Prupe.3G221600_v2.0.a1

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011928
Physical Location & Seq
Forward (+)
22238120 .. 22239410
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G221600.1

Sequence Viewer

Length: 723 bp
ATGGCAGCTTCAAGAACAACATTAGTGAGCTTGGTTGTTGTGACCATGCTCATAGAATTGGCCATGGCAGCCAGTTACAATGTAGGAGGTCCGAATGGCGGGTGGGATTCGACTACCGACCTTCAAACTTGGGCATCATCCCAGACATTCTTAGTAGGAGATAATCTCAATTTTCAGTACGCACCAAGCCATGATGTGGTTGAAGTTCCAAAGGCAGACTATGATTCTTGCCAAGCAAGTAACTCAATTCAGTCTTACAGTGGTGGCAGCACTACCATTCCTCTGTCTTCTCCAGGCAAGAGGTACTTCATCTGTGGAACAACTGGACATTGTAGCCAAGGAATGAAGCTAGAAGTGGACACTCTTGCACCTTCTACTGCACCAACTGCTTCTCCTCTGAGCCCTGCTCCACAAGAATCTCCTTCAATCCCAGCCCCTTCTTCCGTGGACACTCCATTGGCTCCAGAAGCTTCGAGTGCCTCACCGGTACAATCACCAGAATCTGCTCCCACTTTGTCCCCTGCTTTGCCATCTGAGTTGCCCATCAGTCCTGCATCAAACCCAACCGACATTCCTTCAACTGAAGCTCCTACTTCCATCTCTCGAACCGGATCTTCAGCACAACCATCTTCCTCATCACTTAACTGCAAATTAGGCAGCCTCCAGGCAAGTCTCACTGTGGGGTTCAGTGCTGTTGTGATCATGTTGTTTCTATCCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

241

Amino Acids

24.47

Weight (kDa)

4.3

Isoelectric Point (pI)

