FvH4_6g41360
ERF Family

Pectate lyase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015088
Physical Location & Seq
Forward (+)
32529128 .. 32530594
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41360.t1

Sequence Viewer

Length: 870 bp
ATGCTGCAGATTTTGATGTCAGGAAATATGGAGCCAAGGCAGATGGCAAGACAGATGATAGCCAGAAACGATTTTGCCAAAACTGGAAAGTGCAATTCACTTCCTATCAATATACGAATTACTGGGGTTACCAATTCACACATTCAAGACAAAACATCGTTGAACAGCAAGCTGTTTCACATAAACGTCATCAACTCCAAACACCTGACCCTTCAACGTATCACCATCGATGCACCTCAAGAAAGCCTAAACACAGATGGAATCCACATTGGTCGCTCATCATATATCAATGTTACCGATGCAAACATCAAGACTGGGGATGATTGTGTCTCTCTAGGTGATGGAAGCCAGAACATAAATGTCGAGAAGGTGACTTGCGGCTCTGGCCATGGCATCAGTATTGGTAGCCTGGGAAGATATCACGACGAGCAACCTGTTCAGGGAGTCACTGTCAGATACTGCCAGATTTCGAATACCACAAATGGGGTTAGGATTAAAACTTGGCCAGCTTCTCCTAATGGTGTGGCCTCAGATTTGCATTTCGAGGACATTTCTATGGACAACGTCAAAACCAACCCTGTACTTGTAGACCAAGAATATTGCCCATATGGTCAATGCCAAGCAAAGTTACCGTCTAAAGTCAAGATCAGCAATGTGAGCTTCAAGAACATTAGGGGCACAACTCAAGACCTTGTGGCTGTGAAGCTCGTTTGCAGCAGAGGGATACCGTGCCAGAATGTGCAAGTTGCTGACATCAACTTAACATATAATGGGAACAAAAATGGAACTGCCATATCTGAATGTGCCAACGTGAAGCCTACCGTGTCAGGATTTAATCATCCACAAGTTTGTGCAAAGAACGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

290

Amino Acids

31.38

Weight (kDa)

