Rh4CG218900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014460
Physical Location & Seq
Reverse (-)
45239151 .. 45241366
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG218900.1

Sequence Viewer

Length: 462 bp
ATGATTGTTAGTTTGGATGTTCATGACGCTGATCTCGACGACGGTGATGCTAATCTCGATGGTAATGCTGGCCATGACGCCTTTCTCAATGACGGTGACGCCGGCCCTGACGTATGTGACGCCTTTTCCGATGGCCCCGATAAGGGTGACATGATGCTCATCCTGGTGACGACGATGCTAATCTCGATGGTAACGCTGGCCCTGACTTGCCAAGCAGAGGTGGTGATCAGAGGCCGTGTGTGCCACCCAAGCATGAGAGACCCACTGGATATGGAACTCGATTTCATGACCCTGAGAAAGCTCACATTTGATCAAGTGGAGTTGGAGTCCAACAATCAAAGTAGCAGCATCAAGAAAGTGGGTTCTAGTGGTAAGAAGAAGATGTCCACTACTGGGTTTAATCTTAACTTGAGTGCATTGAAGAACAAGAAGTGGAAAGCAACAAGAACGAGATGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.78

Weight (kDa)

5.07

Isoelectric Point (pI)

26.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15140
fragaria_vesca FvH4_6g39300
malus_domestica MD09G1143500.v1.1 MD17G1129800.v1.1
prunus_persica Prupe.3G184300_v2.0.a1
pyrus_communis pycom09g06300 pycom17g12240
rosa_chinensis RchiOBHm_Chr2g0153221 RchiOBHm_Chr3g0480451
rosa_multiflora Rmu_sc0000442.1_g000003
rosa_roxburghii Rroxscaffold_2G00095090 Rroxscaffold_5G00335020
rosa_rugosa Rorug02G0437600
rosa_samantha Rh2BG512100 Rh2CG486800 Rh4CG218900
rosa_wichuraiana Rw2G041080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 70
AcyI GRCGYC 3 cut(s) 78, 99, 120
AfiI CCNNNNNNNGG 4 cut(s) 142, 143, 217, 393
AgsI TTSAA 1 cut(s) 421
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw26I GTCTC 1 cut(s) 252
AoxI GGCC 5 cut(s) 70, 103, 133, 198, 232
ApeKI GCWGC 1 cut(s) 345
AspS9I GGNCC 3 cut(s) 104, 134, 199
AsuHPI GGTGA 5 cut(s) 56, 107, 158, 178, 235
BalI TGGCCA 1 cut(s) 72
BbvI GCAGC 1 cut(s) 357
BccI CCATC 4 cut(s) 53, 125, 181, 447
BceAI ACGGC 1 cut(s) 219
BcgI CGANNNNNNTGC 4 cut(s) 29, 47, 63, 81
BciT130I CCWGG 1 cut(s) 164
BclI TGATCA 2 cut(s) 225, 310
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 366
BisI GCNGC 1 cut(s) 346
BlsI GCNGC 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 104, 134, 199
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 164
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 4 cut(s) 37, 144, 165, 357
BmuI ACTGGG 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 430
BsaBI GATNNNNATC 3 cut(s) 51, 158, 179
BsaHI GRCGYC 3 cut(s) 78, 99, 120
BsaI GGTCTC 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 143, 217, 393
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 270, 397
Bse8I GATNNNNATC 3 cut(s) 51, 158, 179
BseBI CCWGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 22, 159
BseJI GATNNNNATC 3 cut(s) 51, 158, 179
BseLI CCNNNNNNNGG 4 cut(s) 142, 143, 217, 393
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 270, 397
BseXI GCAGC 1 cut(s) 357
BshFI GGCC 5 cut(s) 72, 105, 135, 200, 234
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 4 cut(s) 142, 143, 217, 393
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 5 cut(s) 72, 105, 135, 200, 234
Bso31I GGTCTC 1 cut(s) 252
Bsp143I GATC 3 cut(s) 31, 225, 310
BspANI GGCC 5 cut(s) 72, 105, 135, 200, 234
BspCNI CTCAG 1 cut(s) 285
BspHI TCATGA 2 cut(s) 22, 285
BspLI GGNNCC 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 2 cut(s) 270, 397
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 3 cut(s) 31, 225, 310
BssNI GRCGYC 3 cut(s) 78, 99, 120
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 44, 95
BstACI GRCGYC 3 cut(s) 78, 99, 120
BstC8I GCNNGC 3 cut(s) 70, 103, 198
BstDEI CTNAG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 22, 159
BstKTI GATC 3 cut(s) 34, 228, 313
