Rroxscaffold_2G00089900

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011928
Physical Location & Seq
Reverse (-)
11780915 .. 11782015
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089900.1

Sequence Viewer

Length: 702 bp
ATGGCTGTACTTACAAGGACATTGATGAGCTTTGCTATCATGACCGTGCTCGTTGAATTGGCCACGGCAGCGACTTACACAGTTGGTGGTCCAAACGGCGGGTGGGATGCAACTACCGACCTGCAAACATGGGCGTCATCCCAGACATTCTTAGTCGGAGATAATCTAAATTTTCAGTACTCGCCTAGCCACAATGTGCTTGAGGTTTCAAAGGCAGACTATGATTCTTGCCAAGGAAGCAACTCAATTCAGGCATACAGTGGTGGCAGCACTACAATCCCTCTCTCTTCTGCAGGAAAGAGATATTTCATTTGTGGAACAAATGGGCATTGTAGCCAGGGAATGAAGCTTGAAGTTGACACTAGTCTTGCAACTAATTCTGCTCCTCCACCTACAGCTTCTCCAGCTGTAAACCTCGCTCCACAAGAATCTCCTTCAACTACTTTACCTCCTTCCTCGGACACTCCTTTGGCCTCCTCTCTTGCTCCAGACACTTCTGCTGCCTCACCCTCACCTGCACAATCACCAGAACTTGCCTTCAGTCCTACACCAACCGCTATTGACATACCTTCAACTGAATCTCCCACTTCCATCTCTCGAACCGGGTCCTCCCCAGAACCATCAGCTGCTTCATCTCTTAACAACATACGCGGTCTCACTCTGGGATTTGGTATCATGATGATGTTGTTTCTCGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

233

Amino Acids

23.96

Weight (kDa)

