RLG00000020951
ERF Family

Pectate lyase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015088
Physical Location & Seq
Forward (+)
70451952 .. 70453481
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020951

Sequence Viewer

Length: 1302 bp
ATGGGTTCAAAATCTTTCCTTGGAACTTGTTTTTTATTCTTGGTAGCGTTCTCCTTAAAAACCAATGCTGCAGATTTTGATATCAAGAAATATGGAGCCAAGGCAGATGGCAGGACAGATGACAGCCAGGCCATCAATAATGCATGGAGAGACGCATGTGCAGCCGCGACTCCAAGCACGGTTGTGATAGCGAAGGGTAAATATTTGGTTGGTCCGGTCAGGTTTGGAGGACCCTGCAAGGCAGCGGTTAGCATTAGGGTTGAAGGAACCCTACAGGCTCCGGCTGAACCTGAAAAGCTCAAATCCCAGGATGGGTGGGTCGTTTTCCAAAATGTCGATAAGTTATCTGTGTTCGGAGGGGGCACTTTTGACGGCCAAGGAAAACTAGCTTGGTCCAAAAATAATTGTGCCAAAACTGGAAAGTGCAATTCACTTCCTATCGTAAGTCTTATGTACCCATTTACAATCAATTTGAAGCTTAACTATTTGTTTCTAACAAGTAATATACTAACATACATACTGCCCGTTGCTTTGTGTATACAGAATATACGATTGACTGGGGTTACCAATTCACACATTCAACACATAACATCGTTGAACAGCAAGTTGTTTCACATGAACGTCATCAACTGCAAACACCTGACCCTCGAACACATCACCATCGATGCACCTCAAGAAAGTCTAAACACAGATGGAATCCATATTGGTCGGTCCTCAAATATCAATGTTACCAATGCAAACATCAAAACTGGGGATGATTGTGTCTCTATCGGTGACGGAAGCCAGCAAATAAATGTCGAGAAGGTGATATGCGGCCCTGGCCATGGCATTAGTATCGGTAGCCTAGGAAGATATCACAACGAGCAACCTGTTGAGGGAGTCACTGTGAGAAACTGCACCATTTCGAATACCTCAAATGGTGTTAGGATTAAAACCTGGCCAGCTTCTCCAAATGGTGTGGCCTCAAATTTGCATTTTGAGGACATTATTATGAACAACGTCAAAACCACCCCTGTGCTTATAGACCAAGGATATTGCCCATATGGTCAATGTCAAGCAAGGTTACCATCTAAAGTCAAGATAACCAATGTGAGCTTCAAGAACATTAGGGGCACATCTCAAGACCCTGTGGCTGTGAAGCTCGTTTGCAGCAAAGGGATACCGTGCCAGAATGTGCAAGTTGCTGACATCAACTTGACATATAATGGGAACAAAGGAACTGCTACATCCGAATGTGCCAACGTGAAGCCTACTGTGTCAGGAAAAGTTAATCCACAAGTTTGTGCAAAGAACGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

434

Amino Acids

46.4

Weight (kDa)

