Rh2AG547900

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011928
Physical Location & Seq
Forward (+)
77758783 .. 77760353
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG547900.1

Sequence Viewer

Length: 714 bp
ATGGAGAAAAACATGGCTGTACTTACAAGGACATTGATGAGCTTTGCTATCATGACCGTGCTCGTTGAATTGGCCACGGCAGCGACTTACACGGTTGGTGGTCCAAACGCCGGGTGGGATGCAACTACCGACCTGCAAACATGGGCGTCATCCCAGACATTCTTACTCGGAGATAATCTAAATTTTCAGTACTCGCCTAGCCACAATGTGCTTGAGGTTTCAAAGGCAGACTATGATTCTTGCCAAGGAAGCAACTCAATTCAGGCATACAGTGGTGGCAGCACTACAATCCCTCTCTCTTCTGCAGGAAAGAGATACTTCATTTGTGGAACAAATGGGCATTGTAGCCAGGGAATGAAGCTTGAAGTTGACACTAGTCTTGCAACTAATTCTGCTCCTCCACCTACAGCTTCTCCAGCTGTAGACCTCGCTCCACAAGAATCTCCTTCAACTACTCTACCTCCTTCCTCGGACAGTCCTTTGGCCTCCTCTCTTTCTCCAGGCACTTCTGCTGCCTCACCCTCACCTGCACAATCACCAGAACTTGCCTTCAGTCCTACACCAACTGCTATTGACATACCTTCAACTGAATCTCCCACTTCCATCTCTCGAACCGGGTCCTCCCCAGAACCATCAGCTGCTTCATCTCTTAACAACATACTCGGTCTCACTCTGGGATTTGGTATCATGATGATGTTGTTTCTCGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

237

Amino Acids

24.4

Weight (kDa)