69.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32300 AT2G32300
fragaria_vesca FvH4_6g43640 FvH4_6g43640
malus_domestica MD09G1104100.v1.1 MD17G1091800.v1.1
prunus_persica Prupe.3G221600_v2.0.a1
pyrus_communis pycom09g02730
rosa_chinensis RchiOBHm_Chr2g0160261
rosa_laevigata RLG00000021208
rosa_multiflora Rmu_sc0000403.1_g000002 Rmu_sc0008269.1_g000006
rosa_roxburghii Rroxscaffold_2G00089900
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG547900 Rh2BG561500 Rh2CG532200 Rh2DG569900
rosa_wichuraiana Rw2G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 196
AciI CCGC 1 cut(s) 99
AclWI GGATC 1 cut(s) 619
AcoI YGGCCR 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 600, 603
AfaI GTAC 3 cut(s) 179, 305, 489
AfiI CCNNNNNNNGG 2 cut(s) 98, 196
AgeI ACCGGT 1 cut(s) 484
AgsI TTSAA 5 cut(s) 12, 125, 203, 426, 579
AjnI CCWGG 2 cut(s) 292, 663
AluBI AGCT 5 cut(s) 8, 30, 349, 470, 587
AluI AGCT 5 cut(s) 8, 30, 349, 470, 587
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 1 cut(s) 619
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 4 cut(s) 5, 68, 267, 657
AsiGI ACCGGT 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 474, 486
AvaII GGWCC 1 cut(s) 89
BalI TGGCCA 1 cut(s) 62
BanII GRGCYC 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 4 cut(s) 17, 80, 279, 669
BccI CCATC 4 cut(s) 538, 551, 605, 634
BciT130I CCWGG 2 cut(s) 294, 665
BclI TGATCA 1 cut(s) 699
BcoDI GTCTC 1 cut(s) 677
BfaI CTAG 2 cut(s) 350, 721
BisI GCNGC 4 cut(s) 6, 69, 268, 658
BlsI GCNGC 4 cut(s) 7, 70, 269, 659
Bme1390I CCNGG 2 cut(s) 294, 665
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 2 cut(s) 294, 665
BmsI GCATC 2 cut(s) 143, 563
BpiI GAAGAC 1 cut(s) 279
BplI GAGNNNNNCTC 4 cut(s) 150, 182, 391, 423
BpmI CTGGAG 3 cut(s) 276, 447, 647
BsaJI CCNNGG 3 cut(s) 63, 337, 444
BsaWI WCCGGW 2 cut(s) 484, 608
BsaXI ACNNNNNCTCC 4 cut(s) 376, 406, 571, 601
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 196
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 72, 328
BseBI CCWGG 2 cut(s) 294, 665
BseDI CCNNGG 3 cut(s) 63, 337, 444
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 98, 196
BseMII CTCAG 2 cut(s) 389, 525
BseNI ACTGG 2 cut(s) 72, 328
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 4 cut(s) 17, 80, 279, 669
BseYI CCCAGC 1 cut(s) 430
BsgI GTGCAG 1 cut(s) 363
BshFI GGCC 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 484
BsiSI CCGG 2 cut(s) 485, 609
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 2 cut(s) 98, 196
BsmAI GTCTC 1 cut(s) 677
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 2 cut(s) 611, 699
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 390, 526
BspLI GGNNCC 1 cut(s) 462
BspPI GGATC 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 2 cut(s) 72, 328
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 3 cut(s) 63, 337, 444
BssMI GATC 2 cut(s) 611, 699
BssT1I CCWWGG 2 cut(s) 63, 337
Bst2UI CCWGG 2 cut(s) 294, 665
Bst4CI ACNGT 2 cut(s) 260, 679
BstAPI GCANNNNNTGC 1 cut(s) 386
BstDEI CTNAG 3 cut(s) 151, 398, 534
BstDSI CCRYGG 2 cut(s) 63, 444
BstF5I GGATG 1 cut(s) 137
BstKTI GATC 2 cut(s) 614, 702
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 2 cut(s) 611, 699
BstMWI GCNNNNNNNGC 5 cut(s) 68, 386, 467, 476, 654
BstNI CCWGG 2 cut(s) 294, 665
BstSCI CCNGG 2 cut(s) 292, 663
BstV1I GCAGC 4 cut(s) 17, 80, 279, 669
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 611
BstYI RGATCY 1 cut(s) 611
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 2 cut(s) 63, 444
BtsCI GGATG 1 cut(s) 137
BtsIMutI CAGTG 3 cut(s) 265, 675, 694
CaiI CAGNNNCTG 1 cut(s) 503
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 178, 304, 488
CspAI ACCGGT 1 cut(s) 484
CviAII CATG 4 cut(s) 46, 64, 191, 703
CviQI GTAC 3 cut(s) 178, 304, 488
DdeI CTNAG 3 cut(s) 151, 398, 534
DpnI GATC 2 cut(s) 613, 701
