FvH4_6g41080

Pentatricopeptide repeat-containing protein At5g65560-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015670
Physical Location & Seq
Forward (+)
32407039 .. 32412541
5503 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41080.t2

Sequence Viewer

Length: 2784 bp
ATGTTAAACCCCATCAAAACCCCAACTCTCCTTCACCTCAGAACCCTCCAATCTCTATTGGGTCCTCACCATTTCCCCAAATTCCCATCAAGAACCAAGCTTTTCACCCATCTCTGTCATTCTTCCCCAAATCCTTCACCAAACTTGGTCTCTCGAGTATGTGACATTCTGGGTGACCCCAAATGGGAAAAAATCTCAGAGCTTTCGGGTCTGATCATCAATCTCAGAACCTATCACATGGTGAAGATCATTCAGACTCACAGGAACACAGACTCGGCTTTGAGATTCTTCTTCTGGGTTTCGAGGAGGAAGCCATACAAGCATGACATGAACTGCTTCGTTTCAATGCTGGATAGGCTTGTGAGGGAGAAGCTTTTCGGGCCGGCAGACCATGTAAGGCTTTTGCTTGTTAAAGGTTGTAGGAATGAGGAAGAGCTTAAATGGGTTGTTGAGTATTTGAATGAAAAGAAAAGAAATGGTTTTGGGTTCACATTGTATAGTTTCAATACGCTTTTGATTCAGTTGGGCAAGTTTGGGATGGTTAGTGAAGCTCAGAGTGTGTATAATGAGATAATGAGTAGTGAGGTTAAGCCGAGTTTGTTGACATTTAATACTATGATCAATATATTGTGCAAGAAGGGCAAGGTTCAGGAAGCAGAGATGATTTTCAGCAGGATTATTCAGTATGAAATGTTGCCGGATGTTTTTACTTATACATCGTTGGTTCTCGGGCATTGTAGAAATCGTAACTTAGATTTGGCATTTGAAGTTTATGACCGGATGGTGAAAGCGGGTTGTGACCCGAATTCAGTTACATACTCAACACTTATTAATGGGTTGTGCAGTGAGGGGAGGGTGGACGAGGCACTGGATATGCTTGATGAAATGATAGAGAAAGGGATTGAACCCACAGCATATACTTACACTGTCCCAATTACTTCACTTTGTGAGGCAAATCGACCATTGGAAGCAATCAGGCTTTTCAGAAGTATGACGAAGAGGGGTTGCTATCCGAACATCCATACTTATACAGCATTGATCAGCGGGTTGTCTCAGACAGGGAAACTCGAAGTTGCTATTGGACTCTATCACAAACTGTTGAAGGATGGTATGGTTCCAAGCATGGTTACCTTTAACACAATTATGAATGAATCAATTGAGGCAGGAAGATATGACATTGGTCTGGAGATTATTTATTGGATGGAGAGTCATGGTTATGCTATCTCAGAAAATATCCGAACACACAATCATATCATTAAGGGCTTGTGCTTGATGGATAAGATTCACAATGCCATGGCTCTTTTAAGCAAAATGCTTGAGGTGGGACCATCTCCAAATGTGATTACATATAACACACTGATCGATGGATACCTCAATAGAGGTAATCTGAACAATGCGCTGAGGTTATTAGAGTTGATGAAAGGGAGAGGATGTAAACTAGATGAGTGGACGTACACCGAAGTTATCTCTGGGTGTTGCAAGGTGCACAAGTCTAAATTTGCATCTAATCTTTTCCATGAGATGTTAAAACAGGGCATTAGCCCTAATCAGGTCACTTACAACGTTTTGATTGTTGGATGCTGTAATGAGGGGAAGGTAGATGATGCCTTGTCATTTTTCAAGCAGATGGAAGAGACTGGTTGCTGCCCGAATATTGAAAGCTACAATGCTATTATACATGGTTTGTCCAAAGACAATCAGTTTGCTAAAGCCAAGCAAGTGTTTAAAAAGATGGTGGATCAAGGTCTGCTTCCGAATGTCATTACCTACACATCTTTAATTGATGGCCTCTGTAAGAATGGTAGTACTGACCTTGCATTCAAGATTTTTCATGAAATGAGAGAAAGAGATTGCTTGCCGAACTTGTACACTTATAGTTCACTTGTTTTCGGGTTATGTCAAGAGGGCAAGGCTGATGATGCTGAGAGGTTACTTGAAGAAATGGAAATGGAAGGATTGGTTCCTGATGTGGTAACATTTACCACGCTCATTAATGGTTTTGTTATGCTTGGTAGGCTAGATCATGCATTCTTACTTCTTAAGCGAATGGTTGATGTTGGCTGCAAACCCAACTATTTTACGTTTACTGTATTGGTCAAAGGGTTGAAAAGGGAAAGTCAATTACTCACAGAAAAGGTTGTGGGCCTTGCGACCCAACATGAAGTACAGTGCAGTTCCAGCTCTAACAAGAGATGCAACGATCTTGAGATATTGTGTAATCTCTTAGATAAGATATCAGAGAATGGATGTGAACCAACTACAGAAACCTACCATAGTTTAGTGAGAGGCTTGTGTGAAGATAGAAAATATGAAGAAGTAGATCAGTTGGTGGAGCATATGAAAGAGAAAGGCCTGTATCCCAGTGAAGAGTTTTATAGGCCTATGTTCTTTGCTAATTGCAAGAACTTGAAACTGGACTCTGCTCTGGAAATGCTTAGTGGCTTGATGGCAGATAGAGGCCTTGAGGTTGACTTTTCAATCTATACAGCACTTATTTGTGCTTTCTGCAGGGCAAATCGGATGGAAGAAGCTGAAAACTTGTTGAAAAGTATGCTAGAATGCCAATGGAATGCTAACGAGATTGTTTGGACTGTACTAATTGATGGGTTACTGAAGGAAGGGCAGTCAGATCCATGCATGCATCTTCTTCATGTTATTGAATCTCAAAACTGCATTCTCTGGGTTGAGACATATGCAATTTTAGCCAGAGAACGTTCTCACGTAAACAAAAGTATGGTGACTTCTCAGATTGCTAACAGAGCGGTAGAATTAGAAGCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

928

Amino Acids

105.55

Weight (kDa)

6.3

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 137 - 284 4.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 166 - 211 7.1e-07 PPR repeat family
PPR_1 PF12854 196 - 224 1.1e-07 PPR repeat
PPR_2 PF13041 198 - 247 9.4e-12 PPR repeat family
PPR PF01535 202 - 228 7e-06 PPR repeat
PPR_1 PF12854 231 - 262 1.5e-08 PPR repeat
PPR_3 PF13812 233 - 278 5.3e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 233 - 281 2.1e-18 PPR repeat family
PPR PF01535 236 - 266 1.8e-06 PPR repeat
TPR_24 PF23276 247 - 365 1.2e-09 Fungal tetratrico peptide repeats
PPR_1 PF12854 265 - 296 3.2e-16 PPR repeat
PPR PF01535 271 - 301 1.5e-10 PPR repeat
PPR_2 PF13041 275 - 316 5.8e-14 PPR repeat family
PPR_long PF17177 285 - 410 6.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 312 - 351 4.1e-11 PPR repeat family
PPR_3 PF13812 326 - 383 2.7e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 342 - 383 6.5e-08 PPR repeat family
PPR_3 PF13812 408 - 457 3.4e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 411 - 455 7.4e-09 PPR repeat family
PPR_1 PF12854 442 - 474 4.1e-09 PPR repeat
PPR_2 PF13041 445 - 494 2.9e-17 PPR repeat family
PPR PF01535 448 - 478 5e-07 PPR repeat
PPR_long PF17177 462 - 574 1.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 468 - 528 7.7e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 484 - 529 1.1e-13 PPR repeat family
PPR_1 PF12854 512 - 544 7.2e-12 PPR repeat
PPR_2 PF13041 515 - 555 4.2e-12 PPR repeat family
PPR PF01535 518 - 548 1.8e-08 PPR repeat
PPR_3 PF13812 523 - 560 6.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 547 - 579 4.7e-07 PPR repeat
