MD09G1122300.v1.1

Pentatricopeptide repeat-containing protein At5g65560-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015670
Physical Location & Seq
Reverse (-)
9433949 .. 9439002
5054 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1122300.v1.1.491

Sequence Viewer

Length: 2745 bp
ATGTTAAAGCCCCTCCAAACCCTCCGCTCTCTATTGGGTTCCGACCATTTTCTCAAATTCTCAACAAGAACCAGGCTTTTCTCCGAACCCGCTCAACCCTCCAAACCTTTCCCGGACTTGGTCGCCAGAATCTGCGACATTTTGAGCGACCCCCAATGGGAACGGAGCTCGGAGCTCAGCTGGCTGGGACCCGAGCTCAGAACCCATCACGTGTCGAAGATCATCGAGTCCCACCGTAACACTGACTCGGCGTTGAGATTCTTCTACTGGATTTCTAAGAGGCATTTTTACAAACACGATATGGGCTGCTTCTCGTCAATGCTTAATCGGCTTGTGAGGGAGCGGCTTTTTGCGCCTGCGGATCGTGTGAGGATTTTAATGATCAAGGCTTGTAGGAAGGAGGAAGAGCTCAAATGGGTAATTGAGTATTTGAATGATTTGAATAGACTTGGTTTTCAGTTTACATTGTTTAGTTTTAATACGCTTTTGATACAATTGGGAAAGTTCGAGATGGTTAGTGTAGCTCGAAATGTTTATACTCAGATGCTTAATAGTGGGATTAGACCAAGTTTGTTGACATTTAATACAATGATCAATATATTGTGTAAGAAAGGCAGGGTTCAGGAAGCAGAGGTGATTTTGAGCCGGATTTTTCAGTTCGATATTTTCCCGGATGTTTTTACTTATACATCGTTGATTCTTGGGCATTGTAGAAATCGTAAGGTGAATTTGGCATTTGACGTTTATGATCAGATGGTGAAGGCAGGTTGTGACCCCAATTCGGTTACGTATTCAACTCTTATCAATGGGCTATGCAATGAGGGAAAGGTGGATGAGGCACTGGATATGCTTGATGAAATGGTAGAGAAAGGGATTGAACCCACAGTATTTACTTACACTGTCCCAATTACTTCACTATGTGAGGCCAATCGACTGGTGGAAGCAATTGGGCTTTTCAGAAGTATGAGGAGCAGGGGTTGCCATCCTAACGTTCATACTTATACAGCATTGATCAGCGGGTTGTCTCAGACAGGAAAACTCAATGTTGCTGTTGGACTCTATCACAAACTTGTGAAGGACGGTTTGGTCCCAAACACGGTTACCTTCAATACATTGATAAATGAATTATGTGAGACAGGAAGATATGGCATGGCTCAGAAGATTTTTTATTGGATGGAAAGACATGGTACCTTGTCAAATACCCAAACACACAATGGAATCATCAAGGTTTTCTGTTTGATAGGTAACGTTAATAAGGCAATGACGCTTTTAAGCAAAATGCTGAAAGTGGGACCCTCTCCAAATGTGATTACTTATAACACACTTATCAATGCATACCTTGATGGGGGTAAATTAAACAATGCAGTGAGGTTATTGGATTTGATGAAATGGAGTGGATGTGAACCAGATGAATGGACTTATACTGAACTTATTTCTGGGTTATGCAAGGCGGGTAAGTCTGAAGAGGCATCTACTATTTTCCATGAGATGGTAGAACAAGGCATTCGTCCCAATCAGGTCACTTACACTGCTTTGATTGCTGGATATTGTGCGGAGGGGAAGGTAGATGCTGCATTGGCATTATTTGAGCGGATGGAGGAGGATGGTTGCTGTCCGGGTATTGAAACCTACAATACCATTATAAGTGGTTTGTGCAATGATAATCAGATTGAAAAAGCTAAAAAATTATGTACAAAGATGGGGGAGCAAGGACTGGCTCCAAATGTCATTACCTACACGTCTCTAATTAGGTGCCTCTGTGGGAATGGCAGTACTGACGTTGCATTCCAAATCTACCATGAAATGGGAAAGCAGGGTTGCTTGCCGAACTTGTATACATATAGTTCACTCATTTTTGGGTTATGTCGTGAGGGTAAGGTTGATGATGCTGAGAGGTTACTTAAAGAAATGGATCAGAAAGGATTGGTTCCTGATGAGGTAACATATACCACACTCATTGATGGATTTGTTATACTTGGCAAGCTAGATCATGCGTTTCTGCTCCTTAGGCGAATGGTTGATGTTGGCTGCAAGCCCAACTACCGAACTTATTCTGTGTTGGTCAAGGGGTTGCAAAGGGAAAGCCAGTTGCTGACAGAGAATGTTGTGGGCCTTGAGTCCCAACATGAAGAAATGTATAGTTGCAGCTCTGATGAGAGCTATACCTCTATTGAGGTGTTGTGTAATCTCTTAGCTAGGATGTCAGAGTATGGATGTGAACCAACTGTTCATACCTATGACATTTTAGTGAGAGGCTTGTGCAGAGATGGTAGATATTATGAGGCGGATCAGTTGCTGCAGCATATGAAAGATAAAGGGTTCTGCCCCACTAATAAGATTTATCTGTCTCTGTTCTTTGTTTATTGTATGAATTTGAAAGTGGATTCTGCGCTGGAAATTTTTGGTTTGATGGCAGATAGGGGATTTGAGGTACACTTATCATCTTATAAGGCACTTATTAGTGTCCTCTGCAGGGTGAGTCGAGTGGAAGAAGCTGAAACATTATTCAGAAGGATGCTAGAGAAACAATGGAATACTGATGAGATTGTTTGGACTGTGTTAATTGATGGGTTACTGAAGGAAGGGAATTCAGATTTATGCATGAAGTTTCTTCATGTTATTGAATCTGAAAAATGCAGTATCAGTACCCAGACGTATGTTATTTTGGCCAGAGAACTTTCTAAAATAAACGAGACTGTGGTGACTTCTCAAATTGTTAACAAAGATTTGAAGGATGTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

915

Amino Acids

103.81

Weight (kDa)

6.35

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 157 - 203 3e-07 PPR repeat family
PPR_1 PF12854 186 - 215 6.4e-08 PPR repeat
PPR_2 PF13041 189 - 238 4.3e-11 PPR repeat family
PPR_3 PF13812 220 - 269 3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 221 - 253 3.1e-09 PPR repeat
PPR_2 PF13041 224 - 273 1.2e-20 PPR repeat family
PPR PF01535 227 - 257 2.1e-06 PPR repeat
TPR_24 PF23276 238 - 356 3e-09 Fungal tetratrico peptide repeats
PPR_long PF17177 243 - 345 7.1e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 256 - 288 5.2e-16 PPR repeat
PPR PF01535 262 - 292 1.9e-10 PPR repeat
PPR_3 PF13812 262 - 301 6.6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 262 - 307 4.2e-17 PPR repeat family
PPR_1 PF12854 290 - 323 3.8e-07 PPR repeat
PPR_2 PF13041 303 - 342 4.3e-11 PPR repeat family
PPR_3 PF13812 318 - 374 2.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 325 - 355 3.3e-06 PPR repeat
PPR_2 PF13041 334 - 377 9.3e-11 PPR repeat family
PPR_long PF17177 342 - 489 9.9e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 360 - 389 7.5e-07 PPR repeat
PPR_2 PF13041 364 - 412 9.6e-12 PPR repeat family
PPR_3 PF13812 388 - 446 7.3e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 405 - 446 1.3e-08 PPR repeat family
PPR_1 PF12854 431 - 463 3.3e-08 PPR repeat
PPR_2 PF13041 434 - 483 4.2e-17 PPR repeat family
PPR PF01535 437 - 467 8e-06 PPR repeat
PPR_3 PF13812 457 - 509 1.7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 466 - 498 7.9e-11 PPR repeat
PPR PF01535 473 - 502 1.8e-07 PPR repeat
PPR_2 PF13041 473 - 515 7.7e-13 PPR repeat family
TPR_24 PF23276 484 - 570 3.2e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 490 - 574 6.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 493 - 549 4.8e-16 Pentatricopeptide repeat domain
PPR_1 PF12854 501 - 533 8.4e-12 PPR repeat
