Pentatricopeptide repeat-containing protein At5g65560-like
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g41080 FvH4_6g41080 FvH4_6g41080 |
| malus_domestica | MD09G1122300.v1.1 |
| prunus_persica | Prupe.3G201200_v2.0.a1 |
| pyrus_communis | pycom09g04670 |
| rosa_chinensis | RchiOBHm_Chr2g0156641 |
| rosa_laevigata | RLG00000020927 |
| rosa_multiflora | Rmu_sc0018228.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00092880 |
| rosa_rugosa | Rorug02G0454900 |
| rosa_samantha | Rh2AG520600 Rh2BG533700 Rh2CG505600 Rh2DG542500 |
| rosa_wichuraiana | Rw2G042950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1670, 2475 |
| Acc36I | ACCTGC | 2 cut(s) | 782, 1469 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1831 |
| AccI | GTMKAC | 1 cut(s) | 1862 |
| AciI | CCGC | 2 cut(s) | 1779, 2513 |
| AcoI | YGGCCR | 1 cut(s) | 2694 |
| AcsI | RAATTY | 3 cut(s) | 80, 805, 2398 |
| AcuI | CTGAAG | 1 cut(s) | 2624 |
| AdeI | CACNNNGTG | 1 cut(s) | 947 |
| AfaI | GTAC | 4 cut(s) | 2269, 2290, 2395, 2772 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 145, 184, 1123, 1516, 1831, 2361 |
| AflIII | ACRYGT | 1 cut(s) | 1764 |
| AjiI | CACGTC | 1 cut(s) | 1767 |
| AjnI | CCWGG | 2 cut(s) | 567, 1176 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1094, 1126 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2442, 2474 |
| Alw21I | GWGCWC | 3 cut(s) | 197, 204, 2494 |
| Alw26I | GTCTC | 8 cut(s) | 248, 301, 1056, 1154, 1201, 1773, 1913, 2379 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2119 |
| AoxI | GGCC | 6 cut(s) | 951, 1780, 2060, 2145, 2344, 2694 |
| ApeKI | GCWGC | 4 cut(s) | 333, 1556, 2055, 2172 |
| ApoI | RAATTY | 3 cut(s) | 80, 805, 2398 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1519, 1551, 2095, 2127 |
| AseI | ATTAAT | 1 cut(s) | 1278 |
| AspLEI | GCGC | 2 cut(s) | 382, 2419 |
| AspS9I | GGNCC | 5 cut(s) | 1114, 1215, 1319, 2061, 2146 |
| AsuC2I | CCSGG | 1 cut(s) | 698 |
| AsuHPI | GGTGA | 3 cut(s) | 26, 796, 2192 |
| AvaII | GGWCC | 3 cut(s) | 1114, 1215, 1319 |
| BaeGI | GKGCMC | 1 cut(s) | 2354 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1354, 1387, 2259, 2292 |
| BalI | TGGCCA | 1 cut(s) | 2696 |
| BanII | GRGCYC | 3 cut(s) | 197, 204, 218 |
| Bbv12I | GWGCWC | 3 cut(s) | 197, 204, 2494 |
| BbvI | GCAGC | 4 cut(s) | 320, 1543, 2042, 2184 |
