Rorug02G0482500

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011928
Physical Location & Seq
Reverse (-)
61232625 .. 61236659
4035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0482500.1

Sequence Viewer

Length: 1437 bp
ATGTTATGCTTCAATCGTGAATTAGGGTTTGTGTGCAGATCGGTGTTGAGGTTTCTTGACAGATCGGTTGCCGGAGCTATGGGTTGCTTCTTCGGTTGCTTCAGAGTCAGGGACGATCGCCATCTCCGCTCTCGGCCTCACCTCGTTTCTCATCCCTCGCGCTCGGGAGCTGTGGTGTCTCAGAATCGTTTGTCATCTCTATTTTTAGCTGAAGAGAGAGGAGATTCTCCAGCCAGAGATCAGGAAAGTCCTAGTTATGGGACTCCACAAATTGACAAGGAGCTCAAGAACGAGGCCAAATTTCTTAAGGCCTGTGGTACTATAGTTGAGACCCCAGTTGAAATTCGGAAAGCTTCAAAGTTAATTGGCTCACCCCATCATGATAGAGATTCAGAGCCCTCAAAATTCAACTCATGGCTTCCCAACACATCCATTAAAAAGCTTCAGCAGGAGAATCAACCAGAGCAGCCTCCTACACCTGTTAAACTTTTTGAAGAGTGGGGAAAGGGGTCAGAGCATACACCTATCAGTTATGAGACAAACCAACAGGGTACTGGAAGAAGCTCTCTCAGCTCTACTGAAGCCACAGATGTCCAGTGCAGGGGCAAGTCTGTTCGCTTTGAATGTGATTTTGATACAGCATCCTCAAAAGGTTCTTCATCCGGTAACTGTAGCAGGAGTGCAAAAATAGCTGAAACTCCAGGAAAACAGGGCACATCAAAGTATTTAGATTATCCAACCCCACTGACTCTTTCTGACGAGATGCAGACACCTGGAACAGTTTTCCCATCAAGCCAGAGAACTTTTCCTAATGGAAAGTCTCGAATCAGGTCCCAGTATGTGTATTCAGTTCCAAACCCTGAGGGCATCTCTCGGTGGAATGTGCTGACAGAGGAAGATTCTAACTCACATGGGTTTTCAGGTGAGCCTAGTGAGTCTCTCAAACAATCCGGAAATGCAACCCCCATATCAGAAGAGGGGCAAAAAGAAATTTCATCTGGAAAAGACTTACAGGCGGAATCAAGTATGTCCTCCTGGCAGAAGCCAGTGACATCTACTCAAGATGACAACAATCTGAAGTTGGGAGACGCTTCTGGCAGAAATCGTTATTTTGGCAGAACTCCTGGGGACAGGCCTATAATTGGGTTGGTTGCTACTCACTGGAATGAAGATGACCTTACTCGTATCTCCCCCAAGTGGTGGGACGGGAAGGGAATCCCAAATTCAACCAATAAATACAAAGAGGATCAGAAAGTGAGTTGGCATGCGACACCGTTTGAGGAGAGGTTGGAGAAGGCATTGTCTGAAGAAAGTTTCATTTCTCAGAGAAAAAACATAGGGGGAATGCCCATTGCGTTTGATGAGAACGAAGAAAGTGATACTGCTCTTTCTCAGTTGCAATCTTCATCCCAGCCAAAGTCAGTGGTTTCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

478

Amino Acids

53.05

Weight (kDa)

