729, 798, 865, 1047
TfiI GAWTC 2 cut(s) 267, 837
Tru1I TTAA 2 cut(s) 810, 1147
Tru9I TTAA 2 cut(s) 810, 1147
TseFI GTSAC 1 cut(s) 1096
TseI GCWGC 3 cut(s) 215, 316, 953
Tsp45I GTSAC 1 cut(s) 1096
TspDTI ATGAA 2 cut(s) 286, 1005
TspGWI ACGGA 2 cut(s) 291, 875
VpaK11BI GGWCC 2 cut(s) 347, 698
XapI RAATTY 1 cut(s) 729
XceI RCATGY 1 cut(s) 930
XmiI GTMKAC 2 cut(s) 86, 781
XspI CTAG 2 cut(s) 209, 777
Zsp2I ATGCAT 2 cut(s) 713, 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.