PPR_2 PF13041 550 - 599 4.3e-17 PPR repeat family
PPR_long PF17177 567 - 698 1.1e-12 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 571 - 682 1.8e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 574 - 628 1.3e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 582 - 614 1e-13 PPR repeat
PPR_2 PF13041 585 - 634 2e-18 PPR repeat family
PPR PF01535 588 - 618 3.2e-09 PPR repeat
PPR_1 PF12854 617 - 649 2.6e-12 PPR repeat
PPR PF01535 623 - 653 2.5e-06 PPR repeat
PPR_2 PF13041 629 - 668 2.2e-10 PPR repeat family
PPR_3 PF13812 643 - 700 1.7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 652 - 684 2.1e-09 PPR repeat
PPR_2 PF13041 655 - 703 1.1e-13 PPR repeat family
PPR PF01535 658 - 688 8e-06 PPR repeat
PPR_long PF17177 733 - 866 9e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 819 - 851 5.8e-08 PPR repeat
PPR_2 PF13041 826 - 872 2.5e-08 PPR repeat family
PPR PF01535 827 - 854 3.7e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015670)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41080 FvH4_6g41080 FvH4_6g41080
malus_domestica MD09G1122300.v1.1
prunus_persica Prupe.3G201200_v2.0.a1
pyrus_communis pycom09g04670
rosa_chinensis RchiOBHm_Chr2g0156641
rosa_laevigata RLG00000020927
rosa_multiflora Rmu_sc0018228.1_g000003
rosa_roxburghii Rroxscaffold_2G00092880
rosa_rugosa Rorug02G0454900
rosa_samantha Rh2AG520600 Rh2BG533700 Rh2CG505600 Rh2DG542500
rosa_wichuraiana Rw2G042950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 2762
AciI CCGC 3 cut(s) 791, 1044, 2762
AclI AACGTT 2 cut(s) 1563, 2713
AclWI GGATC 2 cut(s) 1746, 2624
AcsI RAATTY 3 cut(s) 80, 805, 1496
AcuI CTGAAG 1 cut(s) 2633
AdeI CACNNNGTG 2 cut(s) 241, 947
AfaI GTAC 5 cut(s) 1454, 1807, 1868, 2166, 2595
AfiI CCNNNNNNNGG 2 cut(s) 184, 1549
AflII CTTAAG 1 cut(s) 2039
AjuI GAANNNNNNNTTGG 2 cut(s) 1062, 1094
AluBI AGCT 8 cut(s) 100, 202, 373, 436, 551, 1662, 2181, 2531
AluI AGCT 8 cut(s) 100, 202, 373, 436, 551, 1662, 2181, 2531
Alw21I GWGCWC 1 cut(s) 1488
Alw26I GTCTC 4 cut(s) 154, 1056, 1628, 2681
Alw44I GTGCAC 1 cut(s) 1484
AlwI GGATC 2 cut(s) 1746, 2624
Ama87I CYCGRG 2 cut(s) 153, 728
AoxI GGCC 6 cut(s) 380, 1786, 2143, 2350, 2378, 2458
ApaLI GTGCAC 1 cut(s) 1484
ApeKI GCWGC 2 cut(s) 1644, 2061
ApoI RAATTY 3 cut(s) 80, 805, 1496
ArsI GACNNNNNNTTYG 2 cut(s) 1685, 1717
AseI ATTAAT 2 cut(s) 831, 1992
