MD17G1091800.v1.1

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0011928
Physical Location & Seq
Reverse (-)
7698219 .. 7699376
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1091800.v1.1.491

Sequence Viewer

Length: 720 bp
ATGGCAGCTCCAAGAACAACATTGATGAGCTTGGTTGTTGTGACCATGCTCATAGAATTGGCCATGGCAGCCACTTACATGGTCGGAGGTCCAAACGGCGCATGGGATTCGAGTACTGACCTTCAGACGTGGGCATCATTGCAGTCATTCTTAGTCGGAGATAATCTCAATTTTCAGTACTCACCAAACCATGATGTGATTGAAGTGCCAAAGGCAGACTATGATTCTTGCCAAGCAAGTAACTCAATTCAGTCTTACACTGGGGGAAGCACTACAATTCCTCTATCTTCTCCAGGCAAGAGGTACTTCATCTGTGGAACAATTGGACATTGTAGTCAAGGAATGAAGCTTGAAGTCAACACTCTTGCAACTTCTGCCACACCAACAGCTTCTCCTATAAGCCCTTCCCCACTAGAATCTCTTTCAGTTCCATCATCTTCACCGGAGACTCTTAGTTTGGCTCCAGAAACTTCCATTGCCTCGCCAGCAGAATCGGTAGCACAATATGCTCCCACATTGCCCCATACTTTGCCATCCGGATTGCCCATCAGTCCTGCATCAAACCCTACTGACATTCCTTCAATTGAAGCTCCTACTTCCATTTCTCGAACCGAGTCTTCAGGGCAACCTTCTGCATCATCATCGAACTACAAAGGCGGTCTCCCAATCAGTCTCACTATGGGGTTCAGCGTTGTGATCATGTTGTTGCTAGCCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

240

Amino Acids

24.79

Weight (kDa)

4.51

Isoelectric Point (pI)

