pycom09g02720

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016625
Physical Location & Seq
Forward (+)
2013152 .. 2013811
660 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02720.2

Sequence Viewer

Length: 558 bp
ATGTGCTATGTGGGAAAAGCAACAAAGATCTTCATTTTTTTGGTGACAGTGTTGGTAGTGTTCGGGCTGGTTTTCGGATTAGGGGTTCTCCGCCACGGCCTCCATAAATCCCACAAATGCTCCGCCGATTCGGATTCCTGCAGCCCTCTCCCCTTCCCACCTATTCAATTCCCTAACCCCAGTTCCGGTTCGAACCAGCCCAGCTCACCAAATCCCGATCCAACTCTGACCCAGCCCAGCCCACCTAACGCCAATTTCAACCCGCCTCCGCCGCCCAACCCAGATTTAACCCCGTCTCCGCCGACGTCAACTTCAAGCCCGCCTCCTCCAACTCCGCCGACAACAATTCTAAGCCCACCTCCGCCAACTACGCCGACATCAATTCTGAGGCCACCTCCGCCGACTCCACCTCCGCCGTCATCAATTCTGAGTCCACCTCCGCCTAACCCAACTTCCAATCCACCATCTTTTCAGCCGTCTCCGCCAGCTACAAAGGCGCCGCCGCCGTTCAATCCGCCAAGTGAAGCCCAGGTGACTCCAGGTCCTGCCCGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.11

Weight (kDa)

8.99

Isoelectric Point (pI)

