Rh2CG507600
ERF Family

Pectate lyase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015088
Physical Location & Seq
Forward (+)
67931757 .. 67933275
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG507600.1

Sequence Viewer

Length: 1200 bp
ATGGGTTCAAAATCTTTCCTTGGCACTTGTTTTTTATTCTTGGTAGCGTTCTCCTTAAAAACCAATGCTGCAGATTTTGATATCAAGAAATATGGAGCCAAGGCAGATGGCAGGACAGATGACAGCCAGGCCATCAATAATGCATGGAGAGACGCATGTGCAGCCGCGACTCCAAGCACGGTTGTGATAGCGAAGGGTAAATATTTGGTTGGTCCGGTCAGGTTTGGAGGACCCTGCAAGGCAGCGGTTAGCATTAGGGTTGAAGGAACCCTACAGGCTCCGGCTGAACCTGAAAAGCTCAAATCCCAGGATGGGTGGGTAGTTTTCCAAAATGTCGATAAGTTATCCGTGTTCGGAGGGGGCACTTTTGACGGCCAAGGAAAACTAGCTTGGTCCAAAAATAATTGTGCCAAAACTGGAAAGTGCAATTCACTTCCTATCAATATACGATTGACTGGGGTTACCAATTCACACATTCAACACATAACATCGTTGAACAGCAAGTTGTTTCACATGAACGTCATCAACTGCAAACACCTGACCCTCGAACACATCACCATCGATGCACCTCAAGAAAGTCTAAACACAGATGGAATCCATATTGGTCGGTCCTCAAATATCAATGTTACCAATGCAAACATCAAAACTGGGGATGATTGTGTCTCTATCGGTGACGGAAGCCAGCAAATAAATGTCGAGAAGGTGATATGCGGCCCTGGCCATGGCATTAGTATCGGTAGCCTAGGAAGATATCACAACGAGCAACCTGTTGAGGGAGTCACTGTGAGAAACTGCACCATTTCGAATACCTCAAATGGTGTTAGGATTAAAACCTGGCCAGCTTCTCCAAATGGTGTGGCCTCAAATTTGCATTTCGAGGACATTATTATGAACAACGTCAAAACCACCCCTGTGCTTATAGACCAAGGATATTGCCCATATGGTCAATGTCAAGCAAGGTTACCGTCTAAAGTCAAGATAACCAATGTGAGCTTCAAGAACATTAGGGGCACATCTCAAGACCCTGTGGCTGTGAAGCTCGTTTGCAGCAAAGGGATACCGTGCCAGAATGTGCAAGTTGCTGACATCAACTTGACATATAATGGGAACAAAGGAACTGCTACATCCGAATGTGCCAACGTGAAGCCTACCGTGTCAGGAAAAGTTAATCCACAAGTTTGTGCAAAGAACGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

399

Amino Acids

42.48

Weight (kDa)

9.08

Isoelectric Point (pI)

