FvH4_6g39300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014460
Physical Location & Seq
Forward (+)
31055216 .. 31056868
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39300.t1

Sequence Viewer

Length: 600 bp
ATGGCACTAGAAGAAGCAGATTCACTACTCACTTCAGTGAAACTCCAACACCAACAAGAACAAAGAGAGAGGCTCATTGTAGTGAGTGGTCCTTGCAAGGTGATCGAGTATTTGCAGCCAGTAATGTCAAAGGAGCTTCTCTGCAAGTTCCCAGACAACTCTGCCTTCGACTTCGACTACACGAAGAGCTCGATATGGTCTCCGCTGGTCCCCCGGGCTTACGCTCCGATGGATTTGGACTTCGATTTCGATTTCATGACCCCAAAAAAGCTGGCATTTGATCAAGTGGAGTTGGAGTGCAACAATCAAAGTAGCAGCATCAAGAAAGTGGGTTCTAGTGGTAAGAAGAAGACTTGCACTGCTGGGTTTAATCTCGACTTGAGTGCATTGAAGATCAAGAAGTGGAGAGGGAAGAAGAAGAAGATGGCATTGGTACCTGATTTCTCTCCAACTCCTTTAAAGGATAATTGTTACCCCATTGCCTCAAAGGTATGGAATAAGGTGCTGAAAGCTGCCTCTAAGCACTTCAAGAAGAAGAAGAGAGATCCAATGGCTCATGTGAGGCTCACCAATTATATCAAAGAGGGAGGAAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.64

Weight (kDa)