6.36

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32300 AT2G32300
fragaria_vesca FvH4_6g43640 FvH4_6g43640
malus_domestica MD09G1104100.v1.1 MD17G1091800.v1.1
prunus_persica Prupe.3G221600_v2.0.a1
pyrus_communis pycom09g02730
rosa_chinensis RchiOBHm_Chr2g0160261
rosa_laevigata RLG00000021208
rosa_multiflora Rmu_sc0000403.1_g000002 Rmu_sc0008269.1_g000006
rosa_roxburghii Rroxscaffold_2G00089900
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG547900 Rh2BG561500 Rh2CG532200 Rh2DG569900
rosa_wichuraiana Rw2G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1200
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 950
AciI CCGC 2 cut(s) 127, 1016
AclWI GGATC 1 cut(s) 1254
AcsI RAATTY 5 cut(s) 299, 342, 404, 990, 1222
AcuI CTGAAG 6 cut(s) 85, 231, 428, 600, 1097, 1326
AfaI GTAC 2 cut(s) 319, 553
AfiI CCNNNNNNNGG 5 cut(s) 257, 601, 1142, 1197, 1200
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 7 cut(s) 13, 341, 357, 409, 494, 623, 1227
AjnI CCWGG 4 cut(s) 700, 772, 1034, 1123
AluBI AGCT 9 cut(s) 77, 170, 209, 283, 353, 442, 564, 573, 692
AluI AGCT 9 cut(s) 77, 170, 209, 283, 353, 442, 564, 573, 692
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 6 cut(s) 183, 323, 530, 825, 942, 1080
AlwI GGATC 1 cut(s) 1254
Ama87I CYCGRG 1 cut(s) 163
Aor13HI TCCGGA 1 cut(s) 950
AoxI GGCC 4 cut(s) 134, 294, 309, 1133
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 5 cut(s) 299, 342, 404, 990, 1222
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 831
AsuHPI GGTGA 3 cut(s) 131, 363, 935
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 831
AxyI CCTNAGG 1 cut(s) 861
BaeGI GKGCMC 1 cut(s) 716
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BanII GRGCYC 2 cut(s) 285, 399
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 478
BccI CCATC 3 cut(s) 129, 384, 796
BciT130I CCWGG 4 cut(s) 702, 774, 1036, 1125
BcoDI GTCTC 6 cut(s) 183, 323, 530, 825, 942, 1080
BfaI CTAG 2 cut(s) 252, 930
BfmI CTRYAG 2 cut(s) 321, 670
BfrI CTTAAG 1 cut(s) 305
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
Bme1390I CCNGG 4 cut(s) 702, 774, 1036, 1125
Bme18I GGWCC 1 cut(s) 831
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 831
BmiI GGNNCC 1 cut(s) 833
BmrFI CCNGG 4 cut(s) 702, 774, 1036, 1125
BmrI ACTGGG 2 cut(s) 329, 829
BmsI GCATC 3 cut(s) 650, 753, 876
BmuI ACTGGG 2 cut(s) 329, 829
BplI GAGNNNNNCTC 2 cut(s) 854, 886
BpmI CTGGAG 2 cut(s) 213, 684
BpuEI CTTGAG 2 cut(s) 269, 1044
BsaBI GATNNNNATC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 1124
BsaWI WCCGGW 2 cut(s) 662, 950
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 5 cut(s) 257, 601, 1142, 1197, 1200
Bse1I ACTGG 6 cut(s) 335, 559, 595, 835, 1046, 1166
Bse21I CCTNAGG 1 cut(s) 861
Bse3DI GCAATG 1 cut(s) 1350
Bse8I GATNNNNATC 1 cut(s) 120
BseAI TCCGGA 1 cut(s) 950
BseBI CCWGG 4 cut(s) 702, 774, 1036, 1125
BseDI CCNNGG 1 cut(s) 1124
BseGI GGATG 5 cut(s) 151, 428, 641, 659, 1406
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 5 cut(s) 257, 601, 1142, 1197, 1200
BseMI GCAATG 1 cut(s) 1350
BseMII CTCAG 5 cut(s) 194, 583, 852, 1337, 1406
BseNI ACTGG 6 cut(s) 335, 559, 595, 835, 1046, 1166
BseRI GAGGAG 2 cut(s) 234, 1295
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 1 cut(s) 478
BseYI CCCAGC 1 cut(s) 1410
BsgI GTGCAG 2 cut(s) 55, 619
Bsh1236I CGCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 4 cut(s) 136, 296, 311, 1135
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 3 cut(s) 72, 663, 951
BslFI GGGAC 5 cut(s) 125, 274, 817, 1142, 1217
BslI CCNNNNNNNGG 5 cut(s) 257, 601, 1142, 1197, 1200
