MD09G1104100.v1.1

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0011928
Physical Location & Seq
Reverse (-)
7600799 .. 7601948
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1104100.v1.1.491

Sequence Viewer

Length: 723 bp
ATGGCAGCTCCAAGAACCACATTGATGAACCTGGTTATTGTGACCATGCTCATAGAATCGGCCATGGCAACCACTTACACAGTCGGAGGTCCGAATGGCAGGTGGGATTCAACTACTGATCTTAAAACTTGGGCATCGTCACAGTCATTCTTAGTCGGAGATAATCTCAATTTTCAGTACTCAACAAAGCATGATGTGATTGAAGTGCCAAAGGCAGACTATGATTCTTGTCAAGCAAGGAACTCAATTCAGTCTTACAGTGGTGGAAGCACTACCATTACTCTATCTTCTCCAGGCAAAAGGTATTTCATCTGTGGAACAACTGGACATTGTAGCCAAGGAATGAAGCTTGAAGTCAACACTCTTGCAACTTCTGCCGCACCAGCAGCTTCTCCTATAAGCCCTTCCCCACTAGAATCTCCTTTAGTTCCAACTCCTTCGCCGGCTACTCCTAGTTTGGCTCCGGAACCTTCTATTGCCTCGCCGGCAGAACCGGTACCACAATCTGCTCCCACATTGTCCCCTACTCTGCCATCTGGATTGCCCATCAGTCCTGCATCAGACCCTACCGATCACATTCCTTCAACTGAAGCTCCTAGTTCCATTTCTCGAACCGGGTCTTCACCGCAACCTTCTGCTTCATCACCAAACTACAAAGGCGGTCTCCCAATCAGTCTCACCGTCGCTTTCAGCGTTTTGATCATGTTGTTGCTAGCCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

241

Amino Acids

24.81

Weight (kDa)

5.45

Isoelectric Point (pI)

