Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014460

Physical Location & Seq

Genomic Coordinates Forward (+)

19940849 .. 19942097

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G184300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCATTAAAAGAAGCAGCTTCACTCACTTCACTGAAACAACAAGAACAAGAAGAAGAAGAAGAAAGAGAGAGGTTCATAGTTTTGAGCAGCACTTGCAAAGTGGTGGAGTATTTACAGCCAGTGATGTCAAAAGAGCTTCTCTGCAAGTTTCCAGACAACTCTGCTTTCGATTTTGACTACACTCAGAGTTCAATATGGTCCCCTTTGGTCCCTCGAGCTCATGCTCCCATGGATTTGGACTTGGATTTCGATTTCATGACGCCAAGGAAGCTCAATTTCGAGATGGGGTTGGAGTTGGAAAGTCAAAGCAGCATCAAGAAAGTCAGTTCTAGTATTAAGAAGAAGATCTCCACCGCTGGATTTAATATTAGCAGGAGTGCGTTGAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAAGATGGCATTGGCTTCTGATTTCTCTCCAACTCCTGTTAAGGTTCATTGTAACCCCTTAGCCTCAAAGGTATGGAATAAGGTGCTAAAAGCTGCCTCTAAACATTTCAAGAAAAAGAAGAGAGATCCCATGGACCATGTGAGGCTCTCCAATTATCTGAGAGATGGAAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.77

Weight (kDa)