4.35

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 115 4.6e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32300 AT2G32300
fragaria_vesca FvH4_6g43640 FvH4_6g43640
malus_domestica MD09G1104100.v1.1 MD17G1091800.v1.1
prunus_persica Prupe.3G221600_v2.0.a1
pyrus_communis pycom09g02730
rosa_chinensis RchiOBHm_Chr2g0160261
rosa_laevigata RLG00000021208
rosa_multiflora Rmu_sc0000403.1_g000002 Rmu_sc0008269.1_g000006
rosa_roxburghii Rroxscaffold_2G00089900
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG547900 Rh2BG561500 Rh2CG532200 Rh2DG569900
rosa_wichuraiana Rw2G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 523
Acc36I ACCTGC 2 cut(s) 129, 523
AccII CGCG 1 cut(s) 651
AciI CCGC 3 cut(s) 99, 555, 651
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 134
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 9, 179
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 5 cut(s) 56, 210, 353, 438, 573
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 5 cut(s) 30, 349, 398, 407, 626
AluI AGCT 5 cut(s) 30, 349, 398, 407, 626
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 659
AoxI GGCC 2 cut(s) 60, 471
ApeKI GCWGC 4 cut(s) 68, 267, 500, 626
ApoI RAATTY 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 89, 606
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 3 cut(s) 498, 504, 516
AvaII GGWCC 2 cut(s) 89, 606
BalI TGGCCA 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 4 cut(s) 80, 279, 487, 613
BccI CCATC 2 cut(s) 599, 628
BceAI ACGGC 2 cut(s) 81, 112
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 659
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 2 cut(s) 186, 363
BfmI CTRYAG 2 cut(s) 291, 393
BfuAI ACCTGC 2 cut(s) 129, 523
BisI GCNGC 4 cut(s) 69, 268, 501, 627
BlsI GCNGC 4 cut(s) 70, 269, 502, 628
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 2 cut(s) 338, 604
Bme18I GGWCC 2 cut(s) 89, 606
BmgT120I GGNCC 2 cut(s) 89, 606
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 2 cut(s) 338, 604
BmsI GCATC 1 cut(s) 97
BoxI GACNNNNGTC 1 cut(s) 363
BpmI CTGGAG 2 cut(s) 387, 471
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 604
BsaHI GRCGYC 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 659
BsaJI CCNNGG 4 cut(s) 63, 232, 337, 456
BsaXI ACNNNNNCTCC 6 cut(s) 385, 415, 433, 463, 565, 595
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 4 cut(s) 63, 232, 337, 456
BseGI GGATG 2 cut(s) 112, 137
BseLI CCNNNNNNNGG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 375, 466
BseXI GCAGC 4 cut(s) 80, 279, 487, 613
BsgI GTGCAG 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 2 cut(s) 62, 473
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 603
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 659
BsnI GGCC 2 cut(s) 62, 473
Bso31I GGTCTC 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 51
BspACI CCGC 3 cut(s) 99, 555, 651
BspANI GGCC 2 cut(s) 62, 473
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 2 cut(s) 39, 675
BspLI GGNNCC 1 cut(s) 607
BspMAI CTGCAG 1 cut(s) 295
BspMI ACCTGC 2 cut(s) 129, 523
BspTNI GGTCTC 1 cut(s) 659
BssECI CCNNGG 4 cut(s) 63, 232, 337, 456
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 3 cut(s) 46, 82, 260
Bst6I CTCTTC 1 cut(s) 292
BstACI GRCGYC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 112, 137
BstFNI CGCG 1 cut(s) 651
BstMAI GTCTC 1 cut(s) 659
BstMWI GCNNNNNNNGC 3 cut(s) 68, 237, 404
BstNI CCWGG 1 cut(s) 338
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 336, 602
BstSFI CTRYAG 2 cut(s) 291, 393
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 4 cut(s) 80, 279, 487, 613
BsuRI GGCC 2 cut(s) 62, 473
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 112, 137
BtsIMutI CAGTG 1 cut(s) 265
BveI ACCTGC 2 cut(s) 129, 523
CciI TCATGA 2 cut(s) 39, 675
Cfr13I GGNCC 2 cut(s) 89, 606
CseI GACGC 1 cut(s) 123
Csp6I GTAC 2 cut(s) 8, 178
CviAII CATG 3 cut(s) 40, 129, 676
CviQI GTAC 2 cut(s) 8, 178
DdeI CTNAG 1 cut(s) 151
DraIII CACNNNGTG 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 659
Eco47I GGWCC 2 cut(s) 89, 606
Eco57I CTGAAG 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 3 cut(s) 43, 132, 679
FaiI YATR 7 cut(s) 41, 130, 222, 256, 566, 647, 677
FatI CATG 3 cut(s) 39, 128, 675
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 4 cut(s) 69, 268, 501, 627
FokI GGATG 2 cut(s) 119, 124
Fsp4HI GCNGC 4 cut(s) 69, 268, 501, 627
FspBI CTAG 2 cut(s) 186, 363
GluI GCNGC 4 cut(s) 69, 268, 501, 627
GsuI CTGGAG 2 cut(s) 387, 471
HaeIII GGCC 2 cut(s) 62, 473
HapII CCGG 1 cut(s) 603
HgaI GACGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 3 cut(s) 43, 132, 679
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 3 cut(s) 224, 428, 578
HpaII CCGG 1 cut(s) 603
HphI GGTGA 3 cut(s) 498, 504, 516
Hpy166II GTNNAC 2 cut(s) 358, 412
Hpy188I TCNGA 2 cut(s) 158, 460
Hpy188III TCNNGA 4 cut(s) 40, 488, 597, 676
Hpy8I GTNNAC 2 cut(s) 358, 412
HpyAV CCTTC 4 cut(s) 444, 462, 547, 579
HpyCH4III ACNGT 3 cut(s) 46, 82, 260
HpyCH4V TGCA 5 cut(s) 110, 124, 293, 371, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 237, 404
HpyF3I CTNAG 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 3 cut(s) 43, 132, 679
LmnI GCTCC 3 cut(s) 388, 424, 490
Lsp1109I GCAGC 4 cut(s) 80, 279, 487, 613
LweI GCATC 1 cut(s) 97
MaeI CTAG 2 cut(s) 186, 363
MboII GAAGA 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 4 cut(s) 56, 169, 246, 376
MluNI TGGCCA 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 136
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 639
MslI CAYNNNNRTG 2 cut(s) 44, 680
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 2 cut(s) 407, 626
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 2 cut(s) 338, 604
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 3 cut(s) 68, 237, 404
NciI CCSGG 1 cut(s) 604
NlaIII CATG 3 cut(s) 43, 132, 679
NlaIV GGNNCC 1 cut(s) 607
PagI TCATGA 2 cut(s) 39, 675
PaqCI CACCTGC 1 cut(s) 523
PfeI GAWTC 3 cut(s) 224, 428, 578
PkrI GCNGC 4 cut(s) 70, 269, 502, 628
PpuMI RGGWCCY 1 cut(s) 606
PshAI GACNNNNGTC 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 2 cut(s) 89, 606
PspPPI RGGWCCY 1 cut(s) 606
PstI CTGCAG 1 cut(s) 295
PvuII CAGCTG 2 cut(s) 407, 626
RsaI GTAC 2 cut(s) 9, 179
RsaNI GTAC 2 cut(s) 8, 178
RseI CAYNNNNRTG 2 cut(s) 44, 680
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 4 cut(s) 69, 268, 501, 627
Sau96I GGNCC 2 cut(s) 89, 606
ScaI AGTACT 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 338, 604
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 2 cut(s) 291, 393
SinI GGWCC 2 cut(s) 89, 606
SmiMI CAYNNNNRTG 2 cut(s) 44, 680
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 4 cut(s) 56, 169, 246, 376
SsiI CCGC 3 cut(s) 99, 555, 651
SspMI CTAG 2 cut(s) 186, 363
StyD4I CCNGG 2 cut(s) 336, 602
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 46, 82, 260
TaqI TCGA 1 cut(s) 598
TasI AATT 4 cut(s) 56, 169, 246, 376
TatI WGTACW 2 cut(s) 7, 177
TfiI GAWTC 3 cut(s) 224, 428, 578
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 1 cut(s) 265
TseI GCWGC 4 cut(s) 68, 267, 500, 626
TspDTI ATGAA 3 cut(s) 298, 359, 621
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 89, 606
XapI RAATTY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XspI CTAG 2 cut(s) 186, 363
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.