pycom09g02730

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011928
Physical Location & Seq
Reverse (-)
2015374 .. 2016320
947 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02730.1

Sequence Viewer

Length: 726 bp
ATGGCAGCTCCAAGAACCACATTGATGAACCTGCTGGTTATTGTGACCATGCTCATAGAATCGGCCATGGCAGCCACTTACACAGTCGGAGGTCCGAATGGCAGGTGGGATTCAACTACTGATCTTAAAACTTGGGCATCGTCACATTCATTCTTAGTCGGAGATAATCTCAATTTTCAGTACTCACCAAACCATGAAGTGATTGAAGTGCCAAAGGCAGACTATGATTCTTGTCAAGCAAGGAACTCAATTCAGTCTTACAGTGGTGGAAGCACTACCATTCCACTATCTTCTCCCGGCAAAAGGTATTTCATTTGTGGAACAGGTGGACATTGTAGCCAAGGAATGAAGCTTGAAGTCCACACTCTTGCAACTTCTGCCGCACCAGCAGCTTCTCCTATAAGCCCTTCCCCACTAGAATCTCCTTTAGTTCCAACTCCTTCGCCGGCAACTCCTAGTTTGGCTCCGGAACCTTCTATTGCCTCGCCGGCAGAACCTGTACCACAATCTGCTCCCACATTGTCCCCTACTCTGCCATCTGGATTACCCATCAGTCCTGCATCAGACCCTACTGATCACATTCCTTCAACTGAAGCTCCTAGTTCCATTTCTCGAACCGGGTCTTCACCGCAACCTTCTGCTTCATCACCAAACTACATAGGCGGTCTCCCAATCAGTCTCACTGTCGGGTTCAGCGTTTTGATCATGTTGTTGCTAGCCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

242

Amino Acids

24.84

Weight (kDa)

5.37

Isoelectric Point (pI)