89.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22070
fragaria_vesca FvH4_6g43650
prunus_persica Prupe.3G221700_v2.0.a1
pyrus_communis pycom09g02720 pycom17g08890
rosa_chinensis RchiOBHm_Chr2g0160271
rosa_laevigata RLG00000021209
rosa_multiflora Rmu_sc0000403.1_g000001 Rmu_sc0008269.1_g000005
rosa_roxburghii Rroxscaffold_2G00089890
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG548000 Rh2CG532300
rosa_wichuraiana Rw2G045340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 496
AclWI GGATC 1 cut(s) 212
AcyI GRCGYC 2 cut(s) 305, 497
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 4 cut(s) 167, 259, 315, 511
AhdI GACNNNNNGTC 1 cut(s) 540
AjnI CCWGG 2 cut(s) 528, 538
AloI GAACNNNNNNTCC 2 cut(s) 69, 101
AluBI AGCT 2 cut(s) 204, 488
AluI AGCT 2 cut(s) 204, 488
Alw26I GTCTC 2 cut(s) 300, 483
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 2 cut(s) 97, 389
ApeKI GCWGC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 542
AsuHPI GGTGA 3 cut(s) 55, 198, 544
AsuII TTCGAA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 542
BanI GGYRCC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 153
BccI CCATC 1 cut(s) 472
BceAI ACGGC 4 cut(s) 112, 400, 460, 490
BciT130I CCWGG 2 cut(s) 530, 540
BcoDI GTCTC 2 cut(s) 300, 483
BfmI CTRYAG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 500
BglII AGATCT 1 cut(s) 27
BisI GCNGC 4 cut(s) 142, 272, 500, 503
BlsI GCNGC 4 cut(s) 143, 273, 501, 504
Bme1390I CCNGG 2 cut(s) 530, 540
Bme18I GGWCC 1 cut(s) 542
BmeRI GACNNNNNGTC 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 2 cut(s) 530, 540
BmrI ACTGGG 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 174
BplI GAGNNNNNCTC 4 cut(s) 379, 411, 421, 453
BpmI CTGGAG 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 191
BsaHI GRCGYC 2 cut(s) 305, 497
BsaJI CCNNGG 2 cut(s) 94, 528
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 6 cut(s) 104, 134, 280, 310, 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 530, 540
BseDI CCNNGG 2 cut(s) 94, 528
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 377, 419
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 315
BseXI GCAGC 1 cut(s) 153
BseYI CCCAGC 3 cut(s) 200, 231, 236
BshFI GGCC 2 cut(s) 99, 391
BshNI GGYRCC 1 cut(s) 496
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 2 cut(s) 300, 483
BsmBI CGTCTC 2 cut(s) 300, 483
BsnI GGCC 2 cut(s) 99, 391
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 2 cut(s) 27, 217
BspANI GGCC 2 cut(s) 99, 391
BspCNI CTCAG 2 cut(s) 378, 420
BspLI GGNNCC 1 cut(s) 498
BspMAI CTGCAG 1 cut(s) 143
BspPI GGATC 1 cut(s) 212
BspT104I TTCGAA 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 496
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 94, 528
BssMI GATC 2 cut(s) 27, 217
BssNI GRCGYC 2 cut(s) 305, 497
Bst2UI CCWGG 2 cut(s) 530, 540
Bst4CI ACNGT 1 cut(s) 49
BstACI GRCGYC 2 cut(s) 305, 497
BstBI TTCGAA 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 320, 486
BstDEI CTNAG 3 cut(s) 350, 386, 428
BstDSI CCRYGG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 2 cut(s) 30, 220
BstMAI GTCTC 2 cut(s) 300, 483
BstMBI GATC 2 cut(s) 27, 217
BstMWI GCNNNNNNNGC 5 cut(s) 271, 370, 397, 481, 494
BstNI CCWGG 2 cut(s) 530, 540
BstSCI CCNGG 2 cut(s) 528, 538
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 2 cut(s) 99, 391
BtgI CCRYGG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 320, 486
CaiI CAGNNNCTG 1 cut(s) 545
CfoI GCGC 1 cut(s) 499
Cfr13I GGNCC 1 cut(s) 542
DdeI CTNAG 3 cut(s) 350, 386, 428
DinI GGCGCC 1 cut(s) 498
DpnI GATC 2 cut(s) 29, 219
DpnII GATC 2 cut(s) 27, 217
DriI GACNNNNNGTC 1 cut(s) 540
Eam1105I GACNNNNNGTC 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 542
EcoRII CCWGG 2 cut(s) 528, 538
EgeI GGCGCC 1 cut(s) 498
EheI GGCGCC 1 cut(s) 498
Esp3I CGTCTC 2 cut(s) 300, 483
FaiI YATR 2 cut(s) 9, 105
FauI CCCGC 2 cut(s) 270, 327
Fnu4HI GCNGC 4 cut(s) 142, 272, 500, 503
Fsp4HI GCNGC 4 cut(s) 142, 272, 500, 503
GlaI GCGC 1 cut(s) 498
GluI GCNGC 4 cut(s) 142, 272, 500, 503
GsaI CCCAGC 3 cut(s) 204, 235, 240
GsuI CTGGAG 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 2 cut(s) 99, 391
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 2 cut(s) 305, 497
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 5 cut(s) 128, 134, 403, 430, 535
HpaII CCGG 1 cut(s) 186
HphI GGTGA 3 cut(s) 55, 198, 544
Hpy166II GTNNAC 2 cut(s) 309, 434
Hpy188I TCNGA 5 cut(s) 77, 133, 228, 387, 429
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 2 cut(s) 309, 434
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 5 cut(s) 271, 370, 397, 481, 494
HpyF3I CTNAG 3 cut(s) 350, 386, 428
HpySE526I ACGT 1 cut(s) 305
Hsp92I GRCGYC 2 cut(s) 305, 497
HspAI GCGC 1 cut(s) 497
KasI GGCGCC 1 cut(s) 496
Kzo9I GATC 2 cut(s) 27, 217
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 153
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 43, 532
MalI GATC 2 cut(s) 29, 219
MboI GATC 2 cut(s) 27, 217
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 27
MluCI AATT 5 cut(s) 167, 253, 345, 381, 423
Mly113I GGCGCC 1 cut(s) 497
MlyI GAGTC 3 cut(s) 397, 439, 529
MmeI TCCRAC 2 cut(s) 245, 353
MseI TTAA 1 cut(s) 287
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 530, 540
MvaI CCWGG 2 cut(s) 530, 540
MwoI GCNNNNNNNGC 5 cut(s) 271, 370, 397, 481, 494
NarI GGCGCC 1 cut(s) 497
NdeII GATC 2 cut(s) 27, 217
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 2 cut(s) 43, 532
NspV TTCGAA 1 cut(s) 191
PfeI GAWTC 2 cut(s) 128, 134
PkrI GCNGC 4 cut(s) 143, 273, 501, 504
PleI GAGTC 3 cut(s) 397, 438, 529
PluTI GGCGCC 1 cut(s) 500
PpsI GAGTC 3 cut(s) 397, 438, 529
PpuMI RGGWCCY 1 cut(s) 542
Psp5II RGGWCCY 1 cut(s) 542
Psp6I CCWGG 2 cut(s) 528, 538
PspFI CCCAGC 3 cut(s) 200, 231, 236
PspGI CCWGG 2 cut(s) 528, 538
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 542
PspPPI RGGWCCY 1 cut(s) 542
PstI CTGCAG 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 27
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 4 cut(s) 142, 272, 500, 503
Sau3AI GATC 2 cut(s) 27, 217
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 3 cut(s) 397, 439, 529
ScrFI CCNGG 2 cut(s) 530, 540
SfcI CTRYAG 1 cut(s) 139
SfoI GGCGCC 1 cut(s) 498
SfuI TTCGAA 1 cut(s) 191
SinI GGWCC 1 cut(s) 542
Sse9I AATT 5 cut(s) 167, 253, 345, 381, 423
SspDI GGCGCC 1 cut(s) 496
StyD4I CCNGG 2 cut(s) 528, 538
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 191
TasI AATT 5 cut(s) 167, 253, 345, 381, 423
TauI GCSGC 3 cut(s) 274, 502, 505
TfiI GAWTC 2 cut(s) 128, 134
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 2 cut(s) 43, 532
TseI GCWGC 1 cut(s) 141
Tsp45I GTSAC 2 cut(s) 43, 532
TspDTI ATGAA 1 cut(s) 22
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 542
ZraI GACGTC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.