75.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 115 6e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32300 AT2G32300
fragaria_vesca FvH4_6g43640 FvH4_6g43640
malus_domestica MD09G1104100.v1.1 MD17G1091800.v1.1
prunus_persica Prupe.3G221600_v2.0.a1
pyrus_communis pycom09g02730
rosa_chinensis RchiOBHm_Chr2g0160261
rosa_laevigata RLG00000021208
rosa_multiflora Rmu_sc0000403.1_g000002 Rmu_sc0008269.1_g000006
rosa_roxburghii Rroxscaffold_2G00089900
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG547900 Rh2BG561500 Rh2CG532200 Rh2DG569900
rosa_wichuraiana Rw2G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 90
Acc65I GGTACC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 496
AccIII TCCGGA 1 cut(s) 463
AciI CCGC 3 cut(s) 378, 626, 660
AcoI YGGCCR 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 2 cut(s) 179, 498
AgeI ACCGGT 1 cut(s) 493
AgsI TTSAA 4 cut(s) 111, 203, 353, 585
AjnI CCWGG 2 cut(s) 30, 292
AluBI AGCT 4 cut(s) 8, 349, 389, 593
AluI AGCT 4 cut(s) 8, 349, 389, 593
Alw26I GTCTC 2 cut(s) 668, 680
Aor13HI TCCGGA 1 cut(s) 463
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 5, 386
AsiGI ACCGGT 1 cut(s) 493
Asp718I GGTACC 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 616
AsuHPI GGTGA 3 cut(s) 615, 636, 670
AsuNHI GCTAGC 1 cut(s) 712
AvaII GGWCC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 496
BbsI GAAGAC 1 cut(s) 612
BbvI GCAGC 2 cut(s) 17, 398
BccI CCATC 2 cut(s) 541, 554
BciT130I CCWGG 2 cut(s) 32, 294
BclI TGATCA 1 cut(s) 699
BcnI CCSGG 1 cut(s) 616
BcoDI GTCTC 2 cut(s) 668, 680
BfaI CTAG 5 cut(s) 413, 453, 597, 713, 721
BfuAI ACCTGC 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 485
BisI GCNGC 3 cut(s) 6, 378, 387
BlsI GCNGC 3 cut(s) 7, 379, 388
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 3 cut(s) 32, 294, 616
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 3 cut(s) 462, 468, 498
BmrFI CCNGG 3 cut(s) 32, 294, 616
BmsI GCATC 2 cut(s) 143, 566
BmtI GCTAGC 1 cut(s) 716
BpiI GAAGAC 1 cut(s) 612
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpmI CTGGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 616
BsaI GGTCTC 1 cut(s) 668
BsaJI CCNNGG 2 cut(s) 63, 337
BsaWI WCCGGW 2 cut(s) 463, 493
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bse118I RCCGGY 3 cut(s) 442, 484, 493
Bse1I ACTGG 1 cut(s) 328
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 2 cut(s) 32, 294
BseDI CCNNGG 2 cut(s) 63, 337
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 2 cut(s) 17, 398
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 496
BshTI ACCGGT 1 cut(s) 493
BsiSI CCGG 5 cut(s) 443, 464, 485, 494, 615
BslFI GGGAC 1 cut(s) 505
BsmAI GTCTC 2 cut(s) 668, 680
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 668
Bsp13I TCCGGA 1 cut(s) 463
Bsp143I GATC 3 cut(s) 118, 571, 699
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 3 cut(s) 378, 626, 660
BspANI GGCC 1 cut(s) 62
BspEI TCCGGA 1 cut(s) 463
BspLI GGNNCC 3 cut(s) 462, 468, 498
BspMI ACCTGC 1 cut(s) 90
BspOI GCTAGC 1 cut(s) 716
BspT107I GGYRCC 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 668
BsrFI RCCGGY 3 cut(s) 442, 484, 493
BsrI ACTGG 1 cut(s) 328
BssAI RCCGGY 3 cut(s) 442, 484, 493
BssECI CCNNGG 2 cut(s) 63, 337
BssMI GATC 3 cut(s) 118, 571, 699
BssT1I CCWWGG 2 cut(s) 63, 337
Bst2UI CCWGG 2 cut(s) 32, 294
Bst4CI ACNGT 4 cut(s) 82, 144, 260, 682
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 444, 486, 714
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 63
BstKTI GATC 3 cut(s) 121, 574, 702
BstMAI GTCTC 2 cut(s) 668, 680
BstMBI GATC 3 cut(s) 118, 571, 699
BstMWI GCNNNNNNNGC 4 cut(s) 374, 383, 386, 485
BstNI CCWGG 2 cut(s) 32, 294
BstSCI CCNGG 3 cut(s) 30, 292, 614
BstV1I GCAGC 2 cut(s) 17, 398
BstV2I GAAGAC 1 cut(s) 612
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 265
BveI ACCTGC 1 cut(s) 90
Cac8I GCNNGC 3 cut(s) 444, 486, 714
Cfr10I RCCGGY 3 cut(s) 442, 484, 493
Cfr13I GGNCC 1 cut(s) 89
