RchiOBHm_Chr2g0153221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014460
Physical Location & Seq
Forward (+)
70637654 .. 70639038
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52230

Sequence Viewer

Length: 591 bp
ATGGCACTGGAAGGAGATTCACTACTCACTTCACTAAAACTACAACAGGAAGAACAGAGAGAGAGGCTTATTATAGTGAGCGGTCCTTGCAAGGTGGTTGAGTATTTGCAGCCAGTAATGTCAAAAGAGCTTCTCTGCAAGTTCCCAGACAACTCTGCCTTCGATTTCGACTACACGCAGAGCTCGATATGGTCTCCGCTGGTCCCGCGGGCTTACGCTCCGATGGATTTGGACTTCGATTTCGATTTCATGACCCCGAGAAAGCTCACATTTGATCAAGTGGAGTTGGAGTCTAACAATCAAAGTAGCAGCATCAAGAAAGTGGGTTCTAGTGGTAAGAAGAAGATGTGCACTGCTGGGTTTAATCTTAACTTGAGTGCATTGAAGAAGAAGAAGTGGAGAAGCAAGAAGAACAAGATGGCATTGGTACCTGATTTCTCTCCAACTCCTGTTAAGGGTAATTGTTACCCCATTGCCTCAAAGGTATGGAATAAGGTGCTGAAAGCTGCCTCCAAGCACTTCAAGAAGAAGAAGAGAGATCCAATGGCTCATGTGAGGCTCTCCAATTACATCAAAGAGGGAAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.32

Weight (kDa)