26.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 27 - 70 1.7e-09 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 53 - 384 4.1e-104 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07850 AT3G14040
fragaria_vesca FvH4_6g41360
malus_domestica MD17G1110900.v1.1
prunus_persica Prupe.3G203200_v2.0.a1
pyrus_communis pycom17g10330
rosa_chinensis RchiOBHm_Chr2g0156901
rosa_laevigata RLG00000020951
rosa_multiflora Rmu_ssc0000408.1_g000002
rosa_roxburghii Rroxscaffold_2G00092600
rosa_rugosa Rorug02G0456900 Rorug02G0457000
rosa_samantha Rh2AG522700 Rh2BG536000 Rh2CG507600 Rh2DG545000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 167
AciI CCGC 3 cut(s) 165, 245, 711
AclI AACGTT 1 cut(s) 1191
AcoI YGGCCR 3 cut(s) 373, 718, 836
AcsI RAATTY 1 cut(s) 865
AfiI CCNNNNNNNGG 3 cut(s) 312, 722, 773
AgsI TTSAA 5 cut(s) 9, 263, 479, 496, 997
AjnI CCWGG 4 cut(s) 126, 306, 715, 833
AjuI GAANNNNNNNTTGG 4 cut(s) 373, 405, 977, 1009
AleI CACNNNNGTG 2 cut(s) 182, 911
AluBI AGCT 5 cut(s) 298, 389, 842, 993, 1039
AluI AGCT 5 cut(s) 298, 389, 842, 993, 1039
Alw26I GTCTC 2 cut(s) 144, 667
AoxI GGCC 6 cut(s) 129, 373, 712, 718, 836, 858
ApeKI GCWGC 4 cut(s) 68, 161, 242, 1047
ApoI RAATTY 1 cut(s) 865
AspA2I CCTAGG 1 cut(s) 742
AspS9I GGNCC 5 cut(s) 212, 230, 393, 609, 713
AsuHPI GGTGA 3 cut(s) 547, 683, 715
AsuII TTCGAA 1 cut(s) 803
AvaII GGWCC 4 cut(s) 212, 230, 393, 609
AvrII CCTAGG 1 cut(s) 742
BaeGI GKGCMC 2 cut(s) 365, 1013
BalI TGGCCA 2 cut(s) 720, 838
BarI GAAGNNNNNNTAC 2 cut(s) 255, 287
BbvI GCAGC 4 cut(s) 55, 173, 254, 1059
BccI CCATC 5 cut(s) 101, 140, 305, 566, 584
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 715, 749
BciT130I CCWGG 4 cut(s) 128, 308, 717, 835
BciVI GTATCC 1 cut(s) 1050
BcoDI GTCTC 2 cut(s) 144, 667
BfaI CTAG 2 cut(s) 386, 743
BfmI CTRYAG 2 cut(s) 69, 272
BfuI GTATCC 1 cut(s) 1050
BisI GCNGC 6 cut(s) 69, 162, 165, 243, 712, 1048
BlnI CCTAGG 1 cut(s) 742
BlsI GCNGC 6 cut(s) 70, 163, 166, 244, 713, 1049
Bme1390I CCNGG 4 cut(s) 128, 308, 717, 835
Bme18I GGWCC 4 cut(s) 212, 230, 393, 609
BmgT120I GGNCC 5 cut(s) 212, 230, 393, 609, 713
BmiI GGNNCC 4 cut(s) 97, 232, 268, 279
BmrFI CCNGG 4 cut(s) 128, 308, 717, 835
BmrI ACTGGG 2 cut(s) 465, 657
BmsI GCATC 1 cut(s) 553
BmuI ACTGGG 2 cut(s) 465, 657
Bpu14I TTCGAA 1 cut(s) 803
BpuEI CTTGAG 2 cut(s) 555, 1002
Bsa29I ATCGAT 1 cut(s) 561
BsaJI CCNNGG 8 cut(s) 19, 99, 306, 376, 715, 721, 742, 925
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 768, 798
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 722, 773
Bse1I ACTGG 3 cut(s) 421, 460, 652
BseBI CCWGG 4 cut(s) 128, 308, 717, 835
BseCI ATCGAT 1 cut(s) 561
BseDI CCNNGG 8 cut(s) 19, 99, 306, 376, 715, 721, 742, 925
BseGI GGATG 3 cut(s) 316, 658, 1124
BseLI CCNNNNNNNGG 3 cut(s) 312, 722, 773
BseNI ACTGG 3 cut(s) 421, 460, 652
BseSI GKGCMC 2 cut(s) 365, 1013
BseXI GCAGC 4 cut(s) 55, 173, 254, 1059
BsgI GTGCAG 2 cut(s) 180, 778
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 6 cut(s) 131, 375, 714, 720, 838, 860
BshVI ATCGAT 1 cut(s) 561
BsiSI CCGG 2 cut(s) 215, 281
BslI CCNNNNNNNGG 3 cut(s) 312, 722, 773