4.3

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 119 1.5e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32300 AT2G32300
fragaria_vesca FvH4_6g43640 FvH4_6g43640
malus_domestica MD09G1104100.v1.1 MD17G1091800.v1.1
prunus_persica Prupe.3G221600_v2.0.a1
pyrus_communis pycom09g02730
rosa_chinensis RchiOBHm_Chr2g0160261
rosa_laevigata RLG00000021208
rosa_multiflora Rmu_sc0000403.1_g000002 Rmu_sc0008269.1_g000006
rosa_roxburghii Rroxscaffold_2G00089900
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG547900 Rh2BG561500 Rh2CG532200 Rh2DG569900
rosa_wichuraiana Rw2G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 535
Acc36I ACCTGC 2 cut(s) 141, 535
AccI GTMKAC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 535
AcyI GRCGYC 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 208
AfaI GTAC 2 cut(s) 21, 191
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 5 cut(s) 68, 222, 365, 450, 585
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 2 cut(s) 348, 499
AluBI AGCT 5 cut(s) 42, 361, 410, 419, 638
AluI AGCT 5 cut(s) 42, 361, 410, 419, 638
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 671
AoxI GGCC 2 cut(s) 72, 483
ApeKI GCWGC 4 cut(s) 80, 279, 512, 638
ApoI RAATTY 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 101, 618
AsuC2I CCSGG 2 cut(s) 112, 616
AsuHPI GGTGA 3 cut(s) 510, 516, 528
AvaII GGWCC 2 cut(s) 101, 618
BalI TGGCCA 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 4 cut(s) 92, 291, 499, 625
BccI CCATC 2 cut(s) 611, 640
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 350, 501
BcnI CCSGG 2 cut(s) 112, 616
BcoDI GTCTC 1 cut(s) 671
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 2 cut(s) 198, 375
BfmI CTRYAG 3 cut(s) 303, 405, 420
BfuAI ACCTGC 2 cut(s) 141, 535
BisI GCNGC 4 cut(s) 81, 280, 513, 639
BlsI GCNGC 4 cut(s) 82, 281, 514, 640
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 4 cut(s) 112, 350, 501, 616
Bme18I GGWCC 2 cut(s) 101, 618
BmgT120I GGNCC 2 cut(s) 101, 618
BmiI GGNNCC 1 cut(s) 619
BmrFI CCNGG 4 cut(s) 112, 350, 501, 616
BmsI GCATC 1 cut(s) 109
BoxI GACNNNNGTC 1 cut(s) 375
BpmI CTGGAG 2 cut(s) 399, 483
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 2 cut(s) 112, 616
BsaHI GRCGYC 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 4 cut(s) 75, 244, 349, 468
BsaXI ACNNNNNCTCC 6 cut(s) 397, 427, 445, 475, 577, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseBI CCWGG 2 cut(s) 350, 501
BseDI CCNNGG 4 cut(s) 75, 244, 349, 468
BseGI GGATG 2 cut(s) 124, 149
BseLI CCNNNNNNNGG 1 cut(s) 110
BseRI GAGGAG 2 cut(s) 387, 478
BseXI GCAGC 4 cut(s) 92, 291, 499, 625
BsgI GTGCAG 1 cut(s) 513
BshFI GGCC 2 cut(s) 74, 485
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 2 cut(s) 111, 615
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 671
BsnI GGCC 2 cut(s) 74, 485
Bso31I GGTCTC 1 cut(s) 671
Bsp1286I GDGCHC 1 cut(s) 63
BspANI GGCC 2 cut(s) 74, 485
BspHI TCATGA 2 cut(s) 51, 687
BspLI GGNNCC 1 cut(s) 619
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 2 cut(s) 141, 535
BspTNI GGTCTC 1 cut(s) 671
BssECI CCNNGG 4 cut(s) 75, 244, 349, 468
BssNI GRCGYC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 2 cut(s) 350, 501
Bst4CI ACNGT 4 cut(s) 58, 94, 272, 476
Bst6I CTCTTC 1 cut(s) 304
BstACI GRCGYC 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 124, 149
BstMAI GTCTC 1 cut(s) 671
BstMWI GCNNNNNNNGC 3 cut(s) 80, 249, 416
BstNI CCWGG 2 cut(s) 350, 501
BstPAI GACNNNNGTC 1 cut(s) 375
BstSCI CCNGG 4 cut(s) 110, 348, 499, 614
BstSFI CTRYAG 3 cut(s) 303, 405, 420
BstV1I GCAGC 4 cut(s) 92, 291, 499, 625
BsuRI GGCC 2 cut(s) 74, 485
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 124, 149
BtsIMutI CAGTG 1 cut(s) 277
BveI ACCTGC 2 cut(s) 141, 535
CciI TCATGA 2 cut(s) 51, 687