PPR_2 PF13041 504 - 553 4.6e-17 PPR repeat family
PPR PF01535 507 - 537 2.5e-09 PPR repeat
PPR_1 PF12854 535 - 567 5.4e-09 PPR repeat
PPR_2 PF13041 539 - 587 8e-16 PPR repeat family
PPR_3 PF13812 563 - 618 1e-11 Pentatricopeptide repeat domain
PPR_long PF17177 565 - 653 3.2e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 571 - 602 8.2e-09 PPR repeat
PPR_2 PF13041 579 - 623 9.8e-14 PPR repeat family
PPR_1 PF12854 606 - 637 1e-14 PPR repeat
PPR PF01535 612 - 642 4.8e-08 PPR repeat
PPR_2 PF13041 617 - 656 3.2e-13 PPR repeat family
PPR_3 PF13812 632 - 689 9.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 640 - 673 5.2e-09 PPR repeat
PPR_2 PF13041 647 - 691 2.3e-11 PPR repeat family
PPR PF01535 647 - 677 7e-06 PPR repeat
PPR_1 PF12854 738 - 770 4.3e-08 PPR repeat
PPR_2 PF13041 741 - 779 1.1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015670)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41080 FvH4_6g41080 FvH4_6g41080
malus_domestica MD09G1122300.v1.1
prunus_persica Prupe.3G201200_v2.0.a1
pyrus_communis pycom09g04670
rosa_chinensis RchiOBHm_Chr2g0156641
rosa_laevigata RLG00000020927
rosa_multiflora Rmu_sc0018228.1_g000003
rosa_roxburghii Rroxscaffold_2G00092880
rosa_rugosa Rorug02G0454900
rosa_samantha Rh2AG520600 Rh2BG533700 Rh2CG505600 Rh2DG542500
rosa_wichuraiana Rw2G042950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1317, 1643, 2448
AasI GACNNNNNNGTC 1 cut(s) 1085
Acc36I ACCTGC 1 cut(s) 755
Acc65I GGTACC 1 cut(s) 1187
AccB1I GGYRCC 2 cut(s) 1187, 1752
AccB7I CCANNNNNTGG 2 cut(s) 1489, 1804
AccBSI CCGCTC 4 cut(s) 27, 92, 343, 1591
AccI GTMKAC 1 cut(s) 1835
AciI CCGC 9 cut(s) 25, 90, 343, 359, 1017, 1451, 1553, 1591, 2285
AclI AACGTT 2 cut(s) 990, 1248
AclWI GGATC 3 cut(s) 369, 1920, 2295
AcoI YGGCCR 1 cut(s) 2667
AcsI RAATTY 5 cut(s) 56, 727, 2371, 2397, 2587
AcuI CTGAAG 2 cut(s) 1482, 2597
AcvI CACGTG 1 cut(s) 211
AdeI CACNNNGTG 1 cut(s) 920
AfaI GTAC 6 cut(s) 1189, 1693, 1774, 2433, 2647, 2739
AfiI CCNNNNNNNGG 8 cut(s) 118, 157, 781, 1096, 1345, 1489, 1804, 2473
AflIII ACRYGT 2 cut(s) 210, 1737
AjiI CACGTC 1 cut(s) 1740
AjnI CCWGG 1 cut(s) 71
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
Alw21I GWGCWC 4 cut(s) 170, 177, 198, 411
Alw26I GTCTC 5 cut(s) 1029, 1127, 1746, 2352, 2687
AlwI GGATC 3 cut(s) 369, 1920, 2295
AlwNI CAGNNNCTG 3 cut(s) 132, 2092, 2296
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 924, 2110, 2667
ApeKI GCWGC 6 cut(s) 306, 1571, 2028, 2145, 2296, 2299
ApoI RAATTY 5 cut(s) 56, 727, 2371, 2397, 2587