74.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 36 - 116 3.7e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32300 AT2G32300
fragaria_vesca FvH4_6g43640 FvH4_6g43640
malus_domestica MD09G1104100.v1.1 MD17G1091800.v1.1
prunus_persica Prupe.3G221600_v2.0.a1
pyrus_communis pycom09g02730
rosa_chinensis RchiOBHm_Chr2g0160261
rosa_laevigata RLG00000021208
rosa_multiflora Rmu_sc0000403.1_g000002 Rmu_sc0008269.1_g000006
rosa_roxburghii Rroxscaffold_2G00089900
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG547900 Rh2BG561500 Rh2CG532200 Rh2DG569900
rosa_wichuraiana Rw2G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 93
Acc36I ACCTGC 2 cut(s) 39, 93
AccIII TCCGGA 1 cut(s) 466
AciI CCGC 3 cut(s) 381, 629, 663
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 2 cut(s) 182, 501
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 4 cut(s) 114, 206, 356, 588
AluBI AGCT 4 cut(s) 8, 352, 392, 596
AluI AGCT 4 cut(s) 8, 352, 392, 596
Alw26I GTCTC 2 cut(s) 671, 683
AlwNI CAGNNNCTG 1 cut(s) 497
Aor13HI TCCGGA 1 cut(s) 466
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 5, 71, 389
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 2 cut(s) 297, 619
AsuHPI GGTGA 3 cut(s) 177, 618, 639
AsuNHI GCTAGC 1 cut(s) 715
AvaII GGWCC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 615
BbvI GCAGC 3 cut(s) 17, 83, 401
BccI CCATC 2 cut(s) 544, 557
BclI TGATCA 2 cut(s) 574, 702
BcnI CCSGG 2 cut(s) 297, 619
BcoDI GTCTC 2 cut(s) 671, 683
BfaI CTAG 5 cut(s) 416, 456, 600, 716, 724
BfuAI ACCTGC 2 cut(s) 39, 93
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 4 cut(s) 6, 72, 381, 390
BlsI GCNGC 4 cut(s) 7, 73, 382, 391
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 2 cut(s) 297, 619
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 465, 471
BmrFI CCNGG 2 cut(s) 297, 619
BmsI GCATC 2 cut(s) 146, 569
BmtI GCTAGC 1 cut(s) 719
BpiI GAAGAC 1 cut(s) 615
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpuMI CCSGG 2 cut(s) 297, 619
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 2 cut(s) 66, 340
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse118I RCCGGY 2 cut(s) 445, 487
BseAI TCCGGA 1 cut(s) 466
BseDI CCNNGG 2 cut(s) 66, 340
BseLI CCNNNNNNNGG 1 cut(s) 303
BseXI GCAGC 3 cut(s) 17, 83, 401
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 5 cut(s) 297, 446, 467, 488, 618
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 671, 683
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 671
Bsp13I TCCGGA 1 cut(s) 466
Bsp143I GATC 3 cut(s) 121, 574, 702
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 3 cut(s) 381, 629, 663
BspANI GGCC 1 cut(s) 65
BspEI TCCGGA 1 cut(s) 466
BspLI GGNNCC 2 cut(s) 465, 471
BspMI ACCTGC 2 cut(s) 39, 93
BspOI GCTAGC 1 cut(s) 719
BspTNI GGTCTC 1 cut(s) 671
BsrFI RCCGGY 2 cut(s) 445, 487
BssAI RCCGGY 2 cut(s) 445, 487
BssECI CCNNGG 2 cut(s) 66, 340
BssMI GATC 3 cut(s) 121, 574, 702
BssT1I CCWWGG 2 cut(s) 66, 340
Bst4CI ACNGT 3 cut(s) 85, 263, 685
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 447, 489, 717
BstDEI CTNAG 1 cut(s) 154
BstDSI CCRYGG 1 cut(s) 66
BstKTI GATC 3 cut(s) 124, 577, 705
BstMAI GTCTC 2 cut(s) 671, 683
BstMBI GATC 3 cut(s) 121, 574, 702
BstMWI GCNNNNNNNGC 5 cut(s) 71, 377, 386, 389, 488
BstSCI CCNGG 2 cut(s) 295, 617
BstV1I GCAGC 3 cut(s) 17, 83, 401
BstV2I GAAGAC 1 cut(s) 615
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 268, 681
BveI ACCTGC 2 cut(s) 39, 93
Cac8I GCNNGC 3 cut(s) 447, 489, 717
CaiI CAGNNNCTG 1 cut(s) 497
Cfr10I RCCGGY 2 cut(s) 445, 487
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 181, 500
CviAII CATG 4 cut(s) 49, 67, 194, 706
CviQI GTAC 2 cut(s) 181, 500