| BceAI | ACGGC | 2 cut(s) | 386, 2066 |
| BciT130I | CCWGG | 2 cut(s) | 569, 1178 |
| BciVI | GTATCC | 2 cut(s) | 1355, 1565 |
| BclI | TGATCA | 1 cut(s) | 1038 |
| BcnI | CCSGG | 1 cut(s) | 698 |
| BcoDI | GTCTC | 8 cut(s) | 248, 301, 1056, 1154, 1201, 1773, 1913, 2379 |
| BfaI | CTAG | 4 cut(s) | 420, 2012, 2223, 2546 |
| BfmI | CTRYAG | 2 cut(s) | 384, 2056 |
| BfuAI | ACCTGC | 2 cut(s) | 782, 1469 |
| BfuI | GTATCC | 2 cut(s) | 1355, 1565 |
| BglII | AGATCT | 1 cut(s) | 2620 |
| BisI | GCNGC | 5 cut(s) | 334, 1557, 1780, 2056, 2173 |
| BlpI | GCTNAGC | 2 cut(s) | 203, 212 |
| BlsI | GCNGC | 5 cut(s) | 335, 1558, 1781, 2057, 2174 |
| Bme1390I | CCNGG | 3 cut(s) | 569, 698, 1178 |
| Bme18I | GGWCC | 3 cut(s) | 1114, 1215, 1319 |
| BmgBI | CACGTC | 1 cut(s) | 1767 |
| BmgT120I | GGNCC | 5 cut(s) | 1114, 1215, 1319, 2061, 2146 |
| BmiI | GGNNCC | 6 cut(s) | 64, 1116, 1216, 1320, 1746, 1956 |
| BmrFI | CCNGG | 3 cut(s) | 569, 698, 1178 |
| BmrI | ACTGGG | 2 cut(s) | 304, 1533 |
| BmsI | GCATC | 2 cut(s) | 95, 1505 |
| BmuI | ACTGGG | 2 cut(s) | 304, 1533 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 203, 212 |
| BpuMI | CCSGG | 1 cut(s) | 698 |
| Bsa29I | ATCGAT | 1 cut(s) | 2592 |
| BsaAI | YACGTR | 1 cut(s) | 816 |
| BsaI | GGTCTC | 2 cut(s) | 248, 301 |
| BsaJI | CCNNGG | 2 cut(s) | 567, 1218 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 30, 60, 1411, 1441 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 145, 184, 1123, 1516, 1831, 2361 |
| Bse1I | ACTGG | 4 cut(s) | 299, 873, 1539, 1746 |
| Bse3DI | GCAATG | 2 cut(s) | 850, 1293 |
| BseBI | CCWGG | 2 cut(s) | 569, 1178 |
| BseCI | ATCGAT | 1 cut(s) | 2592 |
| BseDI | CCNNGG | 2 cut(s) | 567, 1218 |
| BseGI | GGATG | 8 cut(s) | 118, 706, 865, 1009, 1111, 1430, 2232, 2246 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 145, 184, 1123, 1516, 1831, 2361 |
| BseMI | GCAATG | 2 cut(s) | 850, 1293 |
| BseMII | CTCAG | 7 cut(s) | 203, 210, 217, 1067, 1381, 1698, 1908 |
| BseNI | ACTGG | 4 cut(s) | 299, 873, 1539, 1746 |
| BseRI | GAGGAG | 1 cut(s) | 1640 |
| BseSI | GKGCMC | 1 cut(s) | 2354 |
| BseXI | GCAGC | 4 cut(s) | 320, 1543, 2042, 2184 |
| Bsh1285I | CGRYCG | 1 cut(s) | 958 |
| BshFI | GGCC | 6 cut(s) | 953, 1782, 2062, 2147, 2346, 2696 |
| BshVI | ATCGAT | 1 cut(s) | 2592 |
| BsiEI | CGRYCG | 1 cut(s) | 958 |
