Rroxscaffold_2G00095090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014460
Physical Location & Seq
Reverse (-)
16422717 .. 16423666
950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095090.1

Sequence Viewer

Length: 591 bp
ATGGCACTGGAAGGAGATTCATTACTCACTTCACTGAAACTACAACAAGAAGAACACAGAGAGAGGCTGATTGTAGTGAGTGGTCCTTGCAAGGTGGTTGAGTATTTGCAGCCAGTAATGTCAAAAGAGCTTCTCTGCAAGTTCCCAGACAACACTGCCTTCGATTTCGACTACACGCAGAGCTCGATATGGTCTCCGCTGGTCCCCCGGGCTTACGCACCGATGGAGTTGGACTTCGATTTCGATTTCATGACCCCGAGAAAGCTCACATTTGATCAAGTGGAGTTGGAGTCCAACAATCAAAGTAGCAGCATCAAGAAAGTGGGTTCTAGTGGTAAGAAGAAGATGTGCACTGCTGGGTTTAAACTTAACTTGAGTGCATTGAAGAAGAAGAAGTGGAAGAGCAAGAAGAACAAGATGGCATTGGTACCTGATTTCTCTCCAACTCCTGTTAAGGGTAATTGTTACCCCATTGCCTCAAAGGTATGGAATAAGGTGCTGAAAGCTGCCTCTAAGCACTTCAAGAAGAAGAAGAGAGATCCAATGGCCCATGTGAGGCTCTCCAGTTATATCAAAGAGGGAAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.3

Weight (kDa)