DdeI CTNAG 1 cut(s) 154
DpnI GATC 3 cut(s) 123, 576, 704
DpnII GATC 3 cut(s) 121, 574, 702
EaeI YGGCCR 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 66, 340
Eco31I GGTCTC 1 cut(s) 671
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 612
EcoT14I CCWWGG 2 cut(s) 66, 340
ErhI CCWWGG 2 cut(s) 66, 340
FaeI CATG 4 cut(s) 52, 70, 197, 709
FaiI YATR 8 cut(s) 50, 56, 68, 195, 225, 401, 659, 707
FaqI GGGAC 1 cut(s) 508
FatI CATG 4 cut(s) 48, 66, 193, 705
FbaI TGATCA 2 cut(s) 574, 702
Fnu4HI GCNGC 4 cut(s) 6, 72, 381, 390
Fsp4HI GCNGC 4 cut(s) 6, 72, 381, 390
FspBI CTAG 5 cut(s) 416, 456, 600, 716, 724
GluI GCNGC 4 cut(s) 6, 72, 381, 390
HaeIII GGCC 1 cut(s) 65
HapII CCGG 5 cut(s) 297, 446, 467, 488, 618
Hin1II CATG 4 cut(s) 52, 70, 197, 709
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 4 cut(s) 59, 110, 227, 419
HpaII CCGG 5 cut(s) 297, 446, 467, 488, 618
HphI GGTGA 3 cut(s) 177, 618, 639
Hpy166II GTNNAC 2 cut(s) 329, 361
Hpy188I TCNGA 4 cut(s) 89, 96, 161, 565
Hpy188III TCNNGA 3 cut(s) 467, 540, 612
Hpy8I GTNNAC 2 cut(s) 329, 361
HpyAV CCTTC 5 cut(s) 417, 450, 483, 594, 645
HpyCH4III ACNGT 3 cut(s) 85, 263, 685
HpyCH4V TGCA 2 cut(s) 371, 560
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 377, 386, 389, 488
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 4 cut(s) 52, 70, 197, 709
Kpn2I TCCGGA 1 cut(s) 466
KroI GCCGGC 2 cut(s) 445, 487
KroNI GCCGGC 2 cut(s) 447, 489
Ksp22I TGATCA 2 cut(s) 574, 702
Kzo9I GATC 3 cut(s) 121, 574, 702
LmnI GCTCC 4 cut(s) 13, 469, 517, 601
Lsp1109I GCAGC 3 cut(s) 17, 83, 401
LweI GCATC 2 cut(s) 146, 569
MaeI CTAG 5 cut(s) 416, 456, 600, 716, 724
MaeIII GTNAC 2 cut(s) 43, 141
MalI GATC 3 cut(s) 123, 576, 704
MboI GATC 3 cut(s) 121, 574, 702
MboII GAAGA 2 cut(s) 282, 615
MluCI AATT 2 cut(s) 172, 249
MmeI TCCRAC 3 cut(s) 67, 139, 458
MnlI CCTC 2 cut(s) 83, 493
MroI TCCGGA 1 cut(s) 466
MroNI GCCGGC 2 cut(s) 445, 487
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 5 cut(s) 297, 446, 467, 488, 618
MspR9I CCNGG 2 cut(s) 297, 619
MwoI GCNNNNNNNGC 5 cut(s) 71, 377, 386, 389, 488
NaeI GCCGGC 2 cut(s) 447, 489
NciI CCSGG 2 cut(s) 297, 619
NcoI CCATGG 1 cut(s) 66
NdeII GATC 3 cut(s) 121, 574, 702
NgoMIV GCCGGC 2 cut(s) 445, 487
NheI GCTAGC 1 cut(s) 715
NlaIII CATG 4 cut(s) 52, 70, 197, 709
NlaIV GGNNCC 2 cut(s) 465, 471
NmuCI GTSAC 2 cut(s) 43, 141
PaqCI CACCTGC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 693
PdiI GCCGGC 2 cut(s) 447, 489
PfeI GAWTC 4 cut(s) 59, 110, 227, 419
PkrI GCNGC 4 cut(s) 7, 73, 382, 391
PspN4I GGNNCC 2 cut(s) 465, 471
PspPI GGNCC 1 cut(s) 92
PstNI CAGNNNCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 182, 501
RsaNI GTAC 2 cut(s) 181, 500
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 4 cut(s) 6, 72, 381, 390
Sau3AI GATC 3 cut(s) 121, 574, 702
Sau96I GGNCC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 297, 619
SfaNI GCATC 2 cut(s) 146, 569
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 2 cut(s) 172, 249
SsiI CCGC 3 cut(s) 381, 629, 663
SspMI CTAG 5 cut(s) 416, 456, 600, 716, 724
StyD4I CCNGG 2 cut(s) 295, 617
StyI CCWWGG 2 cut(s) 66, 340
TaaI ACNGT 3 cut(s) 85, 263, 685
TaqI TCGA 1 cut(s) 613
TasI AATT 2 cut(s) 172, 249
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 4 cut(s) 59, 110, 227, 419
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 268, 688
TseFI GTSAC 2 cut(s) 43, 141
TseI GCWGC 3 cut(s) 5, 71, 389
Tsp45I GTSAC 2 cut(s) 43, 141
TspDTI ATGAA 6 cut(s) 41, 138, 210, 301, 362, 633
TspRI CASTG 2 cut(s) 268, 688
VpaK11BI GGWCC 1 cut(s) 92
XspI CTAG 5 cut(s) 416, 456, 600, 716, 724
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.