BsmAI GTCTC 2 cut(s) 144, 667
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 6 cut(s) 131, 375, 714, 720, 838, 860
Bsp119I TTCGAA 1 cut(s) 803
Bsp1286I GDGCHC 2 cut(s) 365, 1013
Bsp19I CCATGG 1 cut(s) 721
BspACI CCGC 3 cut(s) 165, 245, 711
BspANI GGCC 6 cut(s) 131, 375, 714, 720, 838, 860
BspDI ATCGAT 1 cut(s) 561
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 4 cut(s) 97, 232, 268, 279
BspMAI CTGCAG 1 cut(s) 73
BspT104I TTCGAA 1 cut(s) 803
BsrI ACTGG 3 cut(s) 421, 460, 652
BssECI CCNNGG 8 cut(s) 19, 99, 306, 376, 715, 721, 742, 925
BssT1I CCWWGG 6 cut(s) 19, 99, 376, 721, 742, 925
Bst2UI CCWGG 4 cut(s) 128, 308, 717, 835
Bst4CI ACNGT 5 cut(s) 181, 784, 966, 1062, 1153
BstBI TTCGAA 1 cut(s) 803
BstC8I GCNNGC 2 cut(s) 683, 840
BstDSI CCRYGG 1 cut(s) 721
BstEII GGTNACC 2 cut(s) 460, 960
BstF5I GGATG 3 cut(s) 316, 658, 1124
BstFNI CGCG 1 cut(s) 167
BstMAI GTCTC 2 cut(s) 144, 667
BstMWI GCNNNNNNNGC 2 cut(s) 161, 717
BstNI CCWGG 4 cut(s) 128, 308, 717, 835
BstNSI RCATGY 1 cut(s) 159
BstPI GGTNACC 2 cut(s) 460, 960
BstSCI CCNGG 4 cut(s) 126, 306, 715, 833
BstSFI CTRYAG 2 cut(s) 69, 272
BstSLI GKGCMC 2 cut(s) 365, 1013
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 4 cut(s) 55, 173, 254, 1059
Bsu15I ATCGAT 1 cut(s) 561
BsuI GTATCC 1 cut(s) 1050
BsuRI GGCC 6 cut(s) 131, 375, 714, 720, 838, 860
BsuTUI ATCGAT 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 721
BtsCI GGATG 3 cut(s) 316, 658, 1124
BtsIMutI CAGTG 1 cut(s) 780
Cac8I GCNNGC 2 cut(s) 683, 840
Cfr13I GGNCC 5 cut(s) 212, 230, 393, 609, 713
ClaI ATCGAT 1 cut(s) 561
CseI GACGC 1 cut(s) 161
CspCI CAANNNNNGTGG 2 cut(s) 837, 872
CviAII CATG 4 cut(s) 144, 156, 514, 722
EaeI YGGCCR 3 cut(s) 373, 718, 836
Eco130I CCWWGG 6 cut(s) 19, 99, 376, 721, 742, 925
Eco32I GATATC 2 cut(s) 82, 752
Eco47I GGWCC 4 cut(s) 212, 230, 393, 609
Eco91I GGTNACC 2 cut(s) 460, 960
EcoO109I RGGNCCY 1 cut(s) 230
EcoO65I GGTNACC 2 cut(s) 460, 960
EcoRII CCWGG 4 cut(s) 126, 306, 715, 833
EcoRV GATATC 2 cut(s) 82, 752
EcoT14I CCWWGG 6 cut(s) 19, 99, 376, 721, 742, 925
EcoT22I ATGCAT 1 cut(s) 145
ErhI CCWWGG 6 cut(s) 19, 99, 376, 721, 742, 925
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 4 cut(s) 147, 159, 517, 725
FatI CATG 4 cut(s) 143, 155, 513, 721
FauNDI CATATG 1 cut(s) 940
Fnu4HI GCNGC 6 cut(s) 69, 162, 165, 243, 712, 1048
FokI GGATG 3 cut(s) 323, 665, 1111
Fsp4HI GCNGC 6 cut(s) 69, 162, 165, 243, 712, 1048
FspBI CTAG 2 cut(s) 386, 743
GluI GCNGC 6 cut(s) 69, 162, 165, 243, 712, 1048
HaeIII GGCC 6 cut(s) 131, 375, 714, 720, 838, 860
HapII CCGG 2 cut(s) 215, 281
HgaI GACGC 1 cut(s) 161
Hin1II CATG 4 cut(s) 147, 159, 517, 725
HinfI GANTC 3 cut(s) 169, 594, 777
HpaII CCGG 2 cut(s) 215, 281
HphI GGTGA 3 cut(s) 547, 683, 715
Hpy188I TCNGA 2 cut(s) 356, 1129
Hpy188III TCNNGA 7 cut(s) 85, 572, 697, 976, 997, 1019, 1158
HpyAV CCTTC 3 cut(s) 187, 257, 694
HpyCH4III ACNGT 5 cut(s) 181, 784, 966, 1062, 1153
HpyCH4IV ACGT 4 cut(s) 519, 897, 1140, 1191
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 717
HpySE526I ACGT 4 cut(s) 519, 897, 1140, 1191
Hsp92II CATG 4 cut(s) 147, 159, 517, 725
LmnI GCTCC 2 cut(s) 95, 283