Asp700I GAANNNNTTC 1 cut(s) 2050
Asp718I GGTACC 1 cut(s) 1187
AspLEI GCGC 2 cut(s) 355, 2392
AspS9I GGNCC 4 cut(s) 188, 1087, 1292, 2110
AsuC2I CCSGG 3 cut(s) 113, 671, 1617
AsuHPI GGTGA 5 cut(s) 646, 736, 769, 2488, 2713
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 3 cut(s) 188, 1087, 1292
AxyI CCTNAGG 1 cut(s) 2006
BalI TGGCCA 1 cut(s) 2669
BanI GGYRCC 2 cut(s) 1187, 1752
BanII GRGCYC 4 cut(s) 170, 177, 198, 411
BbrPI CACGTG 1 cut(s) 211
Bbv12I GWGCWC 4 cut(s) 170, 177, 198, 411
BbvI GCAGC 6 cut(s) 293, 1558, 2015, 2157, 2283, 2311
BciT130I CCWGG 1 cut(s) 73
BclI TGATCA 4 cut(s) 381, 591, 748, 1011
BcnI CCSGG 3 cut(s) 113, 671, 1617
BcoDI GTCTC 5 cut(s) 1029, 1127, 1746, 2352, 2687
BfaI CTAG 3 cut(s) 1985, 2196, 2519
BfmI CTRYAG 2 cut(s) 2297, 2470
BfuAI ACCTGC 1 cut(s) 755
BisI GCNGC 7 cut(s) 307, 344, 1572, 2029, 2146, 2297, 2300
BlpI GCTNAGC 1 cut(s) 176
BlsI GCNGC 7 cut(s) 308, 345, 1573, 2030, 2147, 2298, 2301
BmcAI AGTACT 1 cut(s) 1774
Bme1390I CCNGG 4 cut(s) 73, 113, 671, 1617
Bme18I GGWCC 3 cut(s) 188, 1087, 1292
BmeT110I CYCGRG 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 1740
BmgT120I GGNCC 4 cut(s) 188, 1087, 1292, 2110
BmrFI CCNGG 4 cut(s) 73, 113, 671, 1617
BmsI GCATC 5 cut(s) 534, 1478, 1558, 1876, 2505
Bpu1102I GCTNAGC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 2135
BpuMI CCSGG 3 cut(s) 113, 671, 1617
BsaAI YACGTR 2 cut(s) 211, 789
BsaXI ACNNNNNCTCC 4 cut(s) 961, 991, 1384, 1414
Bsc4I CCNNNNNNNGG 8 cut(s) 118, 157, 781, 1096, 1345, 1489, 1804, 2473
Bse1I ACTGG 5 cut(s) 272, 846, 939, 1719, 2086
Bse21I CCTNAGG 1 cut(s) 2006
Bse3DI GCAATG 3 cut(s) 823, 1266, 1663
BseBI CCWGG 1 cut(s) 73
BseLI CCNNNNNNNGG 8 cut(s) 118, 157, 781, 1096, 1345, 1489, 1804, 2473
BseMI GCAATG 3 cut(s) 823, 1266, 1663
BseMII CTCAG 6 cut(s) 190, 211, 554, 1040, 1169, 1881
BseNI ACTGG 5 cut(s) 272, 846, 939, 1719, 2086
BseRI GAGGAG 2 cut(s) 982, 1613
BseXI GCAGC 6 cut(s) 293, 1558, 2015, 2157, 2283, 2311
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 2281
BshFI GGCC 3 cut(s) 926, 2112, 2669
BshNI GGYRCC 2 cut(s) 1187, 1752
BsiHKAI GWGCWC 4 cut(s) 170, 177, 198, 411
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 4 cut(s) 113, 646, 671, 1616
BslFI GGGAC 7 cut(s) 201, 214, 887, 1073, 1305, 1494, 2104
BslI CCNNNNNNNGG 8 cut(s) 118, 157, 781, 1096, 1345, 1489, 1804, 2473
BsmAI GTCTC 5 cut(s) 1029, 1127, 1746, 2352, 2687
BsmBI CGTCTC 1 cut(s) 1746
BsmFI GGGAC 7 cut(s) 201, 214, 887, 1073, 1305, 1494, 2104