| BsiHKAI | GWGCWC | 3 cut(s) | 197, 204, 2494 |
| BsiSI | CCGG | 1 cut(s) | 698 |
| BslFI | GGGAC | 5 cut(s) | 914, 1100, 1228, 1332, 1521 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 145, 184, 1123, 1516, 1831, 2361 |
| BsmAI | GTCTC | 8 cut(s) | 248, 301, 1056, 1154, 1201, 1773, 1913, 2379 |
| BsmBI | CGTCTC | 2 cut(s) | 1773, 1913 |
| BsmFI | GGGAC | 5 cut(s) | 914, 1100, 1228, 1332, 1521 |
| BsmI | GAATGC | 2 cut(s) | 1811, 2021 |
| BsnI | GGCC | 6 cut(s) | 953, 1782, 2062, 2147, 2346, 2696 |
| Bso31I | GGTCTC | 2 cut(s) | 248, 301 |
| Bsp1286I | GDGCHC | 5 cut(s) | 197, 204, 218, 2354, 2494 |
| Bsp1407I | TGTACA | 2 cut(s) | 2288, 2770 |
| Bsp143I | GATC | 7 cut(s) | 232, 775, 955, 1038, 2014, 2314, 2620 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 203, 212 |
| BspACI | CCGC | 2 cut(s) | 1779, 2513 |
| BspANI | GGCC | 6 cut(s) | 953, 1782, 2062, 2147, 2346, 2696 |
| BspCNI | CTCAG | 7 cut(s) | 204, 209, 216, 1066, 1380, 1699, 1909 |
| BspDI | ATCGAT | 1 cut(s) | 2592 |
| BspLI | GGNNCC | 6 cut(s) | 64, 1116, 1216, 1320, 1746, 1956 |
| BspMAI | CTGCAG | 2 cut(s) | 388, 2060 |
| BspMI | ACCTGC | 2 cut(s) | 782, 1469 |
| BspQI | GCTCTTC | 1 cut(s) | 426 |
| BspTNI | GGTCTC | 2 cut(s) | 248, 301 |
| BsrDI | GCAATG | 2 cut(s) | 850, 1293 |
| BsrGI | TGTACA | 2 cut(s) | 2288, 2770 |
| BsrI | ACTGG | 4 cut(s) | 299, 873, 1539, 1746 |
| BssECI | CCNNGG | 2 cut(s) | 567, 1218 |
| BssMI | GATC | 7 cut(s) | 232, 775, 955, 1038, 2014, 2314, 2620 |
| BssNAI | GTATAC | 1 cut(s) | 1863 |
| BssT1I | CCWWGG | 1 cut(s) | 1218 |
| Bst1107I | GTATAC | 1 cut(s) | 1863 |
| Bst2UI | CCWGG | 2 cut(s) | 569, 1178 |
| Bst4CI | ACNGT | 7 cut(s) | 392, 928, 1018, 1126, 1577, 2254, 2584 |
| Bst6I | CTCTTC | 1 cut(s) | 426 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1005 |
| BstAUI | TGTACA | 2 cut(s) | 2288, 2770 |
| BstBAI | YACGTR | 1 cut(s) | 816 |
| BstC8I | GCNNGC | 5 cut(s) | 209, 384, 1850, 2060, 2543 |
| BstEII | GGTNACC | 2 cut(s) | 1126, 1546 |
| BstF5I | GGATG | 8 cut(s) | 118, 706, 865, 1009, 1111, 1430, 2232, 2246 |
| BstHHI | GCGC | 2 cut(s) | 382, 2419 |
| BstKTI | GATC | 7 cut(s) | 235, 778, 958, 1041, 2017, 2317, 2623 |
| BstMAI | GTCTC | 8 cut(s) | 248, 301, 1056, 1154, 1201, 1773, 1913, 2379 |
| BstMBI | GATC | 7 cut(s) | 232, 775, 955, 1038, 2014, 2314, 2620 |