66.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 115 2.4e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32300 AT2G32300
fragaria_vesca FvH4_6g43640 FvH4_6g43640
malus_domestica MD09G1104100.v1.1 MD17G1091800.v1.1
prunus_persica Prupe.3G221600_v2.0.a1
pyrus_communis pycom09g02730
rosa_chinensis RchiOBHm_Chr2g0160261
rosa_laevigata RLG00000021208
rosa_multiflora Rmu_sc0000403.1_g000002 Rmu_sc0008269.1_g000006
rosa_roxburghii Rroxscaffold_2G00089900
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG547900 Rh2BG561500 Rh2CG532200 Rh2DG569900
rosa_wichuraiana Rw2G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 333
AccIII TCCGGA 1 cut(s) 536
AciI CCGC 1 cut(s) 657
AcoI YGGCCR 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 107, 603
AfaI GTAC 3 cut(s) 115, 179, 305
AgsI TTSAA 4 cut(s) 203, 353, 582, 587
AjiI CACGTC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 5 cut(s) 8, 30, 349, 389, 590
AluI AGCT 5 cut(s) 8, 30, 349, 389, 590
Alw26I GTCTC 3 cut(s) 440, 665, 677
Aor13HI TCCGGA 1 cut(s) 536
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 5, 68
ArsI GACNNNNNNTTYG 2 cut(s) 439, 471
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 174, 432
AsuNHI GCTAGC 1 cut(s) 709
AvaII GGWCC 1 cut(s) 89
BalI TGGCCA 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 609
BbvI GCAGC 2 cut(s) 17, 80
BccI CCATC 3 cut(s) 439, 541, 554
BceAI ACGGC 1 cut(s) 112
BcgI CGANNNNNNTGC 4 cut(s) 90, 124, 624, 658
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 696
BcoDI GTCTC 3 cut(s) 440, 665, 677
BfaI CTAG 2 cut(s) 413, 710
BisI GCNGC 2 cut(s) 6, 69
BlsI GCNGC 2 cut(s) 7, 70
BmcAI AGTACT 2 cut(s) 115, 179
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 294
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 3 cut(s) 143, 566, 644
BmtI GCTAGC 1 cut(s) 713
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 609
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpmI CTGGAG 2 cut(s) 276, 447
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 2 cut(s) 442, 536
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 3 cut(s) 137, 474, 515
BseAI TCCGGA 1 cut(s) 536
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 533
BseMI GCAATG 3 cut(s) 137, 474, 515
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 17, 80
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 2 cut(s) 443, 537
BsmAI GTCTC 3 cut(s) 440, 665, 677
BsnI GGCC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 665
Bsp13I TCCGGA 1 cut(s) 536
Bsp143I GATC 1 cut(s) 696
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 657
BspANI GGCC 1 cut(s) 62
BspEI TCCGGA 1 cut(s) 536
BspLI GGNNCC 1 cut(s) 462
BspOI GCTAGC 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 3 cut(s) 137, 474, 515
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 294
BstAPI GCANNNNNTGC 2 cut(s) 374, 506
BstC8I GCNNGC 2 cut(s) 486, 711
BstDEI CTNAG 2 cut(s) 151, 452
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 533
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 699
BstMAI GTCTC 3 cut(s) 440, 665, 677
BstMBI GATC 1 cut(s) 696
BstMWI GCNNNNNNNGC 4 cut(s) 68, 374, 485, 506
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 17, 80
BstV2I GAAGAC 1 cut(s) 609
BstXI CCANNNNNNTGG 1 cut(s) 79
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 63
BtrI CACGTC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 533
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 486, 711
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 114, 178, 304
CviAII CATG 6 cut(s) 46, 64, 79, 102, 191, 700
CviQI GTAC 3 cut(s) 114, 178, 304
DdeI CTNAG 2 cut(s) 151, 452
DpnI GATC 1 cut(s) 698
DpnII GATC 1 cut(s) 696
DrdI GACNNNNNNGTC 1 cut(s) 333
DseDI GACNNNNNNGTC 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 107, 603
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 6 cut(s) 49, 67, 82, 105, 194, 703
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FatI CATG 6 cut(s) 45, 63, 78, 101, 190, 699
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 2 cut(s) 6, 69
FokI GGATG 1 cut(s) 520
Fsp4HI GCNGC 2 cut(s) 6, 69
FspBI CTAG 2 cut(s) 413, 710
GlaI GCGC 1 cut(s) 100
GluI GCNGC 2 cut(s) 6, 69
GsuI CTGGAG 2 cut(s) 276, 447
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 443, 537
HhaI GCGC 1 cut(s) 101
Hin1II CATG 6 cut(s) 49, 67, 82, 105, 194, 703
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 6 cut(s) 107, 224, 416, 448, 491, 614
HpaII CCGG 2 cut(s) 443, 537
HphI GGTGA 2 cut(s) 174, 432
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 86, 126, 158
Hpy188III TCNNGA 3 cut(s) 464, 537, 606
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 4 cut(s) 131, 414, 588, 639
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 142, 368, 557, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 374, 485, 506
HpyF3I CTNAG 2 cut(s) 151, 452
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 6 cut(s) 49, 67, 82, 105, 194, 703
HspAI GCGC 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 536
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 1 cut(s) 696
LmnI GCTCC 4 cut(s) 13, 466, 514, 595
LpnPI CCDG 9 cut(s) 246, 279, 306, 456, 477, 498, 550, 567, 606
Lsp1109I GCAGC 2 cut(s) 17, 80
LweI GCATC 3 cut(s) 143, 566, 644
MaeI CTAG 2 cut(s) 413, 710
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 40, 239
MalI GATC 1 cut(s) 698
MboI GATC 1 cut(s) 696
MboII GAAGA 3 cut(s) 279, 429, 609
MfeI CAATTG 2 cut(s) 321, 582
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 6 cut(s) 56, 169, 246, 276, 321, 582
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 2 cut(s) 442, 623
MmeI TCCRAC 2 cut(s) 64, 136
MnlI CCTC 4 cut(s) 80, 291, 294, 490
Mox20I TGGCCA 1 cut(s) 62
MroI TCCGGA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 77
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 2 cut(s) 443, 537
MspR9I CCNGG 1 cut(s) 294
MunI CAATTG 2 cut(s) 321, 582
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 4 cut(s) 68, 374, 485, 506
NcoI CCATGG 1 cut(s) 63
NdeII GATC 1 cut(s) 696
NheI GCTAGC 1 cut(s) 709
NlaIII CATG 6 cut(s) 49, 67, 82, 105, 194, 703
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 1 cut(s) 40
PfeI GAWTC 4 cut(s) 107, 224, 416, 491
PkrI GCNGC 2 cut(s) 7, 70
PleI GAGTC 2 cut(s) 442, 622
PpsI GAGTC 2 cut(s) 442, 622
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 1 cut(s) 89
RsaI GTAC 3 cut(s) 115, 179, 305
RsaNI GTAC 3 cut(s) 114, 178, 304
RseI CAYNNNNRTG 1 cut(s) 77
SatI GCNGC 2 cut(s) 6, 69
Sau3AI GATC 1 cut(s) 696
Sau96I GGNCC 1 cut(s) 89
ScaI AGTACT 2 cut(s) 115, 179
SchI GAGTC 2 cut(s) 442, 623
ScrFI CCNGG 1 cut(s) 294
SfaNI GCATC 3 cut(s) 143, 566, 644
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 77
Sse9I AATT 6 cut(s) 56, 169, 246, 276, 321, 582
SsiI CCGC 1 cut(s) 657
SspMI CTAG 2 cut(s) 413, 710
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 63
TaiI ACGT 1 cut(s) 131
TaqI TCGA 3 cut(s) 110, 607, 644
TasI AATT 6 cut(s) 56, 169, 246, 276, 321, 582
TatI WGTACW 2 cut(s) 113, 177
TfiI GAWTC 4 cut(s) 107, 224, 416, 491
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 5, 68
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 298, 359
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XspI CTAG 2 cut(s) 413, 710
ZrmI AGTACT 2 cut(s) 115, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.