Asp700I GAANNNNTTC 2 cut(s) 335, 374
AspLEI GCGC 1 cut(s) 1399
AspS9I GGNCC 4 cut(s) 62, 380, 1325, 2143
AsuHPI GGTGA 8 cut(s) 26, 59, 97, 129, 185, 253, 796, 2749
AvaI CYCGRG 2 cut(s) 153, 728
AvaII GGWCC 2 cut(s) 62, 1325
BaeGI GKGCMC 1 cut(s) 1488
BarI GAAGNNNNNNTAC 2 cut(s) 2725, 2757
Bbv12I GWGCWC 1 cut(s) 1488
BbvCI CCTCAGC 1 cut(s) 1400
BbvI GCAGC 2 cut(s) 1631, 2048
BciVI GTATCC 2 cut(s) 1361, 2367
BclI TGATCA 3 cut(s) 213, 618, 1038
BcoDI GTCTC 4 cut(s) 154, 1056, 1628, 2681
BfaI CTAG 3 cut(s) 1439, 2018, 2555
BfmI CTRYAG 2 cut(s) 2259, 2506
BfrI CTTAAG 1 cut(s) 2039
BfuI GTATCC 2 cut(s) 1361, 2367
BisI GCNGC 2 cut(s) 1645, 2062
BlsI GCNGC 2 cut(s) 1646, 2063
BmcAI AGTACT 1 cut(s) 1807
Bme18I GGWCC 2 cut(s) 62, 1325
BmeT110I CYCGRG 2 cut(s) 153, 728
BmgT120I GGNCC 4 cut(s) 62, 380, 1325, 2143
BmiI GGNNCC 4 cut(s) 63, 1116, 1326, 1962
BmrI ACTGGG 1 cut(s) 2355
BmsI GCATC 6 cut(s) 1511, 1568, 1594, 1909, 2183, 2650
BmuI ACTGGG 1 cut(s) 2355
BoxI GACNNNNGTC 1 cut(s) 1179
BpmI CTGGAG 1 cut(s) 1205
Bpu10I CCTNAGC 1 cut(s) 1400
BpuEI CTTGAG 3 cut(s) 1337, 2225, 2483
Bsa29I ATCGAT 1 cut(s) 1362
BsaAI YACGTR 1 cut(s) 2722
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 1293
BsaWI WCCGGW 1 cut(s) 777
BsaXI ACNNNNNCTCC 2 cut(s) 1417, 1447
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 1549
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 4 cut(s) 873, 1642, 2361, 2418
BseCI ATCGAT 1 cut(s) 1362
BseDI CCNNGG 1 cut(s) 1293
BseLI CCNNNNNNNGG 2 cut(s) 184, 1549
BseMII CTCAG 9 cut(s) 52, 210, 238, 566, 1067, 1239, 1391, 1914, 2759
BseNI ACTGG 4 cut(s) 873, 1642, 2361, 2418
BseRI GAGGAG 1 cut(s) 319
BseSI GKGCMC 1 cut(s) 1488
BseXI GCAGC 2 cut(s) 1631, 2048
BsgI GTGCAG 2 cut(s) 862, 2191
BshFI GGCC 6 cut(s) 382, 1788, 2145, 2352, 2380, 2460
BshVI ATCGAT 1 cut(s) 1362
BsiHKAI GWGCWC 1 cut(s) 1488
BsiHKCI CYCGRG 2 cut(s) 153, 728
BsiSI CCGG 3 cut(s) 383, 698, 778
BslFI GGGAC 2 cut(s) 914, 1338
BslI CCNNNNNNNGG 2 cut(s) 184, 1549
BsmAI GTCTC 4 cut(s) 154, 1056, 1628, 2681
BsmFI GGGAC 2 cut(s) 914, 1338
BsmI GAATGC 5 cut(s) 1817, 2027, 2564, 2575, 2673
BsnI GGCC 6 cut(s) 382, 1788, 2145, 2352, 2380, 2460
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 2 cut(s) 153, 728
Bsp1286I GDGCHC 1 cut(s) 1488
Bsp1407I TGTACA 1 cut(s) 1866
Bsp19I CCATGG 1 cut(s) 1293
BspACI CCGC 3 cut(s) 791, 1044, 2762
BspANI GGCC 6 cut(s) 382, 1788, 2145, 2352, 2380, 2460