8.77

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 27 - 274 6.5e-80 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07850 AT3G14040
fragaria_vesca FvH4_6g41360
malus_domestica MD17G1110900.v1.1
prunus_persica Prupe.3G203200_v2.0.a1
pyrus_communis pycom17g10330
rosa_chinensis RchiOBHm_Chr2g0156901
rosa_laevigata RLG00000020951
rosa_multiflora Rmu_ssc0000408.1_g000002
rosa_roxburghii Rroxscaffold_2G00092600
rosa_rugosa Rorug02G0456900 Rorug02G0457000
rosa_samantha Rh2AG522700 Rh2BG536000 Rh2CG507600 Rh2DG545000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 588
AciI CCGC 1 cut(s) 378
AclI AACGTT 1 cut(s) 861
AcoI YGGCCR 2 cut(s) 385, 503
AfaI GTAC 1 cut(s) 582
AfiI CCNNNNNNNGG 2 cut(s) 440, 483
AgsI TTSAA 4 cut(s) 146, 163, 215, 664
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 4 cut(s) 172, 509, 660, 706
AluI AGCT 4 cut(s) 172, 509, 660, 706
Alw26I GTCTC 1 cut(s) 334
AlwNI CAGNNNCTG 1 cut(s) 459
AoxI GGCC 3 cut(s) 385, 503, 525
ApeKI GCWGC 2 cut(s) 4, 714
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AsuHPI GGTGA 3 cut(s) 214, 350, 382
AsuII TTCGAA 1 cut(s) 470
BaeGI GKGCMC 1 cut(s) 680
BalI TGGCCA 2 cut(s) 387, 505
BbvI GCAGC 1 cut(s) 726
BccI CCATC 4 cut(s) 37, 233, 251, 335
BciT130I CCWGG 1 cut(s) 410
BciVI GTATCC 1 cut(s) 717
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 5
BfuI GTATCC 1 cut(s) 717
BisI GCNGC 3 cut(s) 5, 379, 715
BlsI GCNGC 3 cut(s) 6, 380, 716
Bme1390I CCNGG 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 410
BmrI ACTGGG 2 cut(s) 132, 324
BmsI GCATC 3 cut(s) 220, 289, 402
BmuI ACTGGG 2 cut(s) 132, 324
Bpu14I TTCGAA 1 cut(s) 470
BpuEI CTTGAG 2 cut(s) 222, 669
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 35, 388, 409
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 483
Bse1I ACTGG 3 cut(s) 88, 127, 319
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 1 cut(s) 410
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 35, 388, 409
BseGI GGATG 2 cut(s) 325, 838
BseLI CCNNNNNNNGG 2 cut(s) 440, 483
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 3 cut(s) 88, 127, 319
BseSI GKGCMC 1 cut(s) 680
BseXI GCAGC 1 cut(s) 726
BshFI GGCC 3 cut(s) 387, 505, 527
BshVI ATCGAT 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 440, 483
BsmAI GTCTC 1 cut(s) 334
BsnI GGCC 3 cut(s) 387, 505, 527
Bsp119I TTCGAA 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 680
Bsp143I GATC 1 cut(s) 645
Bsp19I CCATGG 1 cut(s) 388
BspACI CCGC 1 cut(s) 378
BspANI GGCC 3 cut(s) 387, 505, 527
BspCNI CTCAG 1 cut(s) 542
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 9
BspT104I TTCGAA 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 658
BsrI ACTGG 3 cut(s) 88, 127, 319
BssECI CCNNGG 3 cut(s) 35, 388, 409
BssMI GATC 1 cut(s) 645
BssT1I CCWWGG 2 cut(s) 35, 388
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 4 cut(s) 451, 633, 729, 823
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 170, 507
BstDEI CTNAG 1 cut(s) 529
BstDSI CCRYGG 1 cut(s) 388
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 325, 838
BstKTI GATC 1 cut(s) 648
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 1 cut(s) 645
BstMWI GCNNNNNNNGC 2 cut(s) 384, 657
BstNI CCWGG 1 cut(s) 410
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 5
BstSLI GKGCMC 1 cut(s) 680
BstV1I GCAGC 1 cut(s) 726
Bsu15I ATCGAT 1 cut(s) 228
BsuI GTATCC 1 cut(s) 717
BsuRI GGCC 3 cut(s) 387, 505, 527
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 325, 838
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 2 cut(s) 170, 507
CaiI CAGNNNCTG 1 cut(s) 459