BsmAI GTCTC 6 cut(s) 183, 323, 530, 825, 942, 1080
BsmBI CGTCTC 1 cut(s) 1080
BsmFI GGGAC 5 cut(s) 125, 274, 817, 1142, 1217
BsmI GAATGC 1 cut(s) 1350
BsnI GGCC 4 cut(s) 136, 296, 311, 1135
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 3 cut(s) 285, 399, 716
Bsp13I TCCGGA 1 cut(s) 950
Bsp143I GATC 5 cut(s) 38, 62, 115, 238, 1246
BspACI CCGC 2 cut(s) 127, 1016
BspANI GGCC 4 cut(s) 136, 296, 311, 1135
BspCNI CTCAG 5 cut(s) 193, 582, 853, 1336, 1405
BspEI TCCGGA 1 cut(s) 950
BspFNI CGCG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 833
BspPI GGATC 1 cut(s) 1254
BspTI CTTAAG 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 323
BsrBI CCGCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 1350
BsrI ACTGG 6 cut(s) 335, 559, 595, 835, 1046, 1166
BssECI CCNNGG 1 cut(s) 1124
BssMI GATC 5 cut(s) 38, 62, 115, 238, 1246
Bst2UI CCWGG 4 cut(s) 702, 774, 1036, 1125
Bst4CI ACNGT 3 cut(s) 671, 781, 1275
Bst6I CTCTTC 3 cut(s) 207, 489, 969
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 1266
BstDEI CTNAG 5 cut(s) 180, 569, 861, 1323, 1392
BstF5I GGATG 5 cut(s) 151, 428, 641, 659, 1406
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 5 cut(s) 41, 65, 118, 241, 1249
BstMAI GTCTC 6 cut(s) 183, 323, 530, 825, 942, 1080
BstMBI GATC 5 cut(s) 38, 62, 115, 238, 1246
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 126, 570, 689
BstNI CCWGG 4 cut(s) 702, 774, 1036, 1125
BstNSI RCATGY 1 cut(s) 1268
BstSCI CCNGG 4 cut(s) 700, 772, 1034, 1123
BstSFI CTRYAG 2 cut(s) 321, 670
BstSLI GKGCMC 1 cut(s) 716
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 478
Bsu36I CCTNAGG 1 cut(s) 861
BsuRI GGCC 4 cut(s) 136, 296, 311, 1135
BtsCI GGATG 5 cut(s) 151, 428, 641, 659, 1406
BtsIMutI CAGTG 5 cut(s) 602, 743, 1053, 1159, 1428
Cac8I GCNNGC 1 cut(s) 1266
CciI TCATGA 1 cut(s) 379
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 831
CseI GACGC 1 cut(s) 1097
Csp6I GTAC 2 cut(s) 318, 552
CspCI CAANNNNNGTGG 1 cut(s) 1404
CviAII CATG 4 cut(s) 380, 414, 911, 1265
CviQI GTAC 2 cut(s) 318, 552
DdeI CTNAG 5 cut(s) 180, 569, 861, 1323, 1392
DpnI GATC 5 cut(s) 40, 64, 117, 240, 1248
DpnII GATC 5 cut(s) 38, 62, 115, 238, 1246
Eam1104I CTCTTC 3 cut(s) 207, 489, 969
EarI CTCTTC 3 cut(s) 207, 489, 969
EciI GGCGGA 1 cut(s) 1031
Ecl136II GAGCTC 1 cut(s) 283
Eco147I AGGCCT 2 cut(s) 311, 1135
Eco24I GRGCYC 2 cut(s) 285, 399
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 831
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 6 cut(s) 85, 231, 428, 600, 1097, 1326
Eco81I CCTNAGG 1 cut(s) 861
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 831
EcoRII CCWGG 4 cut(s) 700, 772, 1034, 1123
EcoT38I GRGCYC 2 cut(s) 285, 399
Esp3I CGTCTC 1 cut(s) 1080
FaeI CATG 4 cut(s) 383, 417, 914, 1268
FalI AAGNNNNNCTT 2 cut(s) 1161, 1193
FaqI GGGAC 5 cut(s) 125, 274, 817, 1142, 1217
FatI CATG 4 cut(s) 379, 413, 910, 1264
Fnu4HI GCNGC 1 cut(s) 467
FokI GGATG 5 cut(s) 138, 415, 628, 646, 1393
FriOI GRGCYC 2 cut(s) 285, 399
Fsp4HI GCNGC 1 cut(s) 467
FspBI CTAG 2 cut(s) 252, 930
GlaI GCGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 467
GsaI CCCAGC 1 cut(s) 1414
GsuI CTGGAG 2 cut(s) 213, 684
HaeIII GGCC 4 cut(s) 136, 296, 311, 1135
HapII CCGG 3 cut(s) 72, 663, 951
HgaI GACGC 1 cut(s) 1097
HhaI GCGC 1 cut(s) 162
Hin1II CATG 4 cut(s) 383, 417, 914, 1268
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HindIII AAGCTT 2 cut(s) 351, 440
HpaII CCGG 3 cut(s) 72, 663, 951
HphI GGTGA 3 cut(s) 131, 363, 935
HpyAV CCTTC 2 cut(s) 1204, 1288
HpyCH4III ACNGT 3 cut(s) 671, 781, 1275
HpyCH4V TGCA 6 cut(s) 36, 600, 683, 766, 959, 1399