9.08

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 27 - 70 2.1e-09 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 53 - 151 9.2e-15 Glycosyl hydrolases family 28
Glyco_hydro_28 PF00295 183 - 418 3.7e-81 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07850 AT3G14040
fragaria_vesca FvH4_6g41360
malus_domestica MD17G1110900.v1.1
prunus_persica Prupe.3G203200_v2.0.a1
pyrus_communis pycom17g10330
rosa_chinensis RchiOBHm_Chr2g0156901
rosa_laevigata RLG00000020951
rosa_multiflora Rmu_ssc0000408.1_g000002
rosa_roxburghii Rroxscaffold_2G00092600
rosa_rugosa Rorug02G0456900 Rorug02G0457000
rosa_samantha Rh2AG522700 Rh2BG536000 Rh2CG507600 Rh2DG545000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 538
AccII CGCG 1 cut(s) 167
AciI CCGC 3 cut(s) 165, 245, 813
AclI AACGTT 1 cut(s) 1293
AcoI YGGCCR 3 cut(s) 373, 820, 938
AcsI RAATTY 1 cut(s) 967
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 3 cut(s) 312, 824, 875
AgsI TTSAA 6 cut(s) 9, 263, 475, 581, 598, 1099
AjnI CCWGG 4 cut(s) 126, 306, 817, 935
AjuI GAANNNNNNNTTGG 4 cut(s) 373, 405, 1079, 1111
AleI CACNNNNGTG 2 cut(s) 182, 1013
AluBI AGCT 6 cut(s) 298, 389, 478, 944, 1095, 1141
AluI AGCT 6 cut(s) 298, 389, 478, 944, 1095, 1141
Alw26I GTCTC 2 cut(s) 144, 769
AoxI GGCC 6 cut(s) 129, 373, 814, 820, 938, 960
ApeKI GCWGC 4 cut(s) 68, 161, 242, 1149
ApoI RAATTY 1 cut(s) 967
AspA2I CCTAGG 1 cut(s) 844
AspS9I GGNCC 5 cut(s) 212, 230, 393, 711, 815
AsuHPI GGTGA 3 cut(s) 649, 785, 817
AsuII TTCGAA 1 cut(s) 905
AvaII GGWCC 4 cut(s) 212, 230, 393, 711
AvrII CCTAGG 1 cut(s) 844
BaeGI GKGCMC 2 cut(s) 365, 1115
BalI TGGCCA 2 cut(s) 822, 940
BarI GAAGNNNNNNTAC 2 cut(s) 255, 287
BbvI GCAGC 4 cut(s) 55, 173, 254, 1161
BccI CCATC 6 cut(s) 101, 140, 305, 668, 686, 1075
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 817, 851
BciT130I CCWGG 4 cut(s) 128, 308, 819, 937
BciVI GTATCC 1 cut(s) 1152
BcoDI GTCTC 2 cut(s) 144, 769
BfaI CTAG 2 cut(s) 386, 845
BfmI CTRYAG 2 cut(s) 69, 272
BfuI GTATCC 1 cut(s) 1152
BisI GCNGC 6 cut(s) 69, 162, 165, 243, 814, 1150
BlnI CCTAGG 1 cut(s) 844
BlsI GCNGC 6 cut(s) 70, 163, 166, 244, 815, 1151
Bme1390I CCNGG 4 cut(s) 128, 308, 819, 937
Bme18I GGWCC 4 cut(s) 212, 230, 393, 711
BmgT120I GGNCC 5 cut(s) 212, 230, 393, 711, 815
BmiI GGNNCC 4 cut(s) 97, 232, 268, 279
BmrFI CCNGG 4 cut(s) 128, 308, 819, 937
BmrI ACTGGG 2 cut(s) 567, 759
BmsI GCATC 1 cut(s) 655
BmuI ACTGGG 2 cut(s) 567, 759
Bpu14I TTCGAA 1 cut(s) 905
BpuEI CTTGAG 2 cut(s) 657, 1104
Bsa29I ATCGAT 1 cut(s) 663
BsaJI CCNNGG 8 cut(s) 19, 99, 306, 376, 817, 823, 844, 1027
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 824, 875
Bse1I ACTGG 3 cut(s) 421, 562, 754
BseBI CCWGG 4 cut(s) 128, 308, 819, 937
BseCI ATCGAT 1 cut(s) 663
BseDI CCNNGG 8 cut(s) 19, 99, 306, 376, 817, 823, 844, 1027
BseGI GGATG 3 cut(s) 316, 760, 1226
BseLI CCNNNNNNNGG 3 cut(s) 312, 824, 875
BseNI ACTGG 3 cut(s) 421, 562, 754
BseSI GKGCMC 2 cut(s) 365, 1115
BseXI GCAGC 4 cut(s) 55, 173, 254, 1161
BsgI GTGCAG 2 cut(s) 180, 880
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 6 cut(s) 131, 375, 816, 822, 940, 962
BshVI ATCGAT 1 cut(s) 663
BsiSI CCGG 2 cut(s) 215, 281
BslI CCNNNNNNNGG 3 cut(s) 312, 824, 875
BsmAI GTCTC 2 cut(s) 144, 769