DpnII GATC 2 cut(s) 611, 699
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 63, 337
Eco24I GRGCYC 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 600, 603
EcoRII CCWGG 2 cut(s) 292, 663
EcoT14I CCWWGG 2 cut(s) 63, 337
EcoT38I GRGCYC 1 cut(s) 404
ErhI CCWWGG 2 cut(s) 63, 337
FaeI CATG 4 cut(s) 49, 67, 194, 706
FaiI YATR 6 cut(s) 47, 53, 65, 192, 222, 704
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 1 cut(s) 502
FatI CATG 4 cut(s) 45, 63, 190, 702
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 699
Fnu4HI GCNGC 4 cut(s) 6, 69, 268, 658
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 4 cut(s) 6, 69, 268, 658
FspBI CTAG 2 cut(s) 350, 721
GluI GCNGC 4 cut(s) 6, 69, 268, 658
GsaI CCCAGC 1 cut(s) 434
GsuI CTGGAG 3 cut(s) 276, 447, 647
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 485, 609
Hin1II CATG 4 cut(s) 49, 67, 194, 706
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 4 cut(s) 107, 224, 416, 500
HpaII CCGG 2 cut(s) 485, 609
HphI GGTGA 2 cut(s) 474, 486
Hpy166II GTNNAC 2 cut(s) 358, 448
Hpy188I TCNGA 3 cut(s) 93, 399, 535
Hpy188III TCNNGA 3 cut(s) 12, 464, 603
Hpy8I GTNNAC 2 cut(s) 358, 448
HpyAV CCTTC 5 cut(s) 131, 381, 432, 447, 585
HpyCH4III ACNGT 2 cut(s) 260, 679
HpyCH4V TGCA 4 cut(s) 368, 380, 554, 648
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 386, 467, 476, 654
HpyF3I CTNAG 3 cut(s) 151, 398, 534
Hsp92II CATG 4 cut(s) 49, 67, 194, 706
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 2 cut(s) 611, 699
LmnI GCTCC 4 cut(s) 412, 466, 511, 592
Lsp1109I GCAGC 4 cut(s) 17, 80, 279, 669
LweI GCATC 2 cut(s) 143, 563
MaeI CTAG 2 cut(s) 350, 721
MaeIII GTNAC 3 cut(s) 40, 74, 239
MalI GATC 2 cut(s) 613, 701
MboI GATC 2 cut(s) 611, 699
MboII GAAGA 4 cut(s) 279, 432, 606, 621
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 1 cut(s) 404
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 4 cut(s) 56, 169, 246, 650
MluNI TGGCCA 1 cut(s) 62
MnlI CCTC 7 cut(s) 80, 291, 294, 405, 490, 643, 671
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 642
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 2 cut(s) 485, 609
MspR9I CCNGG 2 cut(s) 294, 665
MvaI CCWGG 2 cut(s) 294, 665
MwoI GCNNNNNNNGC 5 cut(s) 68, 386, 467, 476, 654
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 611, 699
NlaIII CATG 4 cut(s) 49, 67, 194, 706
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 1 cut(s) 40
PfeI GAWTC 4 cut(s) 107, 224, 416, 500
PflMI CCANNNNNTGG 1 cut(s) 196
PinAI ACCGGT 1 cut(s) 484
PkrI GCNGC 4 cut(s) 7, 70, 269, 659
Psp6I CCWGG 2 cut(s) 292, 663
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 2 cut(s) 292, 663
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 1 cut(s) 611
RsaI GTAC 3 cut(s) 179, 305, 489
RsaNI GTAC 3 cut(s) 178, 304, 488
SaqAI TTAA 1 cut(s) 642
SatI GCNGC 4 cut(s) 6, 69, 268, 658
Sau3AI GATC 2 cut(s) 611, 699
Sau96I GGNCC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 294, 665
SduI GDGCHC 1 cut(s) 404
SetI ASST 9 cut(s) 10, 32, 91, 123, 305, 351, 373, 472, 589
SfaNI GCATC 2 cut(s) 143, 563
SinI GGWCC 1 cut(s) 89
Sse9I AATT 4 cut(s) 56, 169, 246, 650
SsiI CCGC 1 cut(s) 99
SspMI CTAG 2 cut(s) 350, 721
StyD4I CCNGG 2 cut(s) 292, 663
StyI CCWWGG 2 cut(s) 63, 337
TaaI ACNGT 2 cut(s) 260, 679
TaqI TCGA 3 cut(s) 110, 473, 604
TasI AATT 4 cut(s) 56, 169, 246, 650
TfiI GAWTC 4 cut(s) 107, 224, 416, 500
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 3 cut(s) 265, 682, 694
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 4 cut(s) 5, 68, 267, 657
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 298, 359
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 3 cut(s) 265, 682, 694
Van91I CCANNNNNTGG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 89
XspI CTAG 2 cut(s) 350, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.