BspCNI CTCAG 9 cut(s) 51, 209, 237, 565, 1066, 1238, 1392, 1915, 2758
BspDI ATCGAT 1 cut(s) 1362
BspHI TCATGA 1 cut(s) 1831
BspLI GGNNCC 4 cut(s) 63, 1116, 1326, 1962
BspMAI CTGCAG 1 cut(s) 2510
BspPI GGATC 2 cut(s) 1746, 2624
BspQI GCTCTTC 1 cut(s) 426
BspTI CTTAAG 1 cut(s) 2039
BspTNI GGTCTC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 2762
BsrFI RCCGGY 1 cut(s) 382
BsrGI TGTACA 1 cut(s) 1866
BsrI ACTGG 4 cut(s) 873, 1642, 2361, 2418
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 1293
BssT1I CCWWGG 1 cut(s) 1293
Bst4CI ACNGT 5 cut(s) 928, 1098, 2089, 2169, 2593
Bst6I CTCTTC 4 cut(s) 426, 992, 1626, 2361
BstAFI CTTAAG 1 cut(s) 2039
BstAUI TGTACA 1 cut(s) 1866
BstBAI YACGTR 1 cut(s) 2722
BstC8I GCNNGC 3 cut(s) 384, 1856, 2639
BstDSI CCRYGG 1 cut(s) 1293
BstEII GGTNACC 2 cut(s) 173, 1126
BstHHI GCGC 1 cut(s) 1399
BstMAI GTCTC 4 cut(s) 154, 1056, 1628, 2681
BstMWI GCNNNNNNNGC 9 cut(s) 319, 355, 379, 639, 1919, 2014, 2178, 2702, 2759
BstNSI RCATGY 1 cut(s) 2641
BstPAI GACNNNNGTC 1 cut(s) 1179
BstPI GGTNACC 2 cut(s) 173, 1126
BstSFI CTRYAG 2 cut(s) 2259, 2506
BstSLI GKGCMC 1 cut(s) 1488
BstV1I GCAGC 2 cut(s) 1631, 2048
BstX2I RGATCY 1 cut(s) 2629
BstYI RGATCY 1 cut(s) 2629
Bsu15I ATCGAT 1 cut(s) 1362
BsuI GTATCC 2 cut(s) 1361, 2367
BsuRI GGCC 6 cut(s) 382, 1788, 2145, 2352, 2380, 2460
BsuTUI ATCGAT 1 cut(s) 1362
BtgI CCRYGG 1 cut(s) 1293
BtsI GCAGTG 1 cut(s) 850
BtsIMutI CAGTG 6 cut(s) 850, 866, 924, 1355, 2174, 2368
Cac8I GCNNGC 3 cut(s) 384, 1856, 2639
CciI TCATGA 1 cut(s) 1831
CfoI GCGC 1 cut(s) 1399
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 4 cut(s) 62, 380, 1325, 2143
ClaI ATCGAT 1 cut(s) 1362
Csp6I GTAC 5 cut(s) 1453, 1806, 1867, 2165, 2594
CviQI GTAC 5 cut(s) 1453, 1806, 1867, 2165, 2594
DraI TTTAAA 1 cut(s) 1726
DraIII CACNNNGTG 2 cut(s) 241, 947
Eam1104I CTCTTC 4 cut(s) 426, 992, 1626, 2361
EarI CTCTTC 4 cut(s) 426, 992, 1626, 2361
Eco130I CCWWGG 1 cut(s) 1293
Eco147I AGGCCT 3 cut(s) 2352, 2380, 2460
Eco31I GGTCTC 1 cut(s) 154
Eco32I GATATC 1 cut(s) 2235
Eco47I GGWCC 2 cut(s) 62, 1325
Eco57I CTGAAG 1 cut(s) 2633
Eco88I CYCGRG 2 cut(s) 153, 728
Eco91I GGTNACC 2 cut(s) 173, 1126
EcoO109I RGGNCCY 1 cut(s) 62
EcoO65I GGTNACC 2 cut(s) 173, 1126
EcoRI GAATTC 1 cut(s) 805
EcoRV GATATC 1 cut(s) 2235
EcoT14I CCWWGG 1 cut(s) 1293
EcoT22I ATGCAT 3 cut(s) 2029, 2639, 2643
ErhI CCWWGG 1 cut(s) 1293
