FvH4_6g43650

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016625
Physical Location & Seq
Reverse (-)
33742345 .. 33743663
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43650.t1

Sequence Viewer

Length: 501 bp
ATGTGTTATGTTGGCAAAGCTACAAAGATCTTCATCTTCGTGGTCACAGTTCTTGTTGTTGTTGGCCTCGTCTTGGGTTTCGGGATTCTCCGCCATGGCCTCCACGACAAGTCCCACAAATGCTCCGGCGACTCCTGCAGCTCCTCCGACTCTTCCCCTCTCCAGTTTCCCTCCCCCACTTCTACCTCCGATCCCATTCTCACCCCACCTAACCCCACACTAAGCCCATCTCCACCGAGCTCCACTCCCACCCCGCCCGCCTCAGATTTCAGCCCACCTCCGCCGTCAACGTTCTCCACTCCGACCCCACCTCCGCCTGACCCGACTTCCAATCCACCGCCGCCAATCCCTGCTTCCAATCCGCCACCGCCAATAACTGCTTCCAATCCGCCACCGCCGATCGCTATTTCCAATCAGCCCCCGCCGCCGGTTACGTTGGCAGCGCCGCCGTACAGTCCGCCGAGTGATGTACAATCGACACCAGGTCCTGTCCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

16.88

Weight (kDa)

5.98

Isoelectric Point (pI)