Cfr13I GGNCC 2 cut(s) 101, 618
CseI GACGC 1 cut(s) 135
Csp6I GTAC 2 cut(s) 20, 190
CviAII CATG 4 cut(s) 13, 52, 141, 688
CviQI GTAC 2 cut(s) 20, 190
DraIII CACNNNGTG 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 671
Eco47I GGWCC 2 cut(s) 101, 618
Eco57I CTGAAG 1 cut(s) 535
EcoO109I RGGNCCY 1 cut(s) 618
EcoRII CCWGG 2 cut(s) 348, 499
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 16, 55, 144, 691
FaiI YATR 8 cut(s) 14, 53, 142, 234, 268, 578, 659, 689
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FatI CATG 4 cut(s) 12, 51, 140, 687
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 4 cut(s) 81, 280, 513, 639
FokI GGATG 2 cut(s) 131, 136
Fsp4HI GCNGC 4 cut(s) 81, 280, 513, 639
FspBI CTAG 2 cut(s) 198, 375
GluI GCNGC 4 cut(s) 81, 280, 513, 639
GsuI CTGGAG 2 cut(s) 399, 483
HaeIII GGCC 2 cut(s) 74, 485
HapII CCGG 2 cut(s) 111, 615
HgaI GACGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 4 cut(s) 16, 55, 144, 691
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 3 cut(s) 236, 440, 590
HpaII CCGG 2 cut(s) 111, 615
HphI GGTGA 3 cut(s) 510, 516, 528
Hpy166II GTNNAC 2 cut(s) 370, 424
Hpy188I TCNGA 2 cut(s) 170, 472
Hpy188III TCNNGA 3 cut(s) 52, 609, 688
Hpy8I GTNNAC 2 cut(s) 370, 424
HpyAV CCTTC 4 cut(s) 456, 474, 559, 591
HpyCH4III ACNGT 4 cut(s) 58, 94, 272, 476
HpyCH4V TGCA 5 cut(s) 122, 136, 305, 383, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 249, 416
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 4 cut(s) 16, 55, 144, 691
LmnI GCTCC 2 cut(s) 400, 436
Lsp1109I GCAGC 4 cut(s) 92, 291, 499, 625
LweI GCATC 1 cut(s) 109
MaeI CTAG 2 cut(s) 198, 375
MboII GAAGA 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 4 cut(s) 68, 181, 258, 388
MluNI TGGCCA 1 cut(s) 74
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
MseI TTAA 1 cut(s) 651
MslI CAYNNNNRTG 2 cut(s) 56, 692
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 2 cut(s) 419, 638
MspI CCGG 2 cut(s) 111, 615
MspR9I CCNGG 4 cut(s) 112, 350, 501, 616
MvaI CCWGG 2 cut(s) 350, 501
MwoI GCNNNNNNNGC 3 cut(s) 80, 249, 416
NciI CCSGG 2 cut(s) 112, 616
NlaIII CATG 4 cut(s) 16, 55, 144, 691
NlaIV GGNNCC 1 cut(s) 619
PagI TCATGA 2 cut(s) 51, 687
PaqCI CACCTGC 1 cut(s) 535
PfeI GAWTC 3 cut(s) 236, 440, 590
PkrI GCNGC 4 cut(s) 82, 281, 514, 640
PpuMI RGGWCCY 1 cut(s) 618
PshAI GACNNNNGTC 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 618
Psp6I CCWGG 2 cut(s) 348, 499
PspGI CCWGG 2 cut(s) 348, 499
PspN4I GGNNCC 1 cut(s) 619
PspPI GGNCC 2 cut(s) 101, 618
PspPPI RGGWCCY 1 cut(s) 618
PstI CTGCAG 1 cut(s) 307
PvuII CAGCTG 2 cut(s) 419, 638
RsaI GTAC 2 cut(s) 21, 191
RsaNI GTAC 2 cut(s) 20, 190
RseI CAYNNNNRTG 2 cut(s) 56, 692
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 4 cut(s) 81, 280, 513, 639
Sau96I GGNCC 2 cut(s) 101, 618
ScaI AGTACT 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 112, 350, 501, 616
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 3 cut(s) 303, 405, 420
SinI GGWCC 2 cut(s) 101, 618
SmiMI CAYNNNNRTG 2 cut(s) 56, 692
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 4 cut(s) 68, 181, 258, 388
SspMI CTAG 2 cut(s) 198, 375
StyD4I CCNGG 4 cut(s) 110, 348, 499, 614
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 4 cut(s) 58, 94, 272, 476
TaqI TCGA 1 cut(s) 610
TaqII GACCGA 1 cut(s) 653
TasI AATT 4 cut(s) 68, 181, 258, 388
TatI WGTACW 2 cut(s) 19, 189
TfiI GAWTC 3 cut(s) 236, 440, 590
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 1 cut(s) 277
TseI GCWGC 4 cut(s) 80, 279, 512, 638
TspDTI ATGAA 3 cut(s) 310, 371, 633
TspRI CASTG 1 cut(s) 277
VpaK11BI GGWCC 2 cut(s) 101, 618
XapI RAATTY 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 2 cut(s) 198, 375
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.