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 6 cut(s) 131, 375, 816, 822, 940, 962
Bsp119I TTCGAA 1 cut(s) 905
Bsp1286I GDGCHC 2 cut(s) 365, 1115
Bsp19I CCATGG 1 cut(s) 823
BspACI CCGC 3 cut(s) 165, 245, 813
BspANI GGCC 6 cut(s) 131, 375, 816, 822, 940, 962
BspDI ATCGAT 1 cut(s) 663
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 4 cut(s) 97, 232, 268, 279
BspMAI CTGCAG 1 cut(s) 73
BspT104I TTCGAA 1 cut(s) 905
BsrI ACTGG 3 cut(s) 421, 562, 754
BssECI CCNNGG 8 cut(s) 19, 99, 306, 376, 817, 823, 844, 1027
BssNAI GTATAC 1 cut(s) 539
BssT1I CCWWGG 6 cut(s) 19, 99, 376, 823, 844, 1027
Bst1107I GTATAC 1 cut(s) 539
Bst2UI CCWGG 4 cut(s) 128, 308, 819, 937
Bst4CI ACNGT 4 cut(s) 181, 886, 1164, 1255
BstBI TTCGAA 1 cut(s) 905
BstC8I GCNNGC 2 cut(s) 785, 942
BstDSI CCRYGG 1 cut(s) 823
BstEII GGTNACC 2 cut(s) 562, 1062
BstF5I GGATG 3 cut(s) 316, 760, 1226
BstFNI CGCG 1 cut(s) 167
BstMAI GTCTC 2 cut(s) 144, 769
BstMWI GCNNNNNNNGC 2 cut(s) 161, 819
BstNI CCWGG 4 cut(s) 128, 308, 819, 937
BstNSI RCATGY 1 cut(s) 159
BstPI GGTNACC 2 cut(s) 562, 1062
BstSCI CCNGG 4 cut(s) 126, 306, 817, 935
BstSFI CTRYAG 2 cut(s) 69, 272
BstSLI GKGCMC 2 cut(s) 365, 1115
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 4 cut(s) 55, 173, 254, 1161
BstZ17I GTATAC 1 cut(s) 539
Bsu15I ATCGAT 1 cut(s) 663
BsuI GTATCC 1 cut(s) 1152
BsuRI GGCC 6 cut(s) 131, 375, 816, 822, 940, 962
BsuTUI ATCGAT 1 cut(s) 663
BtgI CCRYGG 1 cut(s) 823
BtsCI GGATG 3 cut(s) 316, 760, 1226
BtsIMutI CAGTG 1 cut(s) 882
Cac8I GCNNGC 2 cut(s) 785, 942
Cfr13I GGNCC 5 cut(s) 212, 230, 393, 711, 815
ClaI ATCGAT 1 cut(s) 663
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 454
CspCI CAANNNNNGTGG 2 cut(s) 939, 974
CviAII CATG 4 cut(s) 144, 156, 616, 824
CviQI GTAC 1 cut(s) 454
EaeI YGGCCR 3 cut(s) 373, 820, 938
Eco130I CCWWGG 6 cut(s) 19, 99, 376, 823, 844, 1027
Eco32I GATATC 2 cut(s) 82, 854
Eco47I GGWCC 4 cut(s) 212, 230, 393, 711
Eco91I GGTNACC 2 cut(s) 562, 1062
EcoO109I RGGNCCY 1 cut(s) 230
EcoO65I GGTNACC 2 cut(s) 562, 1062
EcoRII CCWGG 4 cut(s) 126, 306, 817, 935
EcoRV GATATC 2 cut(s) 82, 854
EcoT14I CCWWGG 6 cut(s) 19, 99, 376, 823, 844, 1027
EcoT22I ATGCAT 1 cut(s) 145
ErhI CCWWGG 6 cut(s) 19, 99, 376, 823, 844, 1027
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 4 cut(s) 147, 159, 619, 827
FatI CATG 4 cut(s) 143, 155, 615, 823
FauNDI CATATG 1 cut(s) 1042
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 6 cut(s) 69, 162, 165, 243, 814, 1150
FokI GGATG 3 cut(s) 323, 767, 1213
Fsp4HI GCNGC 6 cut(s) 69, 162, 165, 243, 814, 1150
FspBI CTAG 2 cut(s) 386, 845
GluI GCNGC 6 cut(s) 69, 162, 165, 243, 814, 1150
HaeIII GGCC 6 cut(s) 131, 375, 816, 822, 940, 962
HapII CCGG 2 cut(s) 215, 281
HgaI GACGC 1 cut(s) 161
Hin1II CATG 4 cut(s) 147, 159, 619, 827
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 3 cut(s) 169, 696, 879
HpaII CCGG 2 cut(s) 215, 281
HphI GGTGA 3 cut(s) 649, 785, 817
Hpy166II GTNNAC 1 cut(s) 539
Hpy188I TCNGA 2 cut(s) 356, 1231
Hpy188III TCNNGA 7 cut(s) 85, 674, 799, 1078, 1099, 1121, 1260
Hpy8I GTNNAC 1 cut(s) 539
HpyAV CCTTC 3 cut(s) 187, 257, 796
HpyCH4III ACNGT 4 cut(s) 181, 886, 1164, 1255
HpyCH4IV ACGT 4 cut(s) 621, 999, 1242, 1293
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 819
HpySE526I ACGT 4 cut(s) 621, 999, 1242, 1293
