Rmu_sc0000403.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000403.1
OG0016625
Physical Location & Seq
Forward (+)
1 .. 291
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000403.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
cagcccaccttcagcccgcctccaccgagctccactcccaccccgcctacctcagatttcagcccacctccgccgacaacgatctccactccgaccccacctccgcccgacccgacttccaatccgccgccgcaaatccctgcttccaatccgccaccgccaatcactgtttccaatccgccaccgccaatcacggtttccaatcagcccccgccgccggtttctttggcagcgccgccgtacagtccgccgagtggggtgcaattgacgccgggtcctgtccatgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

9.61

Weight (kDa)

4.2

Isoelectric Point (pI)

87.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22070
fragaria_vesca FvH4_6g43650
prunus_persica Prupe.3G221700_v2.0.a1
pyrus_communis pycom09g02720 pycom17g08890
rosa_chinensis RchiOBHm_Chr2g0160271
rosa_laevigata RLG00000021209
rosa_multiflora Rmu_sc0000403.1_g000001 Rmu_sc0008269.1_g000005
rosa_roxburghii Rroxscaffold_2G00089890
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG548000 Rh2CG532300
rosa_wichuraiana Rw2G045340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 217, 254
AhdI GACNNNNNGTC 1 cut(s) 273
AjuI GAANNNNNNNTTGG 4 cut(s) 154, 181, 186, 213
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BcnI CCSGG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 236
BisI GCNGC 5 cut(s) 128, 131, 215, 231, 236
BlsI GCNGC 5 cut(s) 129, 132, 216, 232, 237
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 275
BmeRI GACNNNNNGTC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 273
BplI GAGNNNNNCTC 2 cut(s) 19, 51
BpuMI CCSGG 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 254
Bse118I RCCGGY 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 217, 254
BseMII CTCAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 2 cut(s) 218, 272
BslI CCNNNNNNNGG 2 cut(s) 217, 254
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 217
BssMI GATC 1 cut(s) 81
BssNI GRCGYC 1 cut(s) 269
Bst4CI ACNGT 3 cut(s) 169, 196, 245
BstACI GRCGYC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 52, 288
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 214, 268
BstSCI CCNGG 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 17
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 275
CseI GACGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 284
CviJI RGCY 5 cut(s) 4, 15, 30, 63, 208
CviKI_1 RGCY 5 cut(s) 4, 15, 30, 63, 208
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 52, 288
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DriI GACNNNNNGTC 1 cut(s) 273
Eam1105I GACNNNNNGTC 1 cut(s) 273
EciI GGCGGA 6 cut(s) 60, 93, 114, 141, 168, 237
Ecl136II GAGCTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 1 cut(s) 287
FaiI YATR 1 cut(s) 285
FatI CATG 1 cut(s) 283
FauI CCCGC 3 cut(s) 24, 51, 219
Fnu4HI GCNGC 5 cut(s) 128, 131, 215, 231, 236
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 5 cut(s) 128, 131, 215, 231, 236
GlaI GCGC 1 cut(s) 234
GluI GCNGC 5 cut(s) 128, 131, 215, 231, 236
HaeII RGCGCY 1 cut(s) 236
HapII CCGG 2 cut(s) 218, 272
HgaI GACGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 1 cut(s) 287
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HpaII CCGG 2 cut(s) 218, 272
Hpy188I TCNGA 2 cut(s) 55, 93
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 3 cut(s) 169, 196, 245
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 268
HpyF3I CTNAG 2 cut(s) 52, 288
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 1 cut(s) 287
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 3 cut(s) 153, 231, 285
Lsp1109I GCAGC 1 cut(s) 242
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MfeI CAATTG 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 4 cut(s) 30, 61, 78, 111
MspI CCGG 2 cut(s) 218, 272
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 214, 268
NciI CCSGG 1 cut(s) 273
NdeII GATC 1 cut(s) 81
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 1 cut(s) 276
NmeAIII GCCGAG 1 cut(s) 276
PkrI GCNGC 5 cut(s) 129, 132, 216, 232, 237
PpuMI RGGWCCY 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 32
SatI GCNGC 5 cut(s) 128, 131, 215, 231, 236
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 32
SetI ASST 5 cut(s) 11, 32, 53, 70, 103
SinI GGWCC 1 cut(s) 275
Sse9I AATT 1 cut(s) 263
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 3 cut(s) 169, 196, 245
TasI AATT 1 cut(s) 263
TauI GCSGC 4 cut(s) 130, 133, 217, 238
TscAI CASTG 1 cut(s) 172
TseI GCWGC 1 cut(s) 230
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.