| BstMCI | CGRYCG | 1 cut(s) | 958 |
| BstNI | CCWGG | 2 cut(s) | 569, 1178 |
| BstNSI | RCATGY | 1 cut(s) | 2545 |
| BstPI | GGTNACC | 2 cut(s) | 1126, 1546 |
| BstSCI | CCNGG | 3 cut(s) | 567, 696, 1176 |
| BstSFI | CTRYAG | 2 cut(s) | 384, 2056 |
| BstSLI | GKGCMC | 1 cut(s) | 2354 |
| BstSNI | TACGTA | 1 cut(s) | 816 |
| BstV1I | GCAGC | 4 cut(s) | 320, 1543, 2042, 2184 |
| BstX2I | RGATCY | 1 cut(s) | 2620 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1440 |
| BstYI | RGATCY | 1 cut(s) | 2620 |
| BstZ17I | GTATAC | 1 cut(s) | 1863 |
| Bsu15I | ATCGAT | 1 cut(s) | 2592 |
| BsuI | GTATCC | 2 cut(s) | 1355, 1565 |
| BsuRI | GGCC | 6 cut(s) | 953, 1782, 2062, 2147, 2346, 2696 |
| BsuTUI | ATCGAT | 1 cut(s) | 2592 |
| BtrI | CACGTC | 1 cut(s) | 1767 |
| BtsCI | GGATG | 8 cut(s) | 118, 706, 865, 1009, 1111, 1430, 2232, 2246 |
| BtsIMutI | CAGTG | 4 cut(s) | 866, 924, 1048, 1375 |
| BveI | ACCTGC | 2 cut(s) | 782, 1469 |
| Cac8I | GCNNGC | 5 cut(s) | 209, 384, 1850, 2060, 2543 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2119 |
| CfoI | GCGC | 2 cut(s) | 382, 2419 |
| Cfr13I | GGNCC | 5 cut(s) | 1114, 1215, 1319, 2061, 2146 |
| ClaI | ATCGAT | 1 cut(s) | 2592 |
| Csp6I | GTAC | 4 cut(s) | 2268, 2289, 2394, 2771 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1966, 2001 |
| CviQI | GTAC | 4 cut(s) | 2268, 2289, 2394, 2771 |
| DpnI | GATC | 7 cut(s) | 234, 777, 957, 1040, 2016, 2316, 2622 |
| DpnII | GATC | 7 cut(s) | 232, 775, 955, 1038, 2014, 2314, 2620 |
| DraI | TTTAAA | 2 cut(s) | 2403, 2763 |
| DraIII | CACNNNGTG | 1 cut(s) | 947 |
| EaeI | YGGCCR | 1 cut(s) | 2694 |
| Eam1104I | CTCTTC | 1 cut(s) | 426 |
| EarI | CTCTTC | 1 cut(s) | 426 |
| EciI | GGCGGA | 1 cut(s) | 2528 |
| Ecl136II | GAGCTC | 2 cut(s) | 195, 202 |
| Eco105I | TACGTA | 1 cut(s) | 816 |
| Eco130I | CCWWGG | 1 cut(s) | 1218 |
| Eco147I | AGGCCT | 1 cut(s) | 2346 |
| Eco24I | GRGCYC | 3 cut(s) | 197, 204, 218 |
| Eco31I | GGTCTC | 2 cut(s) | 248, 301 |
| Eco32I | GATATC | 1 cut(s) | 2689 |
| Eco47I | GGWCC | 3 cut(s) | 1114, 1215, 1319 |
| Eco53kI | GAGCTC | 2 cut(s) | 195, 202 |
| Eco57I | CTGAAG | 1 cut(s) | 2624 |
| Eco91I | GGTNACC | 2 cut(s) | 1126, 1546 |
| EcoICRI | GAGCTC | 2 cut(s) | 195, 202 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1215 |
| EcoO65I | GGTNACC | 2 cut(s) | 1126, 1546 |