FalI AAGNNNNNCTT 2 cut(s) 1734, 1766
FaqI GGGAC 2 cut(s) 914, 1338
FauI CCCGC 2 cut(s) 784, 1037
FauNDI CATATG 2 cut(s) 2337, 2692
FbaI TGATCA 3 cut(s) 213, 618, 1038
Fnu4HI GCNGC 2 cut(s) 1645, 2062
Fsp4HI GCNGC 2 cut(s) 1645, 2062
FspBI CTAG 3 cut(s) 1439, 2018, 2555
GlaI GCGC 1 cut(s) 1398
GluI GCNGC 2 cut(s) 1645, 2062
GsuI CTGGAG 1 cut(s) 1205
HaeIII GGCC 6 cut(s) 382, 1788, 2145, 2352, 2380, 2460
HapII CCGG 3 cut(s) 383, 698, 778
HhaI GCGC 1 cut(s) 1399
Hin6I GCGC 1 cut(s) 1397
HinP1I GCGC 1 cut(s) 1397
HincII GTYRAC 2 cut(s) 603, 2470
HindII GTYRAC 2 cut(s) 603, 2470
HindIII AAGCTT 2 cut(s) 98, 371
HpaII CCGG 3 cut(s) 383, 698, 778
HphI GGTGA 8 cut(s) 26, 59, 97, 129, 185, 253, 796, 2749
HpyAV CCTTC 8 cut(s) 41, 144, 631, 1096, 1588, 1946, 2608, 2612
HpyCH4III ACNGT 5 cut(s) 928, 1098, 2089, 2169, 2593
HpyCH4IV ACGT 5 cut(s) 1451, 1563, 2081, 2713, 2721
HpyF10VI GCNNNNNNNGC 9 cut(s) 319, 355, 379, 639, 1919, 2014, 2178, 2702, 2759
HpySE526I ACGT 5 cut(s) 1451, 1563, 2081, 2713, 2721
HspAI GCGC 1 cut(s) 1397
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Ksp22I TGATCA 3 cut(s) 213, 618, 1038
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 1 cut(s) 2332
Lsp1109I GCAGC 2 cut(s) 1631, 2048
LweI GCATC 6 cut(s) 1511, 1568, 1594, 1909, 2183, 2650
MaeI CTAG 3 cut(s) 1439, 2018, 2555
MaeII ACGT 5 cut(s) 1451, 1563, 2081, 2713, 2721
MbiI CCGCTC 1 cut(s) 2762
MfeI CAATTG 1 cut(s) 1155
MflI RGATCY 1 cut(s) 2629
MhlI GDGCHC 1 cut(s) 1488
MlyI GAGTC 5 cut(s) 250, 266, 1077, 1216, 2411
MmeI TCCRAC 1 cut(s) 1555
Mph1103I ATGCAT 3 cut(s) 2029, 2639, 2643
MroNI GCCGGC 1 cut(s) 382
MroXI GAANNNNTTC 2 cut(s) 335, 374
MslI CAYNNNNRTG 2 cut(s) 1142, 1215
MspA1I CMGCKG 1 cut(s) 1044
MspCI CTTAAG 1 cut(s) 2039
MspI CCGG 3 cut(s) 383, 698, 778
MunI CAATTG 1 cut(s) 1155
Mva1269I GAATGC 5 cut(s) 1817, 2027, 2564, 2575, 2673
MwoI GCNNNNNNNGC 9 cut(s) 319, 355, 379, 639, 1919, 2014, 2178, 2702, 2759
NaeI GCCGGC 1 cut(s) 384
NcoI CCATGG 1 cut(s) 1293
NdeI CATATG 2 cut(s) 2337, 2692
NgoMIV GCCGGC 1 cut(s) 382
NlaIV GGNNCC 4 cut(s) 63, 1116, 1326, 1962
NmeAIII GCCGAG 2 cut(s) 254, 618
NmuCI GTSAC 5 cut(s) 161, 173, 797, 1552, 2737
NsiI ATGCAT 3 cut(s) 2029, 2639, 2643
NspI RCATGY 1 cut(s) 2641
PaeI GCATGC 1 cut(s) 2641
PaeR7I CTCGAG 1 cut(s) 153
PagI TCATGA 1 cut(s) 1831
PceI AGGCCT 3 cut(s) 2352, 2380, 2460
PciSI GCTCTTC 1 cut(s) 426