9.66

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15140
fragaria_vesca FvH4_6g39300
malus_domestica MD09G1143500.v1.1 MD17G1129800.v1.1
prunus_persica Prupe.3G184300_v2.0.a1
pyrus_communis pycom09g06300 pycom17g12240
rosa_chinensis RchiOBHm_Chr2g0153221 RchiOBHm_Chr3g0480451
rosa_multiflora Rmu_sc0000442.1_g000003
rosa_roxburghii Rroxscaffold_2G00095090 Rroxscaffold_5G00335020
rosa_rugosa Rorug02G0437600
rosa_samantha Rh2BG512100 Rh2CG486800 Rh4CG218900
rosa_wichuraiana Rw2G041080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 427
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 533
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 2 cut(s) 455, 555
AgsI TTSAA 2 cut(s) 385, 523
AluBI AGCT 4 cut(s) 130, 183, 265, 506
AluI AGCT 4 cut(s) 130, 183, 265, 506
Alw21I GWGCWC 2 cut(s) 185, 353
Alw26I GTCTC 1 cut(s) 198
Alw44I GTGCAC 1 cut(s) 349
AlwI GGATC 1 cut(s) 533
Ama87I CYCGRG 2 cut(s) 207, 256
AoxI GGCC 1 cut(s) 546
ApaLI GTGCAC 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 109, 309, 506
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
Asp718I GGTACC 1 cut(s) 427
AspS9I GGNCC 3 cut(s) 83, 202, 547
AsuC2I CCSGG 2 cut(s) 208, 209
AvaI CYCGRG 2 cut(s) 207, 256
AvaII GGWCC 2 cut(s) 83, 202
BaeGI GKGCMC 1 cut(s) 353
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 185, 353
BbvI GCAGC 3 cut(s) 121, 321, 493
BccI CCATC 2 cut(s) 217, 412
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 2 cut(s) 208, 209
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 330
BisI GCNGC 3 cut(s) 110, 310, 507
BlsI GCNGC 3 cut(s) 111, 311, 508
Bme1390I CCNGG 2 cut(s) 208, 209
Bme18I GGWCC 2 cut(s) 83, 202
BmeT110I CYCGRG 2 cut(s) 207, 256
BmgT120I GGNCC 3 cut(s) 83, 202, 547
BmiI GGNNCC 2 cut(s) 204, 429
BmrFI CCNGG 2 cut(s) 208, 209
BmsI GCATC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 547
BpuEI CTTGAG 1 cut(s) 394
BpuMI CCSGG 2 cut(s) 208, 209
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 206, 207
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 555
Bse1I ACTGG 3 cut(s) 12, 113, 564
Bse3DI GCAATG 1 cut(s) 471
BseDI CCNNGG 2 cut(s) 206, 207
BseLI CCNNNNNNNGG 2 cut(s) 455, 555
BseMI GCAATG 1 cut(s) 471
BseNI ACTGG 3 cut(s) 12, 113, 564
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 3 cut(s) 121, 321, 493
BseYI CCCAGC 1 cut(s) 356
BshFI GGCC 1 cut(s) 548
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 2 cut(s) 185, 353
BsiHKCI CYCGRG 2 cut(s) 207, 256
BsiSI CCGG 1 cut(s) 208
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 455, 555
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 548
Bso31I GGTCTC 1 cut(s) 198
BsoBI CYCGRG 2 cut(s) 207, 256
Bsp1286I GDGCHC 2 cut(s) 185, 353
Bsp143I GATC 2 cut(s) 274, 538
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 548
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 204, 429
BspPI GGATC 1 cut(s) 533
BspQI GCTCTTC 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 3 cut(s) 12, 113, 564
BssECI CCNNGG 2 cut(s) 206, 207
BssMI GATC 2 cut(s) 274, 538
Bst6I CTCTTC 2 cut(s) 395, 527
BstDEI CTNAG 1 cut(s) 513
BstKTI GATC 2 cut(s) 277, 541
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 2 cut(s) 274, 538
BstSCI CCNGG 2 cut(s) 206, 207
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 121, 321, 493
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 1 cut(s) 548
BtsI GCAGTG 2 cut(s) 153, 351
BtsIMutI CAGTG 4 cut(s) 5, 32, 153, 351
CciI TCATGA 1 cut(s) 249
Cfr13I GGNCC 3 cut(s) 83, 202, 547
Cfr9I CCCGGG 1 cut(s) 207
Csp6I GTAC 1 cut(s) 428
CviAII CATG 2 cut(s) 250, 551
CviJI RGCY 9 cut(s) 67, 112, 130, 183, 212, 265, 506, 548, 559
CviKI_1 RGCY 9 cut(s) 67, 112, 130, 183, 212, 265, 506, 548, 559
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 1 cut(s) 513
DpnI GATC 2 cut(s) 276, 540
DpnII GATC 2 cut(s) 274, 538
DraI TTTAAA 1 cut(s) 364
Eam1104I CTCTTC 2 cut(s) 395, 527
EarI CTCTTC 2 cut(s) 395, 527
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 83, 202
Eco53kI GAGCTC 1 cut(s) 183
Eco88I CYCGRG 2 cut(s) 207, 256
EcoICRI GAGCTC 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 2 cut(s) 253, 554
FaiI YATR 5 cut(s) 190, 251, 487, 552, 570
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 249, 550
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 110, 310, 507
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 3 cut(s) 110, 310, 507
FspBI CTAG 1 cut(s) 330
GluI GCNGC 3 cut(s) 110, 310, 507
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 547
HaeIII GGCC 1 cut(s) 548
HapII CCGG 1 cut(s) 208
Hin1II CATG 2 cut(s) 253, 554
HinfI GANTC 2 cut(s) 17, 290
HpaII CCGG 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 1 cut(s) 590
Hpy188III TCNNGA 3 cut(s) 250, 316, 523
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 2 cut(s) 5, 169
HpyCH4V TGCA 5 cut(s) 90, 109, 138, 351, 380
HpyF3I CTNAG 1 cut(s) 513
Hsp92II CATG 2 cut(s) 253, 554
KpnI GGTACC 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 274, 538
LguI GCTCTTC 1 cut(s) 395
LpnPI CCDG 8 cut(s) 126, 159, 185, 221, 342, 444, 462, 577
Lsp1109I GCAGC 3 cut(s) 121, 321, 493
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 464
MalI GATC 2 cut(s) 276, 540
MboI GATC 2 cut(s) 274, 538
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 185, 353
MluCI AATT 1 cut(s) 460
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 4 cut(s) 210, 267, 318, 467
MnlI CCTC 5 cut(s) 57, 487, 520, 549, 571
MseI TTAA 3 cut(s) 363, 369, 453
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 2 cut(s) 208, 209
MssI GTTTAAAC 1 cut(s) 364
NciI CCSGG 2 cut(s) 208, 209
NdeII GATC 2 cut(s) 274, 538
NlaIII CATG 2 cut(s) 253, 554
NlaIV GGNNCC 2 cut(s) 204, 429
PagI TCATGA 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 111, 311, 508
PleI GAGTC 1 cut(s) 298
PmeI GTTTAAAC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 204, 429
PspPI GGNCC 3 cut(s) 83, 202, 547
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SacI GAGCTC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 395
SaqAI TTAA 3 cut(s) 363, 369, 453
SatI GCNGC 3 cut(s) 110, 310, 507
Sau3AI GATC 2 cut(s) 274, 538
Sau96I GGNCC 3 cut(s) 83, 202, 547
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 2 cut(s) 208, 209
SduI GDGCHC 2 cut(s) 185, 353
SetI ASST 8 cut(s) 96, 132, 185, 267, 433, 486, 498, 508
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 2 cut(s) 83, 202
SmaI CCCGGG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 1 cut(s) 460
SsiI CCGC 1 cut(s) 197
SspMI CTAG 1 cut(s) 330
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 206, 207
TaqI TCGA 5 cut(s) 162, 168, 185, 237, 243
TasI AATT 1 cut(s) 460
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 3 cut(s) 363, 369, 453
Tru9I TTAA 3 cut(s) 363, 369, 453
TscAI CASTG 4 cut(s) 12, 39, 160, 358
TseI GCWGC 3 cut(s) 109, 309, 506
TspDTI ATGAA 2 cut(s) 9, 238
TspMI CCCGGG 1 cut(s) 207
TspRI CASTG 4 cut(s) 12, 39, 160, 358
VneI GTGCAC 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 83, 202
XmaI CCCGGG 1 cut(s) 207
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.