Lsp1109I GCAGC 4 cut(s) 55, 173, 254, 1059
LweI GCATC 1 cut(s) 553
MaeI CTAG 2 cut(s) 386, 743
MaeII ACGT 4 cut(s) 519, 897, 1140, 1191
MaeIII GTNAC 5 cut(s) 460, 625, 671, 778, 960
MboII GAAGA 1 cut(s) 759
MhlI GDGCHC 2 cut(s) 365, 1013
MlsI TGGCCA 2 cut(s) 720, 838
MluCI AATT 4 cut(s) 403, 427, 466, 865
MluNI TGGCCA 2 cut(s) 720, 838
MlyI GAGTC 2 cut(s) 163, 786
MnlI CCTC 9 cut(s) 221, 350, 554, 579, 622, 766, 820, 871, 871
Mox20I TGGCCA 2 cut(s) 720, 838
Mph1103I ATGCAT 1 cut(s) 145
MscI TGGCCA 2 cut(s) 720, 838
MseI TTAA 4 cut(s) 56, 828, 1167, 1198
MslI CAYNNNNRTG 4 cut(s) 182, 887, 911, 1129
Msp20I TGGCCA 2 cut(s) 720, 838
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 215, 281
MspR9I CCNGG 4 cut(s) 128, 308, 717, 835
MvaI CCWGG 4 cut(s) 128, 308, 717, 835
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 161, 717
NcoI CCATGG 1 cut(s) 721
NdeI CATATG 1 cut(s) 940
NlaIII CATG 4 cut(s) 147, 159, 517, 725
NlaIV GGNNCC 4 cut(s) 97, 232, 268, 279
NmuCI GTSAC 2 cut(s) 671, 778
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 1 cut(s) 159
NspV TTCGAA 1 cut(s) 803
OliI CACNNNNGTG 2 cut(s) 182, 911
PfeI GAWTC 1 cut(s) 594
PkrI GCNGC 6 cut(s) 70, 163, 166, 244, 713, 1049
PleI GAGTC 2 cut(s) 163, 785
PpsI GAGTC 2 cut(s) 163, 785
PpuMI RGGWCCY 1 cut(s) 230
Psp1406I AACGTT 1 cut(s) 1191
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 4 cut(s) 126, 306, 715, 833
PspEI GGTNACC 2 cut(s) 460, 960
PspGI CCWGG 4 cut(s) 126, 306, 715, 833
PspN4I GGNNCC 4 cut(s) 97, 232, 268, 279
PspPI GGNCC 5 cut(s) 212, 230, 393, 609, 713
PspPPI RGGWCCY 1 cut(s) 230
PstI CTGCAG 1 cut(s) 73
RseI CAYNNNNRTG 4 cut(s) 182, 887, 911, 1129
SaqAI TTAA 4 cut(s) 56, 828, 1167, 1198
SatI GCNGC 6 cut(s) 69, 162, 165, 243, 712, 1048
Sau96I GGNCC 5 cut(s) 212, 230, 393, 609, 713
SchI GAGTC 2 cut(s) 163, 786
ScrFI CCNGG 4 cut(s) 128, 308, 717, 835
SduI GDGCHC 2 cut(s) 365, 1013
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 2 cut(s) 69, 272
SfuI TTCGAA 1 cut(s) 803
SinI GGWCC 4 cut(s) 212, 230, 393, 609
SmiMI CAYNNNNRTG 4 cut(s) 182, 887, 911, 1129
SmlI CTYRAG 2 cut(s) 570, 1017
SmoI CTYRAG 2 cut(s) 570, 1017
Sse9I AATT 4 cut(s) 403, 427, 466, 865
SsiI CCGC 3 cut(s) 165, 245, 711
SspI AATATT 1 cut(s) 203
SspMI CTAG 2 cut(s) 386, 743
StyD4I CCNGG 4 cut(s) 126, 306, 715, 833
StyI CCWWGG 6 cut(s) 19, 99, 376, 721, 742, 925
TaaI ACNGT 5 cut(s) 181, 784, 966, 1062, 1153
TaiI ACGT 4 cut(s) 522, 900, 1143, 1194
TaqI TCGA 6 cut(s) 336, 546, 561, 696, 803, 876
TaqII GACCGA 1 cut(s) 597
TasI AATT 4 cut(s) 403, 427, 466, 865
TauI GCSGC 2 cut(s) 167, 714
TfiI GAWTC 1 cut(s) 594
Tru1I TTAA 4 cut(s) 56, 828, 1167, 1198
Tru9I TTAA 4 cut(s) 56, 828, 1167, 1198
TscAI CASTG 1 cut(s) 787
TseFI GTSAC 2 cut(s) 671, 778
TseI GCWGC 4 cut(s) 68, 161, 242, 1047
Tsp45I GTSAC 2 cut(s) 671, 778
TspDTI ATGAA 2 cut(s) 530, 905
TspGWI ACGGA 2 cut(s) 337, 690
TspRI CASTG 1 cut(s) 787
VpaK11BI GGWCC 4 cut(s) 212, 230, 393, 609
XapI RAATTY 1 cut(s) 865
XceI RCATGY 1 cut(s) 159
XmaJI CCTAGG 1 cut(s) 742
XspI CTAG 2 cut(s) 386, 743
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.