CsiI ACCWGGT 1 cut(s) 30
Csp6I GTAC 2 cut(s) 178, 497
CspAI ACCGGT 1 cut(s) 493
CviAII CATG 4 cut(s) 46, 64, 191, 703
CviQI GTAC 2 cut(s) 178, 497
DdeI CTNAG 1 cut(s) 151
DpnI GATC 3 cut(s) 120, 573, 701
DpnII GATC 3 cut(s) 118, 571, 699
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 63, 337
Eco31I GGTCTC 1 cut(s) 668
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 609
EcoRII CCWGG 2 cut(s) 30, 292
EcoT14I CCWWGG 2 cut(s) 63, 337
ErhI CCWWGG 2 cut(s) 63, 337
FaeI CATG 4 cut(s) 49, 67, 194, 706
FaiI YATR 7 cut(s) 47, 53, 65, 192, 222, 398, 704
FaqI GGGAC 1 cut(s) 505
FatI CATG 4 cut(s) 45, 63, 190, 702
FbaI TGATCA 1 cut(s) 699
Fnu4HI GCNGC 3 cut(s) 6, 378, 387
Fsp4HI GCNGC 3 cut(s) 6, 378, 387
FspBI CTAG 5 cut(s) 413, 453, 597, 713, 721
GluI GCNGC 3 cut(s) 6, 378, 387
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 62
HapII CCGG 5 cut(s) 443, 464, 485, 494, 615
Hin1II CATG 4 cut(s) 49, 67, 194, 706
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 4 cut(s) 56, 107, 224, 416
HpaII CCGG 5 cut(s) 443, 464, 485, 494, 615
HphI GGTGA 3 cut(s) 615, 636, 670
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 4 cut(s) 86, 93, 158, 562
Hpy188III TCNNGA 3 cut(s) 464, 537, 609
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 686
HpyAV CCTTC 5 cut(s) 414, 447, 480, 591, 642
HpyCH4III ACNGT 4 cut(s) 82, 144, 260, 682
HpyCH4V TGCA 2 cut(s) 368, 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 383, 386, 485
HpyF3I CTNAG 1 cut(s) 151
Hsp92II CATG 4 cut(s) 49, 67, 194, 706
Kpn2I TCCGGA 1 cut(s) 463
KpnI GGTACC 1 cut(s) 500
KroI GCCGGC 2 cut(s) 442, 484
KroNI GCCGGC 2 cut(s) 444, 486
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 3 cut(s) 118, 571, 699
LmnI GCTCC 4 cut(s) 13, 466, 514, 598
Lsp1109I GCAGC 2 cut(s) 17, 398
LweI GCATC 2 cut(s) 143, 566
MabI ACCWGGT 1 cut(s) 30
MaeI CTAG 5 cut(s) 413, 453, 597, 713, 721
MaeIII GTNAC 2 cut(s) 40, 138
MalI GATC 3 cut(s) 120, 573, 701
MboI GATC 3 cut(s) 118, 571, 699
MboII GAAGA 2 cut(s) 279, 612
MluCI AATT 2 cut(s) 169, 246
MmeI TCCRAC 3 cut(s) 64, 136, 455
MnlI CCTC 2 cut(s) 80, 490
MroI TCCGGA 1 cut(s) 463
MroNI GCCGGC 2 cut(s) 442, 484
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 5 cut(s) 443, 464, 485, 494, 615
MspR9I CCNGG 3 cut(s) 32, 294, 616
MvaI CCWGG 2 cut(s) 32, 294
MwoI GCNNNNNNNGC 4 cut(s) 374, 383, 386, 485
NaeI GCCGGC 2 cut(s) 444, 486
NciI CCSGG 1 cut(s) 616
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 118, 571, 699
NgoMIV GCCGGC 2 cut(s) 442, 484
NheI GCTAGC 1 cut(s) 712
NlaIII CATG 4 cut(s) 49, 67, 194, 706
NlaIV GGNNCC 3 cut(s) 462, 468, 498
NmuCI GTSAC 2 cut(s) 40, 138
PaqCI CACCTGC 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PdiI GCCGGC 2 cut(s) 444, 486
PfeI GAWTC 4 cut(s) 56, 107, 224, 416
PinAI ACCGGT 1 cut(s) 493
PkrI GCNGC 3 cut(s) 7, 379, 388
Psp6I CCWGG 2 cut(s) 30, 292
PspGI CCWGG 2 cut(s) 30, 292
PspN4I GGNNCC 3 cut(s) 462, 468, 498
PspPI GGNCC 1 cut(s) 89
RsaI GTAC 2 cut(s) 179, 498
RsaNI GTAC 2 cut(s) 178, 497
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 6, 378, 387
Sau3AI GATC 3 cut(s) 118, 571, 699
Sau96I GGNCC 1 cut(s) 89
ScaI AGTACT 1 cut(s) 179
ScrFI CCNGG 3 cut(s) 32, 294, 616
SexAI ACCWGGT 1 cut(s) 30
SfaNI GCATC 2 cut(s) 143, 566
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 2 cut(s) 169, 246
SsiI CCGC 3 cut(s) 378, 626, 660
SspMI CTAG 5 cut(s) 413, 453, 597, 713, 721
StyD4I CCNGG 3 cut(s) 30, 292, 614
StyI CCWWGG 2 cut(s) 63, 337
TaaI ACNGT 4 cut(s) 82, 144, 260, 682
TaqI TCGA 1 cut(s) 610
TasI AATT 2 cut(s) 169, 246
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 4 cut(s) 56, 107, 224, 416
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 2 cut(s) 40, 138
TseI GCWGC 2 cut(s) 5, 386
Tsp45I GTSAC 2 cut(s) 40, 138
TspDTI ATGAA 4 cut(s) 41, 298, 359, 630
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 89
XspI CTAG 5 cut(s) 413, 453, 597, 713, 721
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.