BsmI GAATGC 2 cut(s) 1503, 1784
BsnI GGCC 3 cut(s) 926, 2112, 2669
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 4 cut(s) 170, 177, 198, 411
Bsp1407I TGTACA 2 cut(s) 1691, 2737
Bsp143I GATC 9 cut(s) 219, 361, 381, 591, 748, 1011, 1912, 1987, 2287
Bsp1720I GCTNAGC 1 cut(s) 176
BspACI CCGC 9 cut(s) 25, 90, 343, 359, 1017, 1451, 1553, 1591, 2285
BspANI GGCC 3 cut(s) 926, 2112, 2669
BspCNI CTCAG 6 cut(s) 189, 210, 553, 1039, 1168, 1882
BspMAI CTGCAG 2 cut(s) 2301, 2474
BspMI ACCTGC 1 cut(s) 755
BspPI GGATC 3 cut(s) 369, 1920, 2295
BspQI GCTCTTC 1 cut(s) 399
BspT107I GGYRCC 2 cut(s) 1187, 1752
BsrBI CCGCTC 4 cut(s) 27, 92, 343, 1591
BsrDI GCAATG 3 cut(s) 823, 1266, 1663
BsrGI TGTACA 2 cut(s) 1691, 2737
BsrI ACTGG 5 cut(s) 272, 846, 939, 1719, 2086
BssMI GATC 9 cut(s) 219, 361, 381, 591, 748, 1011, 1912, 1987, 2287
BssNAI GTATAC 1 cut(s) 1836
Bst1107I GTATAC 1 cut(s) 1836
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 8 cut(s) 236, 886, 901, 1082, 1099, 2227, 2557, 2698
Bst6I CTCTTC 2 cut(s) 399, 1458
BstAPI GCANNNNNTGC 1 cut(s) 978
BstAUI TGTACA 2 cut(s) 1691, 2737
BstBAI YACGTR 2 cut(s) 211, 789
BstC8I GCNNGC 5 cut(s) 182, 357, 1823, 1982, 2033
BstDEI CTNAG 9 cut(s) 176, 197, 276, 540, 1026, 1155, 1890, 2006, 2191
BstEII GGTNACC 1 cut(s) 1099
BstHHI GCGC 2 cut(s) 355, 2392
BstKTI GATC 9 cut(s) 222, 364, 384, 594, 751, 1014, 1915, 1990, 2290
BstMAI GTCTC 5 cut(s) 1029, 1127, 1746, 2352, 2687
BstMBI GATC 9 cut(s) 219, 361, 381, 591, 748, 1011, 1912, 1987, 2287
BstMWI GCNNNNNNNGC 7 cut(s) 181, 328, 352, 978, 1538, 1577, 2008
BstNI CCWGG 1 cut(s) 73
BstPI GGTNACC 1 cut(s) 1099
BstSCI CCNGG 4 cut(s) 71, 111, 669, 1615
BstSFI CTRYAG 2 cut(s) 2297, 2470
BstSNI TACGTA 1 cut(s) 789
BstV1I GCAGC 6 cut(s) 293, 1558, 2015, 2157, 2283, 2311
BstXI CCANNNNNNTGG 2 cut(s) 934, 1413
BstZ17I GTATAC 1 cut(s) 1836
Bsu36I CCTNAGG 1 cut(s) 2006
BsuRI GGCC 3 cut(s) 926, 2112, 2669
BtrI CACGTC 1 cut(s) 1740
BtsI GCAGTG 2 cut(s) 1371, 1527
BtsIMutI CAGTG 5 cut(s) 240, 839, 897, 1371, 1527
BveI ACCTGC 1 cut(s) 755
Cac8I GCNNGC 5 cut(s) 182, 357, 1823, 1982, 2033
CaiI CAGNNNCTG 3 cut(s) 132, 2092, 2296
CfoI GCGC 2 cut(s) 355, 2392
Cfr13I GGNCC 4 cut(s) 188, 1087, 1292, 2110
CseI GACGC 1 cut(s) 1273
Csp6I GTAC 6 cut(s) 1188, 1692, 1773, 2432, 2646, 2738
CspCI CAANNNNNGTGG 2 cut(s) 1939, 1974
CviAII CATG 8 cut(s) 1150, 1184, 1484, 1799, 1991, 2126, 2602, 2615
CviQI GTAC 6 cut(s) 1188, 1692, 1773, 2432, 2646, 2738
DdeI CTNAG 9 cut(s) 176, 197, 276, 540, 1026, 1155, 1890, 2006, 2191