9.71

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15140
fragaria_vesca	FvH4_6g39300
malus_domestica	MD09G1143500.v1.1 MD17G1129800.v1.1
prunus_persica	Prupe.3G184300_v2.0.a1
pyrus_communis	pycom09g06300 pycom17g12240
rosa_chinensis	RchiOBHm_Chr2g0153221 RchiOBHm_Chr3g0480451
rosa_multiflora	Rmu_sc0000442.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095090 Rroxscaffold_5G00335020
rosa_rugosa	Rorug02G0437600
rosa_samantha	Rh2BG512100 Rh2CG486800 Rh4CG218900
rosa_wichuraiana	Rw2G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	1 cut(s)	542
AcyI	GRCGYC	1 cut(s)	263
AgsI	TTSAA	3 cut(s)	195, 388, 532
AluBI	AGCT	5 cut(s)	20, 139, 221, 274, 515
AluI	AGCT	5 cut(s)	20, 139, 221, 274, 515
Alw21I	GWGCWC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	216
ApeKI	GCWGC	4 cut(s)	17, 90, 312, 515
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspS9I	GGNCC	3 cut(s)	201, 211, 556
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	3 cut(s)	201, 211, 556
BanII	GRGCYC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	4 cut(s)	29, 102, 324, 502
BccI	CCATC	3 cut(s)	280, 421, 581
BfaI	CTAG	1 cut(s)	333
BglII	AGATCT	1 cut(s)	348
BisI	GCNGC	4 cut(s)	18, 91, 313, 516
BlsI	GCNGC	4 cut(s)	19, 92, 314, 517
Bme18I	GGWCC	3 cut(s)	201, 211, 556
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	3 cut(s)	201, 211, 556
BmiI	GGNNCC	2 cut(s)	203, 213
BmsI	GCATC	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	481
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	231, 266, 552
Bse1I	ACTGG	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	231, 266, 552
BseMII	CTCAG	2 cut(s)	200, 572
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	4 cut(s)	29, 102, 324, 502
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	216
BslFI	GGGAC	2 cut(s)	187, 197
BsmFI	GGGAC	2 cut(s)	187, 197
BsoBI	CYCGRG	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	348, 547
Bsp19I	CCATGG	2 cut(s)	231, 552
BspACI	CCGC	1 cut(s)	357
BspCNI	CTCAG	2 cut(s)	199, 573
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	203, 213
BspPI	GGATC	1 cut(s)	542
BspQI	GCTCTTC	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	231, 266, 552
BssMI	GATC	2 cut(s)	348, 547
BssNI	GRCGYC	1 cut(s)	263
BssT1I	CCWWGG	3 cut(s)	231, 266, 552
Bst6I	CTCTTC	2 cut(s)	413, 536
BstACI	GRCGYC	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	186, 481, 581
BstDSI	CCRYGG	2 cut(s)	231, 552
BstKTI	GATC	2 cut(s)	351, 550
BstMBI	GATC	2 cut(s)	348, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 271
BstV1I	GCAGC	4 cut(s)	29, 102, 324, 502
BstX2I	RGATCY	2 cut(s)	348, 547
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	2 cut(s)	348, 547
BtgI	CCRYGG	2 cut(s)	231, 552
BtsIMutI	CAGTG	2 cut(s)	32, 129
CciI	TCATGA	1 cut(s)	258
Cfr13I	GGNCC	3 cut(s)	201, 211, 556
CseI	GACGC	1 cut(s)	271
CviAII	CATG	5 cut(s)	224, 232, 259, 553, 560
CviJI	RGCY	9 cut(s)	20, 121, 139, 221, 274, 437, 485, 515, 568
CviKI_1	RGCY	9 cut(s)	20, 121, 139, 221, 274, 437, 485, 515, 568
DdeI	CTNAG	3 cut(s)	186, 481, 581
DpnI	GATC	2 cut(s)	350, 549
DpnII	GATC	2 cut(s)	348, 547
Eam1104I	CTCTTC	2 cut(s)	413, 536
EarI	CTCTTC	2 cut(s)	413, 536
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	3 cut(s)	231, 266, 552
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	3 cut(s)	201, 211, 556
Eco53kI	GAGCTC	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	216
EcoICRI	GAGCTC	1 cut(s)	221
EcoT14I	CCWWGG	3 cut(s)	231, 266, 552
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	3 cut(s)	231, 266, 552
FaeI	CATG	5 cut(s)	227, 235, 262, 556, 563
FaiI	YATR	8 cut(s)	80, 199, 225, 233, 260, 496, 554, 561
FaqI	GGGAC	2 cut(s)	187, 197
FatI	CATG	5 cut(s)	223, 231, 258, 552, 559
Fnu4HI	GCNGC	4 cut(s)	18, 91, 313, 516
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	4 cut(s)	18, 91, 313, 516
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	4 cut(s)	18, 91, 313, 516
HgaI	GACGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	5 cut(s)	227, 235, 262, 556, 563
Hpy188I	TCNGA	3 cut(s)	189, 442, 582
Hpy188III	TCNNGA	5 cut(s)	155, 259, 283, 319, 532
HpyCH4V	TGCA	2 cut(s)	99, 147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 271
HpyF3I	CTNAG	3 cut(s)	186, 481, 581
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	5 cut(s)	227, 235, 262, 556, 563
Kzo9I	GATC	2 cut(s)	348, 547
LguI	GCTCTTC	1 cut(s)	413
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	5 cut(s)	135, 168, 345, 361, 471
Lsp1109I	GCAGC	4 cut(s)	29, 102, 324, 502
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	2 cut(s)	350, 549
MboI	GATC	2 cut(s)	348, 547
MflI	RGATCY	2 cut(s)	348, 547
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	277, 574
MmeI	TCCRAC	3 cut(s)	273, 279, 476
MnlI	CCTC	5 cut(s)	66, 225, 496, 529, 558
MseI	TTAA	4 cut(s)	8, 339, 366, 462
MspA1I	CMGCKG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	96, 271
NcoI	CCATGG	2 cut(s)	231, 552
NdeII	GATC	2 cut(s)	348, 547
NlaIII	CATG	5 cut(s)	227, 235, 262, 556, 563
NlaIV	GGNNCC	2 cut(s)	203, 213
PaeR7I	CTCGAG	1 cut(s)	216
PagI	TCATGA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	19, 92, 314, 517
Psp124BI	GAGCTC	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	203, 213
PspPI	GGNCC	3 cut(s)	201, 211, 556
PspXI	VCTCGAGB	1 cut(s)	216
PsuI	RGATCY	2 cut(s)	348, 547
SacI	GAGCTC	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	4 cut(s)	8, 339, 366, 462
SatI	GCNGC	4 cut(s)	18, 91, 313, 516
Sau3AI	GATC	2 cut(s)	348, 547
Sau96I	GGNCC	3 cut(s)	201, 211, 556
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	9 cut(s)	22, 77, 141, 223, 276, 468, 495, 507, 517
SfaNI	GCATC	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	216
SinI	GGWCC	3 cut(s)	201, 211, 556
SlaI	CTCGAG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	277, 574
SsiI	CCGC	1 cut(s)	357
SspI	AATATT	2 cut(s)	370, 595
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	223
StyI	CCWWGG	3 cut(s)	231, 266, 552
TaqI	TCGA	4 cut(s)	171, 217, 252, 282
TasI	AATT	2 cut(s)	277, 574
Tru1I	TTAA	4 cut(s)	8, 339, 366, 462
Tru9I	TTAA	4 cut(s)	8, 339, 366, 462
TscAI	CASTG	2 cut(s)	39, 129
TseI	GCWGC	4 cut(s)	17, 90, 312, 515
TspDTI	ATGAA	3 cut(s)	67, 247, 458
TspRI	CASTG	2 cut(s)	39, 129
VpaK11BI	GGWCC	3 cut(s)	201, 211, 556
XhoI	CTCGAG	1 cut(s)	216
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.