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 1 cut(s) 581
CviAII CATG 1 cut(s) 389
CviQI GTAC 1 cut(s) 581
DdeI CTNAG 1 cut(s) 529
DpnI GATC 1 cut(s) 647
DpnII GATC 1 cut(s) 645
EaeI YGGCCR 2 cut(s) 385, 503
Eco130I CCWWGG 2 cut(s) 35, 388
Eco32I GATATC 1 cut(s) 419
Eco91I GGTNACC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 408
EcoRV GATATC 1 cut(s) 419
EcoT14I CCWWGG 2 cut(s) 35, 388
ErhI CCWWGG 2 cut(s) 35, 388
FaeI CATG 1 cut(s) 392
FatI CATG 1 cut(s) 388
FauNDI CATATG 1 cut(s) 607
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 3 cut(s) 5, 379, 715
FokI GGATG 2 cut(s) 332, 825
Fsp4HI GCNGC 3 cut(s) 5, 379, 715
FspBI CTAG 1 cut(s) 335
GluI GCNGC 3 cut(s) 5, 379, 715
HaeIII GGCC 3 cut(s) 387, 505, 527
Hin1II CATG 1 cut(s) 392
HinfI GANTC 2 cut(s) 261, 444
HphI GGTGA 3 cut(s) 214, 350, 382
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 3 cut(s) 455, 532, 799
Hpy8I GTNNAC 1 cut(s) 589
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 221, 361
HpyCH4III ACNGT 4 cut(s) 451, 633, 729, 823
HpyCH4IV ACGT 5 cut(s) 186, 217, 564, 810, 861
HpyCH4V TGCA 8 cut(s) 7, 93, 233, 302, 538, 714, 742, 854
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 657
HpyF3I CTNAG 1 cut(s) 529
HpySE526I ACGT 5 cut(s) 186, 217, 564, 810, 861
Hsp92II CATG 1 cut(s) 392
Kzo9I GATC 1 cut(s) 645
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 726
LweI GCATC 3 cut(s) 220, 289, 402
MaeI CTAG 1 cut(s) 335
MaeII ACGT 5 cut(s) 186, 217, 564, 810, 861
MaeIII GTNAC 5 cut(s) 127, 292, 370, 445, 627
MalI GATC 1 cut(s) 647
MboI GATC 1 cut(s) 645
MboII GAAGA 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 680
MlsI TGGCCA 2 cut(s) 387, 505
MluCI AATT 3 cut(s) 94, 117, 133
MluNI TGGCCA 2 cut(s) 387, 505
MlyI GAGTC 1 cut(s) 453
MnlI CCTC 4 cut(s) 246, 538, 538, 713
Mox20I TGGCCA 2 cut(s) 387, 505
MscI TGGCCA 2 cut(s) 387, 505
MseI TTAA 4 cut(s) 495, 761, 834, 868
MslI CAYNNNNRTG 1 cut(s) 554
Msp20I TGGCCA 2 cut(s) 387, 505
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 384, 657
NcoI CCATGG 1 cut(s) 388
NdeI CATATG 1 cut(s) 607
NdeII GATC 1 cut(s) 645
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 370, 445
NspV TTCGAA 1 cut(s) 470
PfeI GAWTC 1 cut(s) 261
PflFI GACNNNGTC 1 cut(s) 563
PkrI GCNGC 3 cut(s) 6, 380, 716
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
Psp1406I AACGTT 1 cut(s) 861
Psp6I CCWGG 1 cut(s) 408
PspEI GGTNACC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 459
PsyI GACNNNGTC 1 cut(s) 563
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
RseI CAYNNNNRTG 1 cut(s) 554
SaqAI TTAA 4 cut(s) 495, 761, 834, 868
SatI GCNGC 3 cut(s) 5, 379, 715
Sau3AI GATC 1 cut(s) 645
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 3 cut(s) 220, 289, 402
SfcI CTRYAG 1 cut(s) 5
SfuI TTCGAA 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 2 cut(s) 237, 684
SmoI CTYRAG 2 cut(s) 237, 684
Sse9I AATT 3 cut(s) 94, 117, 133
SsiI CCGC 1 cut(s) 378
SspI AATATT 1 cut(s) 599
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 2 cut(s) 35, 388
TaaI ACNGT 4 cut(s) 451, 633, 729, 823
TaiI ACGT 5 cut(s) 189, 220, 567, 813, 864
TaqI TCGA 4 cut(s) 228, 363, 470, 543
TasI AATT 3 cut(s) 94, 117, 133
TatI WGTACW 1 cut(s) 580
TauI GCSGC 1 cut(s) 381
TfiI GAWTC 1 cut(s) 261
Tru1I TTAA 4 cut(s) 495, 761, 834, 868
Tru9I TTAA 4 cut(s) 495, 761, 834, 868
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 2 cut(s) 370, 445
TseI GCWGC 2 cut(s) 4, 714
Tsp45I GTSAC 2 cut(s) 370, 445
TspRI CASTG 1 cut(s) 454
Tth111I GACNNNGTC 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 588
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.