DpnI GATC 9 cut(s) 221, 363, 383, 593, 750, 1013, 1914, 1989, 2289
DpnII GATC 9 cut(s) 219, 361, 381, 591, 748, 1011, 1912, 1987, 2287
DraIII CACNNNGTG 1 cut(s) 920
DrdI GACNNNNNNGTC 1 cut(s) 1085
DseDI GACNNNNNNGTC 1 cut(s) 1085
EaeI YGGCCR 1 cut(s) 2667
Eam1104I CTCTTC 2 cut(s) 399, 1458
EarI CTCTTC 2 cut(s) 399, 1458
EciI GGCGGA 1 cut(s) 2300
Ecl136II GAGCTC 4 cut(s) 168, 175, 196, 409
Eco105I TACGTA 1 cut(s) 789
Eco24I GRGCYC 4 cut(s) 170, 177, 198, 411
Eco47I GGWCC 3 cut(s) 188, 1087, 1292
Eco53kI GAGCTC 4 cut(s) 168, 175, 196, 409
Eco57I CTGAAG 2 cut(s) 1482, 2597
Eco72I CACGTG 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 2006
Eco88I CYCGRG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 1099
EcoICRI GAGCTC 4 cut(s) 168, 175, 196, 409
EcoO109I RGGNCCY 2 cut(s) 188, 1292
EcoO65I GGTNACC 1 cut(s) 1099
EcoRI GAATTC 1 cut(s) 2587
EcoRII CCWGG 1 cut(s) 71
EcoT22I ATGCAT 2 cut(s) 1336, 2603
EcoT38I GRGCYC 4 cut(s) 170, 177, 198, 411
Esp3I CGTCTC 1 cut(s) 1746
FaeI CATG 8 cut(s) 1153, 1187, 1487, 1802, 1994, 2129, 2605, 2618
FaqI GGGAC 7 cut(s) 201, 214, 887, 1073, 1305, 1494, 2104
FatI CATG 8 cut(s) 1149, 1183, 1483, 1798, 1990, 2125, 2601, 2614
FauI CCCGC 3 cut(s) 97, 1010, 1444
FauNDI CATATG 1 cut(s) 2304
FbaI TGATCA 4 cut(s) 381, 591, 748, 1011
FblI GTMKAC 1 cut(s) 1835
Fnu4HI GCNGC 7 cut(s) 307, 344, 1572, 2029, 2146, 2297, 2300
FriOI GRGCYC 4 cut(s) 170, 177, 198, 411
Fsp4HI GCNGC 7 cut(s) 307, 344, 1572, 2029, 2146, 2297, 2300
FspBI CTAG 3 cut(s) 1985, 2196, 2519
GlaI GCGC 2 cut(s) 354, 2391
GluI GCNGC 7 cut(s) 307, 344, 1572, 2029, 2146, 2297, 2300
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 3 cut(s) 926, 2112, 2669
HapII CCGG 4 cut(s) 113, 646, 671, 1616
HgaI GACGC 1 cut(s) 1273
HhaI GCGC 2 cut(s) 355, 2392
Hin1II CATG 8 cut(s) 1153, 1187, 1487, 1802, 1994, 2129, 2605, 2618
Hin6I GCGC 2 cut(s) 353, 2390
HinP1I GCGC 2 cut(s) 353, 2390
HincII GTYRAC 2 cut(s) 576, 2719
HindII GTYRAC 2 cut(s) 576, 2719
HpaI GTTAAC 1 cut(s) 2719
HpaII CCGG 4 cut(s) 113, 646, 671, 1616
HphI GGTGA 5 cut(s) 646, 736, 769, 2488, 2713
Hpy166II GTNNAC 8 cut(s) 462, 576, 1403, 1836, 1847, 2219, 2434, 2719
Hpy188III TCNNGA 4 cut(s) 508, 623, 1868, 1931
Hpy8I GTNNAC 8 cut(s) 462, 576, 1403, 1836, 1847, 2219, 2434, 2719
HpyAV CCTTC 9 cut(s) 391, 754, 1069, 1114, 1555, 2505, 2572, 2576, 2725
HpyCH4III ACNGT 8 cut(s) 236, 886, 901, 1082, 1099, 2227, 2557, 2698
HpyCH4IV ACGT 8 cut(s) 210, 741, 788, 990, 1248, 1739, 1779, 2654