79.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22070
fragaria_vesca FvH4_6g43650
prunus_persica Prupe.3G221700_v2.0.a1
pyrus_communis pycom09g02720 pycom17g08890
rosa_chinensis RchiOBHm_Chr2g0160271
rosa_laevigata RLG00000021209
rosa_multiflora Rmu_sc0000403.1_g000001 Rmu_sc0008269.1_g000005
rosa_roxburghii Rroxscaffold_2G00089890
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG548000 Rh2CG532300
rosa_wichuraiana Rw2G045340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 290
AclWI GGATC 1 cut(s) 185
AfaI GTAC 2 cut(s) 452, 471
AfiI CCNNNNNNNGG 2 cut(s) 73, 427
AhdI GACNNNNNGTC 1 cut(s) 483
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 4 cut(s) 337, 364, 369, 396
AluBI AGCT 3 cut(s) 20, 141, 240
AluI AGCT 3 cut(s) 20, 141, 240
Alw21I GWGCWC 1 cut(s) 242
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 2 cut(s) 64, 97
ApeKI GCWGC 2 cut(s) 138, 440
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 1 cut(s) 485
BanII GRGCYC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 150, 452
BccI CCATC 1 cut(s) 235
BceAI ACGGC 2 cut(s) 268, 433
BciT130I CCWGG 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 446
BglII AGATCT 1 cut(s) 27
BisI GCNGC 5 cut(s) 139, 341, 425, 441, 446
BlsI GCNGC 5 cut(s) 140, 342, 426, 442, 447
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 485
BmeRI GACNNNNNGTC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 485
BmrFI CCNGG 1 cut(s) 483
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpmI CTGGAG 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 295, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 427
Bse118I RCCGGY 1 cut(s) 427
Bse1I ACTGG 1 cut(s) 163
Bse8I GATNNNNATC 1 cut(s) 32
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 73, 427
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 150, 452
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 2 cut(s) 66, 99
BsiEI CGRYCG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 242
BsiSI CCGG 2 cut(s) 126, 428
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 73, 427
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 2 cut(s) 66, 99
Bsp1286I GDGCHC 1 cut(s) 242
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 3 cut(s) 27, 190, 399
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 2 cut(s) 66, 99
BspCNI CTCAG 1 cut(s) 275
BspMAI CTGCAG 1 cut(s) 140
BspPI GGATC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 427
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 3 cut(s) 27, 190, 399
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 49, 455
Bst6I CTCTTC 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 221, 262, 498
BstDSI CCRYGG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 3 cut(s) 30, 193, 402
BstMBI GATC 3 cut(s) 27, 190, 399
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 2 cut(s) 135, 424
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 150, 452
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 2 cut(s) 66, 99
BtgI CCRYGG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 1 cut(s) 445
Cfr10I RCCGGY 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 485
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 2 cut(s) 451, 470
CviAII CATG 2 cut(s) 95, 494
CviJI RGCY 8 cut(s) 20, 66, 99, 141, 225, 240, 273, 418
CviKI_1 RGCY 8 cut(s) 20, 66, 99, 141, 225, 240, 273, 418
CviQI GTAC 2 cut(s) 451, 470
DdeI CTNAG 3 cut(s) 221, 262, 498
DpnI GATC 3 cut(s) 29, 192, 401
DpnII GATC 3 cut(s) 27, 190, 399
DriI GACNNNNNGTC 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 157
EciI GGCGGA 6 cut(s) 80, 270, 303, 351, 378, 447
Ecl136II GAGCTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 485
Eco53kI GAGCTC 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 2 cut(s) 98, 497
FaiI YATR 3 cut(s) 9, 96, 495
FaqI GGGAC 1 cut(s) 97
FatI CATG 2 cut(s) 94, 493
FauI CCCGC 3 cut(s) 261, 265, 429
Fnu4HI GCNGC 5 cut(s) 139, 341, 425, 441, 446
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 5 cut(s) 139, 341, 425, 441, 446
GlaI GCGC 1 cut(s) 444
GluI GCNGC 5 cut(s) 139, 341, 425, 441, 446
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 2 cut(s) 66, 99
HapII CCGG 2 cut(s) 126, 428
HhaI GCGC 1 cut(s) 445
Hin1II CATG 2 cut(s) 98, 497
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 3 cut(s) 85, 131, 149
HpaII CCGG 2 cut(s) 126, 428
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 4 cut(s) 148, 190, 265, 303
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4III ACNGT 2 cut(s) 49, 455
HpyCH4IV ACGT 2 cut(s) 290, 434
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 424
HpyF3I CTNAG 3 cut(s) 221, 262, 498
HpySE526I ACGT 2 cut(s) 290, 434
Hsp92II CATG 2 cut(s) 98, 497
HspAI GCGC 1 cut(s) 443
Kzo9I GATC 3 cut(s) 27, 190, 399
LmnI GCTCC 3 cut(s) 128, 146, 245
LpnPI CCDG 8 cut(s) 139, 148, 176, 330, 363, 441, 468, 495
Lsp1109I GCAGC 2 cut(s) 150, 452
MabI ACCWGGT 1 cut(s) 481
MaeII ACGT 2 cut(s) 290, 434
MaeIII GTNAC 2 cut(s) 43, 430
MalI GATC 3 cut(s) 29, 192, 401
MboI GATC 3 cut(s) 27, 190, 399
MboII GAAGA 3 cut(s) 22, 28, 144
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 242
MlyI GAGTC 2 cut(s) 125, 143
MmeI TCCRAC 2 cut(s) 171, 326
MnlI CCTC 9 cut(s) 77, 110, 154, 168, 181, 196, 271, 288, 321
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 2 cut(s) 126, 428
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 2 cut(s) 135, 424
NcoI CCATGG 1 cut(s) 94
NdeII GATC 3 cut(s) 27, 190, 399
NlaIII CATG 2 cut(s) 98, 497
NmeAIII GCCGAG 1 cut(s) 486
NmuCI GTSAC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 5 cut(s) 140, 342, 426, 442, 447
Ple19I CGATCG 1 cut(s) 402
PleI GAGTC 2 cut(s) 125, 143
PpsI GAGTC 2 cut(s) 125, 143
PpuMI RGGWCCY 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 242
Psp1406I AACGTT 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspPI GGNCC 1 cut(s) 485
PspPPI RGGWCCY 1 cut(s) 485
PstI CTGCAG 1 cut(s) 140
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 27
PvuI CGATCG 1 cut(s) 402
RsaI GTAC 2 cut(s) 452, 471
RsaNI GTAC 2 cut(s) 451, 470
RseI CAYNNNNRTG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 242
SatI GCNGC 5 cut(s) 139, 341, 425, 441, 446
Sau3AI GATC 3 cut(s) 27, 190, 399
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 2 cut(s) 125, 143
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 1 cut(s) 242
SexAI ACCWGGT 1 cut(s) 481
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 38
SstI GAGCTC 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 2 cut(s) 49, 455
TaiI ACGT 2 cut(s) 293, 437
TaqI TCGA 1 cut(s) 476
TatI WGTACW 1 cut(s) 469
TauI GCSGC 3 cut(s) 343, 427, 448
TfiI GAWTC 1 cut(s) 85
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 138, 440
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.