9.55

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15140
fragaria_vesca FvH4_6g39300
malus_domestica MD09G1143500.v1.1 MD17G1129800.v1.1
prunus_persica Prupe.3G184300_v2.0.a1
pyrus_communis pycom09g06300 pycom17g12240
rosa_chinensis RchiOBHm_Chr2g0153221 RchiOBHm_Chr3g0480451
rosa_multiflora Rmu_sc0000442.1_g000003
rosa_roxburghii Rroxscaffold_2G00095090 Rroxscaffold_5G00335020
rosa_rugosa Rorug02G0437600
rosa_samantha Rh2BG512100 Rh2CG486800 Rh4CG218900
rosa_wichuraiana Rw2G041080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 433
AciI CCGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 539
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 1 cut(s) 435
AgsI TTSAA 2 cut(s) 391, 529
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 4 cut(s) 136, 189, 271, 512
AluI AGCT 4 cut(s) 136, 189, 271, 512
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 1 cut(s) 539
Ama87I CYCGRG 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 115, 315, 512
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
Asp718I GGTACC 1 cut(s) 433
AspS9I GGNCC 2 cut(s) 89, 208
AsuC2I CCSGG 2 cut(s) 214, 215
AsuHPI GGTGA 2 cut(s) 112, 559
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 2 cut(s) 89, 208
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 3 cut(s) 127, 327, 499
BccI CCATC 2 cut(s) 223, 418
BcgI CGANNNNNNTGC 4 cut(s) 85, 119, 365, 399
BclI TGATCA 1 cut(s) 280
BcnI CCSGG 2 cut(s) 214, 215
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 2 cut(s) 8, 336
BisI GCNGC 3 cut(s) 116, 316, 513
BlsI GCNGC 3 cut(s) 117, 317, 514
Bme1390I CCNGG 2 cut(s) 214, 215
Bme18I GGWCC 2 cut(s) 89, 208
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 89, 208
BmiI GGNNCC 2 cut(s) 210, 435
BmrFI CCNGG 2 cut(s) 214, 215
BmsI GCATC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 356
BplI GAGNNNNNCTC 2 cut(s) 57, 89
BpuEI CTTGAG 1 cut(s) 400
BpuMI CCSGG 2 cut(s) 214, 215
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 212, 213
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 212, 213
BseMI GCAATG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 127, 327, 499
BseYI CCCAGC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 4 cut(s) 102, 280, 393, 544
BspACI CCGC 1 cut(s) 203
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 210, 435
BspPI GGATC 1 cut(s) 539
BspQI GCTCTTC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 477
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 212, 213
BssMI GATC 4 cut(s) 102, 280, 393, 544
Bst6I CTCTTC 2 cut(s) 179, 533
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 519
BstKTI GATC 4 cut(s) 105, 283, 396, 547
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 4 cut(s) 102, 280, 393, 544
BstSCI CCNGG 2 cut(s) 212, 213
BstV1I GCAGC 3 cut(s) 127, 327, 499
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 42, 357
Cac8I GCNNGC 1 cut(s) 273
CciI TCATGA 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 89, 208
Cfr9I CCCGGG 1 cut(s) 213
Csp6I GTAC 1 cut(s) 434
CviAII CATG 2 cut(s) 256, 557
CviJI RGCY 9 cut(s) 73, 118, 136, 189, 218, 271, 512, 554, 565
CviKI_1 RGCY 9 cut(s) 73, 118, 136, 189, 218, 271, 512, 554, 565
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 1 cut(s) 519
DpnI GATC 4 cut(s) 104, 282, 395, 546
DpnII GATC 4 cut(s) 102, 280, 393, 544
DraI TTTAAA 1 cut(s) 459
Eam1104I CTCTTC 2 cut(s) 179, 533
EarI CTCTTC 2 cut(s) 179, 533
Ecl136II GAGCTC 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 191
Eco31I GGTCTC 1 cut(s) 204
Eco47I GGWCC 2 cut(s) 89, 208
Eco53kI GAGCTC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 2 cut(s) 259, 560
FaiI YATR 5 cut(s) 196, 257, 493, 558, 576
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 255, 556
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 116, 316, 513
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 3 cut(s) 116, 316, 513
FspBI CTAG 2 cut(s) 8, 336
GluI GCNGC 3 cut(s) 116, 316, 513
GsaI CCCAGC 1 cut(s) 366
HapII CCGG 1 cut(s) 214
Hin1II CATG 2 cut(s) 259, 560
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 214
HphI GGTGA 2 cut(s) 112, 559
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 5 cut(s) 256, 322, 374, 397, 529
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 6 cut(s) 96, 115, 144, 300, 357, 386
HpyF3I CTNAG 1 cut(s) 519
Hsp92II CATG 2 cut(s) 259, 560
KpnI GGTACC 1 cut(s) 437
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 4 cut(s) 102, 280, 393, 544
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 2 cut(s) 133, 229
LpnPI CCDG 7 cut(s) 132, 165, 191, 227, 257, 348, 450
Lsp1109I GCAGC 3 cut(s) 127, 327, 499
LweI GCATC 1 cut(s) 327
MaeI CTAG 2 cut(s) 8, 336
MaeIII GTNAC 1 cut(s) 470
MalI GATC 4 cut(s) 104, 282, 395, 546
MboI GATC 4 cut(s) 102, 280, 393, 544
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 2 cut(s) 466, 571
MmeI TCCRAC 3 cut(s) 70, 273, 473
MnlI CCTC 7 cut(s) 63, 401, 493, 526, 555, 577, 581
MseI TTAA 2 cut(s) 369, 458
MslI CAYNNNNRTG 2 cut(s) 35, 80
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 214, 215
NciI CCSGG 2 cut(s) 214, 215
NdeII GATC 4 cut(s) 102, 280, 393, 544
NlaIII CATG 2 cut(s) 259, 560
NlaIV GGNNCC 2 cut(s) 210, 435
OliI CACNNNNGTG 1 cut(s) 35
PagI TCATGA 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 3 cut(s) 117, 317, 514
Psp124BI GAGCTC 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 210, 435
PspPI GGNCC 2 cut(s) 89, 208
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 2 cut(s) 35, 80
SacI GAGCTC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 369, 458
SatI GCNGC 3 cut(s) 116, 316, 513
Sau3AI GATC 4 cut(s) 102, 280, 393, 544
Sau96I GGNCC 2 cut(s) 89, 208
ScrFI CCNGG 2 cut(s) 214, 215
SduI GDGCHC 1 cut(s) 191
SetI ASST 8 cut(s) 102, 138, 191, 273, 439, 492, 504, 514
SfaNI GCATC 1 cut(s) 327
SinI GGWCC 2 cut(s) 89, 208
SmaI CCCGGG 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 35, 80
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 2 cut(s) 466, 571
SsiI CCGC 1 cut(s) 203
SspMI CTAG 2 cut(s) 8, 336
SstI GAGCTC 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 212, 213
TaqI TCGA 7 cut(s) 105, 168, 174, 191, 243, 249, 375
TasI AATT 2 cut(s) 466, 571
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 369, 458
Tru9I TTAA 2 cut(s) 369, 458
TscAI CASTG 2 cut(s) 42, 364
TseI GCWGC 3 cut(s) 115, 315, 512
TspDTI ATGAA 1 cut(s) 244
TspMI CCCGGG 1 cut(s) 213
TspRI CASTG 2 cut(s) 42, 364
VpaK11BI GGWCC 2 cut(s) 89, 208
XmaI CCCGGG 1 cut(s) 213
XspI CTAG 2 cut(s) 8, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.