HpyF10VI GCNNNNNNNGC 7 cut(s) 181, 328, 352, 978, 1538, 1577, 2008
HpyF3I CTNAG 9 cut(s) 176, 197, 276, 540, 1026, 1155, 1890, 2006, 2191
HpySE526I ACGT 8 cut(s) 210, 741, 788, 990, 1248, 1739, 1779, 2654
Hsp92II CATG 8 cut(s) 1153, 1187, 1487, 1802, 1994, 2129, 2605, 2618
HspAI GCGC 2 cut(s) 353, 2390
KflI GGGWCCC 2 cut(s) 188, 1292
KpnI GGTACC 1 cut(s) 1191
Ksp22I TGATCA 4 cut(s) 381, 591, 748, 1011
KspAI GTTAAC 1 cut(s) 2719
Kzo9I GATC 9 cut(s) 219, 361, 381, 591, 748, 1011, 1912, 1987, 2287
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 7 cut(s) 165, 172, 340, 969, 1705, 1723, 2007
Lsp1109I GCAGC 6 cut(s) 293, 1558, 2015, 2157, 2283, 2311
LweI GCATC 5 cut(s) 534, 1478, 1558, 1876, 2505
MaeI CTAG 3 cut(s) 1985, 2196, 2519
MaeII ACGT 8 cut(s) 210, 741, 788, 990, 1248, 1739, 1779, 2654
MalI GATC 9 cut(s) 221, 363, 383, 593, 750, 1013, 1914, 1989, 2289
MbiI CCGCTC 4 cut(s) 27, 92, 343, 1591
MboI GATC 9 cut(s) 219, 361, 381, 591, 748, 1011, 1912, 1987, 2287
MboII GAAGA 9 cut(s) 229, 253, 416, 1152, 1171, 1475, 2141, 2501, 2603
MfeI CAATTG 2 cut(s) 494, 945
MhlI GDGCHC 4 cut(s) 170, 177, 198, 411
MlsI TGGCCA 1 cut(s) 2669
MluNI TGGCCA 1 cut(s) 2669
MlyI GAGTC 5 cut(s) 236, 239, 1050, 2126, 2488
MmeI TCCRAC 2 cut(s) 66, 1033
Mox20I TGGCCA 1 cut(s) 2669
Mph1103I ATGCAT 2 cut(s) 1336, 2603
MroXI GAANNNNTTC 1 cut(s) 2050
MscI TGGCCA 1 cut(s) 2669
MslI CAYNNNNRTG 2 cut(s) 2235, 2246
Msp20I TGGCCA 1 cut(s) 2669
MspA1I CMGCKG 2 cut(s) 180, 1017
MspI CCGG 4 cut(s) 113, 646, 671, 1616
MspR9I CCNGG 4 cut(s) 73, 113, 671, 1617
MunI CAATTG 2 cut(s) 494, 945
Mva1269I GAATGC 2 cut(s) 1503, 1784
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 7 cut(s) 181, 328, 352, 978, 1538, 1577, 2008
NciI CCSGG 3 cut(s) 113, 671, 1617
NdeI CATATG 1 cut(s) 2304
NdeII GATC 9 cut(s) 219, 361, 381, 591, 748, 1011, 1912, 1987, 2287
NlaIII CATG 8 cut(s) 1153, 1187, 1487, 1802, 1994, 2129, 2605, 2618
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 3 cut(s) 770, 1519, 2701
NsiI ATGCAT 2 cut(s) 1336, 2603
PciSI GCTCTTC 1 cut(s) 399
PctI GAATGC 2 cut(s) 1503, 1784
PdmI GAANNNNTTC 1 cut(s) 2050
PfeI GAWTC 6 cut(s) 129, 258, 697, 1218, 2384, 2624
PflFI GACNNNGTC 1 cut(s) 119
PflMI CCANNNNNTGG 2 cut(s) 1489, 1804
PfoI TCCNGGA 2 cut(s) 111, 669
PkrI GCNGC 7 cut(s) 308, 345, 1573, 2030, 2147, 2298, 2301
PleI GAGTC 5 cut(s) 235, 239, 1050, 2125, 2487
PmaCI CACGTG 1 cut(s) 211
PmlI CACGTG 1 cut(s) 211
PpsI GAGTC 5 cut(s) 235, 239, 1050, 2125, 2487
Ppu21I YACGTR 2 cut(s) 211, 789