9.64

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15140
fragaria_vesca FvH4_6g39300
malus_domestica MD09G1143500.v1.1 MD17G1129800.v1.1
prunus_persica Prupe.3G184300_v2.0.a1
pyrus_communis pycom09g06300 pycom17g12240
rosa_chinensis RchiOBHm_Chr2g0153221 RchiOBHm_Chr3g0480451
rosa_multiflora Rmu_sc0000442.1_g000003
rosa_roxburghii Rroxscaffold_2G00095090 Rroxscaffold_5G00335020
rosa_rugosa Rorug02G0437600
rosa_samantha Rh2BG512100 Rh2CG486800 Rh4CG218900
rosa_wichuraiana Rw2G041080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 81
AccII CGCG 1 cut(s) 208
AciI CCGC 4 cut(s) 81, 197, 206, 208
AclWI GGATC 1 cut(s) 533
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 2 cut(s) 385, 523
AluBI AGCT 4 cut(s) 130, 183, 265, 506
AluI AGCT 4 cut(s) 130, 183, 265, 506
Alw21I GWGCWC 2 cut(s) 185, 353
Alw26I GTCTC 1 cut(s) 198
Alw44I GTGCAC 1 cut(s) 349
AlwI GGATC 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 256
ApaLI GTGCAC 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 109, 309, 506
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
Asp718I GGTACC 1 cut(s) 427
AspS9I GGNCC 2 cut(s) 83, 202
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 2 cut(s) 83, 202
BaeGI GKGCMC 1 cut(s) 353
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 185, 353
BbvI GCAGC 3 cut(s) 121, 321, 493
BccI CCATC 2 cut(s) 217, 412
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 330
BisI GCNGC 3 cut(s) 110, 310, 507
BlsI GCNGC 3 cut(s) 111, 311, 508
Bme18I GGWCC 2 cut(s) 83, 202
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 83, 202
BmiI GGNNCC 2 cut(s) 204, 429
BmsI GCATC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 394
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse1I ACTGG 2 cut(s) 12, 113
Bse3DI GCAATG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMI GCAATG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 12, 113
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 3 cut(s) 121, 321, 493
BseYI CCCAGC 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 2 cut(s) 185, 353
BsiHKCI CYCGRG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 188
Bso31I GGTCTC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 185, 353
Bsp143I GATC 2 cut(s) 274, 538
BspACI CCGC 4 cut(s) 81, 197, 206, 208
BspFNI CGCG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 204, 429
BspPI GGATC 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 198
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 2 cut(s) 12, 113
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 2 cut(s) 274, 538
Bst6I CTCTTC 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 206
BstFNI CGCG 1 cut(s) 208
BstKTI GATC 2 cut(s) 277, 541
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 2 cut(s) 274, 538
BstMWI GCNNNNNNNGC 2 cut(s) 87, 205
BstSLI GKGCMC 1 cut(s) 353
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 3 cut(s) 121, 321, 493
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BtgI CCRYGG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 5, 351
Cac8I GCNNGC 1 cut(s) 210
CciI TCATGA 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 83, 202
Cfr42I CCGCGG 1 cut(s) 209
Csp6I GTAC 1 cut(s) 428
CviAII CATG 2 cut(s) 250, 551
CviJI RGCY 9 cut(s) 67, 112, 130, 183, 212, 265, 506, 548, 559
CviKI_1 RGCY 9 cut(s) 67, 112, 130, 183, 212, 265, 506, 548, 559
CviQI GTAC 1 cut(s) 428
DpnI GATC 2 cut(s) 276, 540
DpnII GATC 2 cut(s) 274, 538
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 83, 202
Eco53kI GAGCTC 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 2 cut(s) 253, 554
FaiI YATR 5 cut(s) 74, 190, 251, 487, 552
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 249, 550
FauI CCCGC 2 cut(s) 201, 213
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 110, 310, 507
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 3 cut(s) 110, 310, 507
FspBI CTAG 1 cut(s) 330
GluI GCNGC 3 cut(s) 110, 310, 507
GsaI CCCAGC 1 cut(s) 360
Hin1II CATG 2 cut(s) 253, 554
HinfI GANTC 2 cut(s) 17, 290
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 2 cut(s) 222, 590
Hpy188III TCNNGA 3 cut(s) 250, 316, 523
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 2 cut(s) 5, 169
HpyCH4V TGCA 5 cut(s) 90, 109, 138, 351, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 205
Hsp92II CATG 2 cut(s) 253, 554
KpnI GGTACC 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 274
KspI CCGCGG 1 cut(s) 209
Kzo9I GATC 2 cut(s) 274, 538
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 7 cut(s) 32, 126, 159, 185, 342, 444, 462
Lsp1109I GCAGC 3 cut(s) 121, 321, 493
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 464
MalI GATC 2 cut(s) 276, 540
MbiI CCGCTC 1 cut(s) 81
MboI GATC 2 cut(s) 274, 538
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 185, 353
MluCI AATT 2 cut(s) 460, 565
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 267, 467
MnlI CCTC 5 cut(s) 57, 487, 520, 549, 571
MseI TTAA 3 cut(s) 363, 369, 453
MspA1I CMGCKG 2 cut(s) 199, 208
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 87, 205
NdeII GATC 2 cut(s) 274, 538
NlaIII CATG 2 cut(s) 253, 554
NlaIV GGNNCC 2 cut(s) 204, 429
PagI TCATGA 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 111, 311, 508
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 204, 429
PspPI GGNCC 2 cut(s) 83, 202
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SacI GAGCTC 1 cut(s) 185
SacII CCGCGG 1 cut(s) 209
SaqAI TTAA 3 cut(s) 363, 369, 453
SatI GCNGC 3 cut(s) 110, 310, 507
Sau3AI GATC 2 cut(s) 274, 538
Sau96I GGNCC 2 cut(s) 83, 202
SchI GAGTC 1 cut(s) 299
SduI GDGCHC 2 cut(s) 185, 353
SetI ASST 8 cut(s) 96, 132, 185, 267, 433, 486, 498, 508
SfaNI GCATC 1 cut(s) 321
Sfr303I CCGCGG 1 cut(s) 209
SgrBI CCGCGG 1 cut(s) 209
SinI GGWCC 2 cut(s) 83, 202
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 2 cut(s) 460, 565
SsiI CCGC 4 cut(s) 81, 197, 206, 208
SspMI CTAG 1 cut(s) 330
SstI GAGCTC 1 cut(s) 185
TaqI TCGA 5 cut(s) 162, 168, 185, 237, 243
TasI AATT 2 cut(s) 460, 565
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 3 cut(s) 363, 369, 453
Tru9I TTAA 3 cut(s) 363, 369, 453
TscAI CASTG 2 cut(s) 12, 358
TseI GCWGC 3 cut(s) 109, 309, 506
TspDTI ATGAA 1 cut(s) 238
TspRI CASTG 2 cut(s) 12, 358
VneI GTGCAC 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 83, 202
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.