| EcoRI | GAATTC | 2 cut(s) | 80, 805 |
| EcoRII | CCWGG | 2 cut(s) | 567, 1176 |
| EcoRV | GATATC | 1 cut(s) | 2689 |
| EcoT14I | CCWWGG | 1 cut(s) | 1218 |
| EcoT22I | ATGCAT | 2 cut(s) | 2023, 2630 |
| EcoT38I | GRGCYC | 3 cut(s) | 197, 204, 218 |
| ErhI | CCWWGG | 1 cut(s) | 1218 |
| Esp3I | CGTCTC | 2 cut(s) | 1773, 1913 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1475, 1507 |
| FaqI | GGGAC | 5 cut(s) | 914, 1100, 1228, 1332, 1521 |
| FauNDI | CATATG | 3 cut(s) | 2077, 2331, 2683 |
| FbaI | TGATCA | 1 cut(s) | 1038 |
| FblI | GTMKAC | 1 cut(s) | 1862 |
| Fnu4HI | GCNGC | 5 cut(s) | 334, 1557, 1780, 2056, 2173 |
| FokI | GGATG | 8 cut(s) | 105, 713, 872, 996, 1118, 1437, 2239, 2253 |
| FriOI | GRGCYC | 3 cut(s) | 197, 204, 218 |
| Fsp4HI | GCNGC | 5 cut(s) | 334, 1557, 1780, 2056, 2173 |
| FspBI | CTAG | 4 cut(s) | 420, 2012, 2223, 2546 |
| GlaI | GCGC | 2 cut(s) | 381, 2418 |
| GluI | GCNGC | 5 cut(s) | 334, 1557, 1780, 2056, 2173 |
| HaeIII | GGCC | 6 cut(s) | 953, 1782, 2062, 2147, 2346, 2696 |
| HapII | CCGG | 1 cut(s) | 698 |
| HhaI | GCGC | 2 cut(s) | 382, 2419 |
| Hin6I | GCGC | 2 cut(s) | 380, 2417 |
| HinP1I | GCGC | 2 cut(s) | 380, 2417 |
| HincII | GTYRAC | 2 cut(s) | 603, 2746 |
| HindII | GTYRAC | 2 cut(s) | 603, 2746 |
| HindIII | AAGCTT | 4 cut(s) | 98, 414, 1094, 2633 |
| HinfI | GANTC | 7 cut(s) | 272, 285, 517, 724, 1083, 2411, 2651 |
| HpaI | GTTAAC | 1 cut(s) | 2746 |
| HpaII | CCGG | 1 cut(s) | 698 |
| HphI | GGTGA | 3 cut(s) | 26, 796, 2192 |
| Hpy188I | TCNGA | 7 cut(s) | 199, 780, 986, 1056, 1489, 2233, 2620 |
| Hpy188III | TCNNGA | 5 cut(s) | 90, 650, 1895, 1958, 2677 |
| HpyCH4III | ACNGT | 7 cut(s) | 392, 928, 1018, 1126, 1577, 2254, 2584 |
| HpyCH4IV | ACGT | 3 cut(s) | 815, 1766, 1922 |
| HpySE526I | ACGT | 3 cut(s) | 815, 1766, 1922 |
| HspAI | GCGC | 2 cut(s) | 380, 2417 |
| Ksp22I | TGATCA | 1 cut(s) | 1038 |
| KspAI | GTTAAC | 1 cut(s) | 2746 |
| Kzo9I | GATC | 7 cut(s) | 232, 775, 955, 1038, 2014, 2314, 2620 |
| LguI | GCTCTTC | 1 cut(s) | 426 |
| LmnI | GCTCC | 2 cut(s) | 699, 1960 |
| Lsp1109I | GCAGC | 4 cut(s) | 320, 1543, 2042, 2184 |
| LweI | GCATC | 2 cut(s) | 95, 1505 |
| MaeI | CTAG | 4 cut(s) | 420, 2012, 2223, 2546 |
| MaeII | ACGT | 3 cut(s) | 815, 1766, 1922 |
| MaeIII | GTNAC | 9 cut(s) | 161, 445, 746, 797, 811, 1126, 1271, 1546, 1966 |