PpuMI RGGWCCY 2 cut(s) 188, 1292
PsiI TTATAA 3 cut(s) 1317, 1643, 2448
Psp124BI GAGCTC 4 cut(s) 170, 177, 198, 411
Psp1406I AACGTT 2 cut(s) 990, 1248
Psp5II RGGWCCY 2 cut(s) 188, 1292
Psp6I CCWGG 1 cut(s) 71
PspCI CACGTG 1 cut(s) 211
PspEI GGTNACC 1 cut(s) 1099
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 71
PspPI GGNCC 4 cut(s) 188, 1087, 1292, 2110
PspPPI RGGWCCY 2 cut(s) 188, 1292
PstI CTGCAG 2 cut(s) 2301, 2474
PstNI CAGNNNCTG 3 cut(s) 132, 2092, 2296
PsyI GACNNNGTC 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 180
RsaI GTAC 6 cut(s) 1189, 1693, 1774, 2433, 2647, 2739
RsaNI GTAC 6 cut(s) 1188, 1692, 1773, 2432, 2646, 2738
RseI CAYNNNNRTG 2 cut(s) 2235, 2246
SacI GAGCTC 4 cut(s) 170, 177, 198, 411
SapI GCTCTTC 1 cut(s) 399
SatI GCNGC 7 cut(s) 307, 344, 1572, 2029, 2146, 2297, 2300
Sau3AI GATC 9 cut(s) 219, 361, 381, 591, 748, 1011, 1912, 1987, 2287
Sau96I GGNCC 4 cut(s) 188, 1087, 1292, 2110
ScaI AGTACT 1 cut(s) 1774
SchI GAGTC 5 cut(s) 236, 239, 1050, 2126, 2488
ScrFI CCNGG 4 cut(s) 73, 113, 671, 1617
SduI GDGCHC 4 cut(s) 170, 177, 198, 411
SfaNI GCATC 5 cut(s) 534, 1478, 1558, 1876, 2505
SfcI CTRYAG 2 cut(s) 2297, 2470
SinI GGWCC 3 cut(s) 188, 1087, 1292
SmiMI CAYNNNNRTG 2 cut(s) 2235, 2246
SmlI CTYRAG 1 cut(s) 2114
SmoI CTYRAG 1 cut(s) 2114
SnaBI TACGTA 1 cut(s) 789
SsiI CCGC 9 cut(s) 25, 90, 343, 359, 1017, 1451, 1553, 1591, 2285
SspMI CTAG 3 cut(s) 1985, 2196, 2519
SstI GAGCTC 4 cut(s) 170, 177, 198, 411
StyD4I CCNGG 4 cut(s) 71, 111, 669, 1615
TaaI ACNGT 8 cut(s) 236, 886, 901, 1082, 1099, 2227, 2557, 2698
TaiI ACGT 8 cut(s) 213, 744, 791, 993, 1251, 1742, 1782, 2657
TaqI TCGA 7 cut(s) 215, 225, 507, 526, 660, 931, 2482
TatI WGTACW 3 cut(s) 1691, 1772, 2737
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 6 cut(s) 129, 258, 697, 1218, 2384, 2624
TscAI CASTG 5 cut(s) 247, 846, 904, 1371, 1534
TseFI GTSAC 3 cut(s) 770, 1519, 2701
TseI GCWGC 6 cut(s) 306, 1571, 2028, 2145, 2296, 2299
Tsp45I GTSAC 3 cut(s) 770, 1519, 2701
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 5 cut(s) 247, 846, 904, 1371, 1534
Tth111I GACNNNGTC 1 cut(s) 119
Van91I CCANNNNNTGG 2 cut(s) 1489, 1804
VpaK11BI GGWCC 3 cut(s) 188, 1087, 1292
XapI RAATTY 5 cut(s) 56, 727, 2371, 2397, 2587
XcmI CCANNNNNNNNNTGG 2 cut(s) 934, 1211
XmiI GTMKAC 1 cut(s) 1835
XmnI GAANNNNTTC 1 cut(s) 2050
XspI CTAG 3 cut(s) 1985, 2196, 2519
ZrmI AGTACT 1 cut(s) 1774
Zsp2I ATGCAT 2 cut(s) 1336, 2603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.