Hsp92II CATG 4 cut(s) 147, 159, 619, 827
LmnI GCTCC 2 cut(s) 95, 283
Lsp1109I GCAGC 4 cut(s) 55, 173, 254, 1161
LweI GCATC 1 cut(s) 655
MaeI CTAG 2 cut(s) 386, 845
MaeII ACGT 4 cut(s) 621, 999, 1242, 1293
MaeIII GTNAC 5 cut(s) 562, 727, 773, 880, 1062
MboII GAAGA 1 cut(s) 861
MhlI GDGCHC 2 cut(s) 365, 1115
MlsI TGGCCA 2 cut(s) 822, 940
MluCI AATT 5 cut(s) 403, 427, 469, 568, 967
MluNI TGGCCA 2 cut(s) 822, 940
MlyI GAGTC 2 cut(s) 163, 888
MnlI CCTC 9 cut(s) 221, 350, 656, 681, 724, 868, 922, 973, 973
Mox20I TGGCCA 2 cut(s) 822, 940
Mph1103I ATGCAT 1 cut(s) 145
MscI TGGCCA 2 cut(s) 822, 940
MseI TTAA 5 cut(s) 56, 480, 930, 1269, 1300
MslI CAYNNNNRTG 4 cut(s) 182, 989, 1013, 1231
Msp20I TGGCCA 2 cut(s) 822, 940
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 215, 281
MspR9I CCNGG 4 cut(s) 128, 308, 819, 937
MvaI CCWGG 4 cut(s) 128, 308, 819, 937
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 161, 819
NcoI CCATGG 1 cut(s) 823
NdeI CATATG 1 cut(s) 1042
NlaIII CATG 4 cut(s) 147, 159, 619, 827
NlaIV GGNNCC 4 cut(s) 97, 232, 268, 279
NmuCI GTSAC 2 cut(s) 773, 880
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 1 cut(s) 159
NspV TTCGAA 1 cut(s) 905
OliI CACNNNNGTG 2 cut(s) 182, 1013
PfeI GAWTC 1 cut(s) 696
PkrI GCNGC 6 cut(s) 70, 163, 166, 244, 815, 1151
PleI GAGTC 2 cut(s) 163, 887
PpsI GAGTC 2 cut(s) 163, 887
PpuMI RGGWCCY 1 cut(s) 230
Psp1406I AACGTT 1 cut(s) 1293
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 4 cut(s) 126, 306, 817, 935
PspEI GGTNACC 2 cut(s) 562, 1062
PspGI CCWGG 4 cut(s) 126, 306, 817, 935
PspN4I GGNNCC 4 cut(s) 97, 232, 268, 279
PspPI GGNCC 5 cut(s) 212, 230, 393, 711, 815
PspPPI RGGWCCY 1 cut(s) 230
PstI CTGCAG 1 cut(s) 73
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 4 cut(s) 182, 989, 1013, 1231
SaqAI TTAA 5 cut(s) 56, 480, 930, 1269, 1300
SatI GCNGC 6 cut(s) 69, 162, 165, 243, 814, 1150
Sau96I GGNCC 5 cut(s) 212, 230, 393, 711, 815
SchI GAGTC 2 cut(s) 163, 888
ScrFI CCNGG 4 cut(s) 128, 308, 819, 937
SduI GDGCHC 2 cut(s) 365, 1115
SfaNI GCATC 1 cut(s) 655
SfcI CTRYAG 2 cut(s) 69, 272
SfuI TTCGAA 1 cut(s) 905
SinI GGWCC 4 cut(s) 212, 230, 393, 711
SmiMI CAYNNNNRTG 4 cut(s) 182, 989, 1013, 1231
SmlI CTYRAG 2 cut(s) 672, 1119
SmoI CTYRAG 2 cut(s) 672, 1119
Sse9I AATT 5 cut(s) 403, 427, 469, 568, 967
SsiI CCGC 3 cut(s) 165, 245, 813
SspI AATATT 1 cut(s) 203
SspMI CTAG 2 cut(s) 386, 845
StyD4I CCNGG 4 cut(s) 126, 306, 817, 935
StyI CCWWGG 6 cut(s) 19, 99, 376, 823, 844, 1027
TaaI ACNGT 4 cut(s) 181, 886, 1164, 1255
TaiI ACGT 4 cut(s) 624, 1002, 1245, 1296
TaqI TCGA 5 cut(s) 336, 648, 663, 798, 905
TaqII GACCGA 1 cut(s) 699
TasI AATT 5 cut(s) 403, 427, 469, 568, 967
TauI GCSGC 2 cut(s) 167, 816
TfiI GAWTC 1 cut(s) 696
Tru1I TTAA 5 cut(s) 56, 480, 930, 1269, 1300
Tru9I TTAA 5 cut(s) 56, 480, 930, 1269, 1300
TscAI CASTG 1 cut(s) 889
TseFI GTSAC 2 cut(s) 773, 880
TseI GCWGC 4 cut(s) 68, 161, 242, 1149
Tsp45I GTSAC 2 cut(s) 773, 880
TspDTI ATGAA 2 cut(s) 632, 1007
TspGWI ACGGA 1 cut(s) 792
TspRI CASTG 1 cut(s) 889
VpaK11BI GGWCC 4 cut(s) 212, 230, 393, 711
XapI RAATTY 1 cut(s) 967
XceI RCATGY 1 cut(s) 159
XmaJI CCTAGG 1 cut(s) 844
XmiI GTMKAC 1 cut(s) 538
XspI CTAG 2 cut(s) 386, 845
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.