| MalI | GATC | 7 cut(s) | 234, 777, 957, 1040, 2016, 2316, 2622 |
| MboI | GATC | 7 cut(s) | 232, 775, 955, 1038, 2014, 2314, 2620 |
| MfeI | CAATTG | 3 cut(s) | 521, 933, 972 |
| MflI | RGATCY | 1 cut(s) | 2620 |
| MhlI | GDGCHC | 5 cut(s) | 197, 204, 218, 2354, 2494 |
| MlsI | TGGCCA | 1 cut(s) | 2696 |
| MluCI | AATT | 9 cut(s) | 80, 521, 805, 933, 972, 1530, 1773, 2398, 2739 |
| MluNI | TGGCCA | 1 cut(s) | 2696 |
| MlyI | GAGTC | 2 cut(s) | 266, 1077 |
| MmeI | TCCRAC | 1 cut(s) | 1383 |
| Mox20I | TGGCCA | 1 cut(s) | 2696 |
| Mph1103I | ATGCAT | 2 cut(s) | 2023, 2630 |
| MscI | TGGCCA | 1 cut(s) | 2696 |
| Msp20I | TGGCCA | 1 cut(s) | 2696 |
| MspA1I | CMGCKG | 1 cut(s) | 207 |
| MspI | CCGG | 1 cut(s) | 698 |
| MspR9I | CCNGG | 3 cut(s) | 569, 698, 1178 |
| MunI | CAATTG | 3 cut(s) | 521, 933, 972 |
| Mva1269I | GAATGC | 2 cut(s) | 1811, 2021 |
| MvaI | CCWGG | 2 cut(s) | 569, 1178 |
| NciI | CCSGG | 1 cut(s) | 698 |
| NdeI | CATATG | 3 cut(s) | 2077, 2331, 2683 |
| NdeII | GATC | 7 cut(s) | 232, 775, 955, 1038, 2014, 2314, 2620 |
| NlaIV | GGNNCC | 6 cut(s) | 64, 1116, 1216, 1320, 1746, 1956 |
| NmeAIII | GCCGAG | 2 cut(s) | 254, 2475 |
| NmuCI | GTSAC | 2 cut(s) | 161, 797 |
| NsiI | ATGCAT | 2 cut(s) | 2023, 2630 |
| NspI | RCATGY | 1 cut(s) | 2545 |
| PaeI | GCATGC | 1 cut(s) | 2545 |
| PceI | AGGCCT | 1 cut(s) | 2346 |
| PciSI | GCTCTTC | 1 cut(s) | 426 |
| PctI | GAATGC | 2 cut(s) | 1811, 2021 |
| PfeI | GAWTC | 5 cut(s) | 285, 517, 724, 2411, 2651 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1831 |
| PfoI | TCCNGGA | 1 cut(s) | 696 |
| PkrI | GCNGC | 5 cut(s) | 335, 1558, 1781, 2057, 2174 |
| Ple19I | CGATCG | 1 cut(s) | 958 |
| PleI | GAGTC | 2 cut(s) | 266, 1077 |
| PpsI | GAGTC | 2 cut(s) | 266, 1077 |
| Ppu21I | YACGTR | 1 cut(s) | 816 |
| PpuMI | RGGWCCY | 1 cut(s) | 1215 |
| PshBI | ATTAAT | 1 cut(s) | 1278 |
| PsiI | TTATAA | 2 cut(s) | 1670, 2475 |
| Psp124BI | GAGCTC | 2 cut(s) | 197, 204 |
| Psp5II | RGGWCCY | 1 cut(s) | 1215 |
| Psp6I | CCWGG | 2 cut(s) | 567, 1176 |
| PspEI | GGTNACC | 2 cut(s) | 1126, 1546 |
| PspGI | CCWGG | 2 cut(s) | 567, 1176 |
| PspN4I | GGNNCC | 6 cut(s) | 64, 1116, 1216, 1320, 1746, 1956 |
| PspPI | GGNCC | 5 cut(s) | 1114, 1215, 1319, 2061, 2146 |
| PspPPI | RGGWCCY | 1 cut(s) | 1215 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2716, 2748 |