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 570, 689
HpyF3I CTNAG 5 cut(s) 180, 569, 861, 1323, 1392
Hsp92II CATG 4 cut(s) 383, 417, 914, 1268
HspAI GCGC 1 cut(s) 160
Kpn2I TCCGGA 1 cut(s) 950
Kzo9I GATC 5 cut(s) 38, 62, 115, 238, 1246
LmnI GCTCC 3 cut(s) 74, 167, 280
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 3 cut(s) 650, 753, 876
MaeI CTAG 2 cut(s) 252, 930
MaeIII GTNAC 2 cut(s) 665, 1048
MalI GATC 5 cut(s) 40, 64, 117, 240, 1248
MbiI CCGCTC 1 cut(s) 129
MboI GATC 5 cut(s) 38, 62, 115, 238, 1246
MhlI GDGCHC 3 cut(s) 285, 399, 716
MluCI AATT 9 cut(s) 20, 270, 299, 342, 363, 404, 990, 1140, 1222
MlyI GAGTC 4 cut(s) 114, 256, 742, 944
MmeI TCCRAC 2 cut(s) 761, 1269
MroI TCCGGA 1 cut(s) 950
MseI TTAA 4 cut(s) 306, 362, 435, 483
MslI CAYNNNNRTG 1 cut(s) 1164
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 3 cut(s) 72, 663, 951
MspR9I CCNGG 4 cut(s) 702, 774, 1036, 1125
Mva1269I GAATGC 1 cut(s) 1350
MvaI CCWGG 4 cut(s) 702, 774, 1036, 1125
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 126, 570, 689
NdeII GATC 5 cut(s) 38, 62, 115, 238, 1246
NlaIII CATG 4 cut(s) 383, 417, 914, 1268
NlaIV GGNNCC 1 cut(s) 833
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 1048
NspI RCATGY 1 cut(s) 1268
PaeI GCATGC 1 cut(s) 1268
PagI TCATGA 1 cut(s) 379
PceI AGGCCT 2 cut(s) 311, 1135
PctI GAATGC 1 cut(s) 1350
PfeI GAWTC 8 cut(s) 184, 224, 389, 454, 825, 899, 1019, 1215
PflMI CCANNNNNTGG 1 cut(s) 1200
PfoI TCCNGGA 1 cut(s) 700
PkrI GCNGC 1 cut(s) 468
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 4 cut(s) 113, 256, 742, 943
PpsI GAGTC 4 cut(s) 113, 256, 742, 943
PpuMI RGGWCCY 1 cut(s) 831
Psp124BI GAGCTC 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 831
Psp6I CCWGG 4 cut(s) 700, 772, 1034, 1123
PspFI CCCAGC 1 cut(s) 1410
PspGI CCWGG 4 cut(s) 700, 772, 1034, 1123
PspN4I GGNNCC 1 cut(s) 833
PspPI GGNCC 1 cut(s) 831
PspPPI RGGWCCY 1 cut(s) 831
PvuI CGATCG 1 cut(s) 118
RsaI GTAC 2 cut(s) 319, 553
RsaNI GTAC 2 cut(s) 318, 552
RseI CAYNNNNRTG 1 cut(s) 1164
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 4 cut(s) 306, 362, 435, 483
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 5 cut(s) 38, 62, 115, 238, 1246
Sau96I GGNCC 1 cut(s) 831
SchI GAGTC 4 cut(s) 114, 256, 742, 944
ScrFI CCNGG 4 cut(s) 702, 774, 1036, 1125
SduI GDGCHC 3 cut(s) 285, 399, 716
SfaNI GCATC 3 cut(s) 650, 753, 876
SfcI CTRYAG 2 cut(s) 321, 670
SinI GGWCC 1 cut(s) 831
SmiMI CAYNNNNRTG 1 cut(s) 1164
SmlI CTYRAG 3 cut(s) 284, 305, 1059
SmoI CTYRAG 3 cut(s) 284, 305, 1059
SphI GCATGC 1 cut(s) 1268
Sse9I AATT 9 cut(s) 20, 270, 299, 342, 363, 404, 990, 1140, 1222
SseBI AGGCCT 2 cut(s) 311, 1135
SsiI CCGC 2 cut(s) 127, 1016
SspMI CTAG 2 cut(s) 252, 930
SstI GAGCTC 1 cut(s) 285
StuI AGGCCT 2 cut(s) 311, 1135
StyD4I CCNGG 4 cut(s) 700, 772, 1034, 1123
TaaI ACNGT 3 cut(s) 671, 781, 1275
TaqI TCGA 1 cut(s) 823
TasI AATT 9 cut(s) 20, 270, 299, 342, 363, 404, 990, 1140, 1222
TfiI GAWTC 8 cut(s) 184, 224, 389, 454, 825, 899, 1019, 1215
Tru1I TTAA 4 cut(s) 306, 362, 435, 483
Tru9I TTAA 4 cut(s) 306, 362, 435, 483
TscAI CASTG 5 cut(s) 602, 750, 1053, 1166, 1428
TseFI GTSAC 1 cut(s) 1048
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 6 cut(s) 648, 984, 1182, 1306, 1395, 1419
TspRI CASTG 5 cut(s) 602, 750, 1053, 1166, 1428
Van91I CCANNNNNTGG 1 cut(s) 1200
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 831
XapI RAATTY 5 cut(s) 299, 342, 404, 990, 1222
XceI RCATGY 1 cut(s) 1268
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XspI CTAG 2 cut(s) 252, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.