PctI GAATGC 5 cut(s) 1817, 2027, 2564, 2575, 2673
PdiI GCCGGC 1 cut(s) 384
PdmI GAANNNNTTC 2 cut(s) 335, 374
PfeI GAWTC 5 cut(s) 285, 517, 1151, 1282, 2660
PkrI GCNGC 2 cut(s) 1646, 2063
PleI GAGTC 5 cut(s) 250, 266, 1077, 1215, 2411
PpsI GAGTC 5 cut(s) 250, 266, 1077, 1215, 2411
Ppu21I YACGTR 1 cut(s) 2722
PpuMI RGGWCCY 1 cut(s) 62
PshAI GACNNNNGTC 1 cut(s) 1179
PshBI ATTAAT 2 cut(s) 831, 1992
Psp1406I AACGTT 2 cut(s) 1563, 2713
Psp5II RGGWCCY 1 cut(s) 62
PspEI GGTNACC 2 cut(s) 173, 1126
PspN4I GGNNCC 4 cut(s) 63, 1116, 1326, 1962
PspPI GGNCC 4 cut(s) 62, 380, 1325, 2143
PspPPI RGGWCCY 1 cut(s) 62
PstI CTGCAG 1 cut(s) 2510
PsuI RGATCY 1 cut(s) 2629
RsaI GTAC 5 cut(s) 1454, 1807, 1868, 2166, 2595
RsaNI GTAC 5 cut(s) 1453, 1806, 1867, 2165, 2594
RseI CAYNNNNRTG 2 cut(s) 1142, 1215
SapI GCTCTTC 1 cut(s) 426
SatI GCNGC 2 cut(s) 1645, 2062
Sau96I GGNCC 4 cut(s) 62, 380, 1325, 2143
ScaI AGTACT 1 cut(s) 1807
SchI GAGTC 5 cut(s) 250, 266, 1077, 1216, 2411
SduI GDGCHC 1 cut(s) 1488
SfaNI GCATC 6 cut(s) 1511, 1568, 1594, 1909, 2183, 2650
SfcI CTRYAG 2 cut(s) 2259, 2506
Sfr274I CTCGAG 1 cut(s) 153
SinI GGWCC 2 cut(s) 62, 1325
SlaI CTCGAG 1 cut(s) 153
SmiMI CAYNNNNRTG 2 cut(s) 1142, 1215
SmlI CTYRAG 5 cut(s) 153, 1316, 2039, 2204, 2462
SmoI CTYRAG 5 cut(s) 153, 1316, 2039, 2204, 2462
SphI GCATGC 1 cut(s) 2641
SseBI AGGCCT 3 cut(s) 2352, 2380, 2460
SsiI CCGC 3 cut(s) 791, 1044, 2762
SspI AATATT 1 cut(s) 1654
SspMI CTAG 3 cut(s) 1439, 2018, 2555
StuI AGGCCT 3 cut(s) 2352, 2380, 2460
StyI CCWWGG 1 cut(s) 1293
TaaI ACNGT 5 cut(s) 928, 1098, 2089, 2169, 2593
TaiI ACGT 5 cut(s) 1454, 1566, 2084, 2716, 2724
TaqI TCGA 5 cut(s) 154, 302, 958, 1068, 1362
TatI WGTACW 4 cut(s) 1805, 1866, 2164, 2593
TfiI GAWTC 5 cut(s) 285, 517, 1151, 1282, 2660
TscAI CASTG 6 cut(s) 850, 873, 931, 1362, 2174, 2368
TseFI GTSAC 5 cut(s) 161, 173, 797, 1552, 2737
TseI GCWGC 2 cut(s) 1644, 2061
Tsp45I GTSAC 5 cut(s) 161, 173, 797, 1552, 2737
TspRI CASTG 6 cut(s) 850, 873, 931, 1362, 2174, 2368
Vha464I CTTAAG 1 cut(s) 2039
VneI GTGCAC 1 cut(s) 1484
VpaK11BI GGWCC 2 cut(s) 62, 1325
VspI ATTAAT 2 cut(s) 831, 1992
XapI RAATTY 3 cut(s) 80, 805, 1496
XceI RCATGY 1 cut(s) 2641
XhoI CTCGAG 1 cut(s) 153
XmnI GAANNNNTTC 2 cut(s) 335, 374
XspI CTAG 3 cut(s) 1439, 2018, 2555
ZrmI AGTACT 1 cut(s) 1807
Zsp2I ATGCAT 3 cut(s) 2029, 2639, 2643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.