| PstI | CTGCAG | 2 cut(s) | 388, 2060 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2119 |
| PsuI | RGATCY | 1 cut(s) | 2620 |
| PvuI | CGATCG | 1 cut(s) | 958 |
| PvuII | CAGCTG | 1 cut(s) | 207 |
| RsaI | GTAC | 4 cut(s) | 2269, 2290, 2395, 2772 |
| RsaNI | GTAC | 4 cut(s) | 2268, 2289, 2394, 2771 |
| SacI | GAGCTC | 2 cut(s) | 197, 204 |
| SapI | GCTCTTC | 1 cut(s) | 426 |
| SatI | GCNGC | 5 cut(s) | 334, 1557, 1780, 2056, 2173 |
| Sau3AI | GATC | 7 cut(s) | 232, 775, 955, 1038, 2014, 2314, 2620 |
| Sau96I | GGNCC | 5 cut(s) | 1114, 1215, 1319, 2061, 2146 |
| SchI | GAGTC | 2 cut(s) | 266, 1077 |
| ScrFI | CCNGG | 3 cut(s) | 569, 698, 1178 |
| SduI | GDGCHC | 5 cut(s) | 197, 204, 218, 2354, 2494 |
| SfaNI | GCATC | 2 cut(s) | 95, 1505 |
| SfcI | CTRYAG | 2 cut(s) | 384, 2056 |
| SinI | GGWCC | 3 cut(s) | 1114, 1215, 1319 |
| SnaBI | TACGTA | 1 cut(s) | 816 |
| SphI | GCATGC | 1 cut(s) | 2545 |
| Sse9I | AATT | 9 cut(s) | 80, 521, 805, 933, 972, 1530, 1773, 2398, 2739 |
| SseBI | AGGCCT | 1 cut(s) | 2346 |
| SsiI | CCGC | 2 cut(s) | 1779, 2513 |
| SspI | AATATT | 1 cut(s) | 455 |
| SspMI | CTAG | 4 cut(s) | 420, 2012, 2223, 2546 |
| SstI | GAGCTC | 2 cut(s) | 197, 204 |
| StuI | AGGCCT | 1 cut(s) | 2346 |
| StyD4I | CCNGG | 3 cut(s) | 567, 696, 1176 |
| StyI | CCWWGG | 1 cut(s) | 1218 |
| TaaI | ACNGT | 7 cut(s) | 392, 928, 1018, 1126, 1577, 2254, 2584 |
| TaiI | ACGT | 3 cut(s) | 818, 1769, 1925 |
| TaqI | TCGA | 3 cut(s) | 78, 1068, 2592 |
| TasI | AATT | 9 cut(s) | 80, 521, 805, 933, 972, 1530, 1773, 2398, 2739 |
| TatI | WGTACW | 2 cut(s) | 2288, 2770 |
| TauI | GCSGC | 1 cut(s) | 1782 |
| TfiI | GAWTC | 5 cut(s) | 285, 517, 724, 2411, 2651 |
| TscAI | CASTG | 4 cut(s) | 873, 931, 1048, 1375 |
| TseFI | GTSAC | 2 cut(s) | 161, 797 |
| TseI | GCWGC | 4 cut(s) | 333, 1556, 2055, 2172 |
| Tsp45I | GTSAC | 2 cut(s) | 161, 797 |
| TspGWI | ACGGA | 3 cut(s) | 149, 1499, 2138 |
| TspRI | CASTG | 4 cut(s) | 873, 931, 1048, 1375 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1831 |
| VpaK11BI | GGWCC | 3 cut(s) | 1114, 1215, 1319 |
| VspI | ATTAAT | 1 cut(s) | 1278 |
| XapI | RAATTY | 3 cut(s) | 80, 805, 2398 |
| XceI | RCATGY | 1 cut(s) | 2545 |
| XmiI | GTMKAC | 1 cut(s) | 1862 |
| XspI | CTAG | 4 cut(s) | 420, 2012, 2223, 2546 |
| Zsp2I | ATGCAT | 2 cut(s) | 2023, 2630 |