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 3 cut(s) 31, 225, 310
BstMWI GCNNNNNNNGC 2 cut(s) 240, 249
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 357
BsuRI GGCC 5 cut(s) 72, 105, 135, 200, 234
BtsCI GGATG 2 cut(s) 22, 159
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 3 cut(s) 70, 103, 198
CciI TCATGA 2 cut(s) 22, 285
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 3 cut(s) 104, 134, 199
CseI GACGC 4 cut(s) 35, 86, 107, 128
CviAII CATG 5 cut(s) 23, 74, 151, 253, 286
CviJI RGCY 6 cut(s) 72, 105, 135, 200, 234, 301
CviKI_1 RGCY 6 cut(s) 72, 105, 135, 200, 234, 301
DdeI CTNAG 1 cut(s) 293
DpnI GATC 3 cut(s) 33, 227, 312
DpnII GATC 3 cut(s) 31, 225, 310
EaeI YGGCCR 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 162
FaeI CATG 5 cut(s) 26, 77, 154, 256, 289
FaiI YATR 7 cut(s) 24, 75, 115, 152, 254, 272, 287
FatI CATG 5 cut(s) 22, 73, 150, 252, 285
FbaI TGATCA 2 cut(s) 225, 310
Fnu4HI GCNGC 1 cut(s) 346
FokI GGATG 2 cut(s) 29, 146
Fsp4HI GCNGC 1 cut(s) 346
FspBI CTAG 1 cut(s) 366
GluI GCNGC 1 cut(s) 346
HaeIII GGCC 5 cut(s) 72, 105, 135, 200, 234
HapII CCGG 1 cut(s) 102
HgaI GACGC 4 cut(s) 35, 86, 107, 128
Hin1I GRCGYC 3 cut(s) 78, 99, 120
Hin1II CATG 5 cut(s) 26, 77, 154, 256, 289
HinfI GANTC 1 cut(s) 326
HpaII CCGG 1 cut(s) 102
HphI GGTGA 5 cut(s) 56, 107, 158, 178, 235
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 2 cut(s) 130, 230
Hpy188III TCNNGA 6 cut(s) 23, 35, 56, 184, 286, 352
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 3 cut(s) 41, 44, 175
HpyCH4III ACNGT 2 cut(s) 44, 95
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 249
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 3 cut(s) 78, 99, 120
Hsp92II CATG 5 cut(s) 26, 77, 154, 256, 289
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 2 cut(s) 225, 310
Kzo9I GATC 3 cut(s) 31, 225, 310
Lsp1109I GCAGC 1 cut(s) 357
LweI GCATC 4 cut(s) 37, 144, 165, 357
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 5 cut(s) 95, 116, 146, 166, 190
MalI GATC 3 cut(s) 33, 227, 312
MboI GATC 3 cut(s) 31, 225, 310
MboII GAAGA 3 cut(s) 388, 391, 433
MlsI TGGCCA 1 cut(s) 72
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 303, 354
MnlI CCTC 2 cut(s) 211, 224
Mox20I TGGCCA 1 cut(s) 72
MroNI GCCGGC 1 cut(s) 101
MscI TGGCCA 1 cut(s) 72
MseI TTAA 2 cut(s) 399, 405
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 72
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 240, 249
NaeI GCCGGC 1 cut(s) 103
NdeII GATC 3 cut(s) 31, 225, 310
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 5 cut(s) 26, 77, 154, 256, 289
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 4 cut(s) 95, 116, 146, 166
PagI TCATGA 2 cut(s) 22, 285
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 126
PdiI GCCGGC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 347
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 3 cut(s) 104, 134, 199
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 2 cut(s) 399, 405
SatI GCNGC 1 cut(s) 346
Sau3AI GATC 3 cut(s) 31, 225, 310
Sau96I GGNCC 3 cut(s) 104, 134, 199
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 164
SetI ASST 3 cut(s) 114, 222, 303
SfaNI GCATC 4 cut(s) 37, 144, 165, 357
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 44, 95
TaiI ACGT 1 cut(s) 114
TaqI TCGA 4 cut(s) 36, 57, 185, 279
Tru1I TTAA 2 cut(s) 399, 405
Tru9I TTAA 2 cut(s) 399, 405
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 4 cut(s) 95, 116, 146, 166
TseI GCWGC 1 cut(s) 345
Tsp45I GTSAC 4 cut(s) 95, 116, 146, 166
TspDTI ATGAA 2 cut(s) 11, 274
TspRI CASTG 1 cut(s) 270
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.