RLG00000021208

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011928
Physical Location & Seq
Forward (+)
72941055 .. 72942335
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021208

Sequence Viewer

Length: 702 bp
ATGGCTGTACTTACAAGGACATTGATAAGCTTTGCTATCATGACCATGCTCGTTGAACTGGCCACGGCAGTGACTTACACGGTTGGTGGTCGAAACGGCGGGTGGGATGCAACTACCGAACTGCAAACATGGGCGTCATCCCAGACATTCTTAGTCGGAGATAATCTAAATTTTCAGTACTCGCCTAGCCACAATGTGCTTGAGGTTTCAAAGGCAGACTATGATTCTTGCCAAGGAAGCAACTCAATTCAGGCATACAGTGGTGGCAGCACTACAATCCCTCTCTCTTCTGCAGGAAAGAGATACTTCATTTGTGGAACAAATGGGCATTGTAGCCAGGGAATGAAGCTTGAAGTTGACACTAGTCTTGCAACTACTTCTGCTCCTCCACCTACAGCTTCTCCAGCTGTAAACCTCGCTCCACAAGAATCTCCTTCAACTACTCTACCTCCTTCCCCGGACACTCCTTTGGCCTCCTCTCTTGCTCCAGACACTTCTGCTGTCTCATCCTCACCAGCACAATCACCAGAACTTGCCTTCAGTCCTACACCAAACGCTATTGACATACCTTCAACTGAATCTCCCACTTCCATCTCTCGAACCGGGTCCGCCCCAGAACCATCAGCTGCTTCATCTCTTAACAACATAGGCGGTCTCACTCTGGGATTTGGTATCATGATGATGTTGTTTCTCGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

234

Amino Acids

23.99

Weight (kDa)

4.37

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 115 6.3e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32300 AT2G32300
fragaria_vesca FvH4_6g43640 FvH4_6g43640
malus_domestica MD09G1104100.v1.1 MD17G1091800.v1.1
prunus_persica Prupe.3G221600_v2.0.a1
pyrus_communis pycom09g02730
rosa_chinensis RchiOBHm_Chr2g0160261
rosa_laevigata RLG00000021208
rosa_multiflora Rmu_sc0000403.1_g000002 Rmu_sc0008269.1_g000006
rosa_roxburghii Rroxscaffold_2G00089900
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG547900 Rh2BG561500 Rh2CG532200 Rh2DG569900
rosa_wichuraiana Rw2G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 99, 609, 651
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 134
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 9, 179
AgsI TTSAA 5 cut(s) 56, 210, 353, 438, 573
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 1 cut(s) 336
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 5 cut(s) 30, 349, 398, 407, 626
AluI AGCT 5 cut(s) 30, 349, 398, 407, 626
Alw26I GTCTC 2 cut(s) 508, 659
AoxI GGCC 2 cut(s) 60, 471
ApeKI GCWGC 2 cut(s) 267, 626
ApoI RAATTY 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 606
AsuC2I CCSGG 2 cut(s) 458, 604
AsuHPI GGTGA 2 cut(s) 504, 516
AvaII GGWCC 1 cut(s) 606
BalI TGGCCA 1 cut(s) 62
BbvI GCAGC 2 cut(s) 279, 613
BccI CCATC 2 cut(s) 599, 628
BceAI ACGGC 2 cut(s) 81, 112
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 2 cut(s) 458, 604
BcoDI GTCTC 2 cut(s) 508, 659
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 2 cut(s) 186, 363
BfmI CTRYAG 2 cut(s) 291, 393
BisI GCNGC 2 cut(s) 268, 627
BlsI GCNGC 2 cut(s) 269, 628
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 3 cut(s) 338, 458, 604
Bme18I GGWCC 1 cut(s) 606
BmgT120I GGNCC 1 cut(s) 606
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 3 cut(s) 338, 458, 604
BmsI GCATC 1 cut(s) 97
BoxI GACNNNNGTC 1 cut(s) 363
BpmI CTGGAG 2 cut(s) 387, 471
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 2 cut(s) 458, 604
BsaHI GRCGYC 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 659
BsaJI CCNNGG 4 cut(s) 63, 232, 337, 456
BsaXI ACNNNNNCTCC 8 cut(s) 367, 385, 397, 415, 433, 463, 565, 595
Bse1I ACTGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 4 cut(s) 63, 232, 337, 456
BseGI GGATG 3 cut(s) 112, 137, 506
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 2 cut(s) 375, 466
BseXI GCAGC 2 cut(s) 279, 613
BshFI GGCC 2 cut(s) 62, 473
BsiSI CCGG 2 cut(s) 458, 603
BsmAI GTCTC 2 cut(s) 508, 659
BsnI GGCC 2 cut(s) 62, 473
Bso31I GGTCTC 1 cut(s) 659
BspACI CCGC 3 cut(s) 99, 609, 651
BspANI GGCC 2 cut(s) 62, 473
BspHI TCATGA 2 cut(s) 39, 675
BspLI GGNNCC 1 cut(s) 607
BspMAI CTGCAG 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 659
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 4 cut(s) 63, 232, 337, 456
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 82, 260
Bst6I CTCTTC 1 cut(s) 292
BstACI GRCGYC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 3 cut(s) 112, 137, 506
BstMAI GTCTC 2 cut(s) 508, 659
BstMWI GCNNNNNNNGC 2 cut(s) 237, 404
BstNI CCWGG 1 cut(s) 338
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 3 cut(s) 336, 456, 602
BstSFI CTRYAG 2 cut(s) 291, 393
BstV1I GCAGC 2 cut(s) 279, 613
BsuRI GGCC 2 cut(s) 62, 473
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 3 cut(s) 112, 137, 506
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 75, 265
CciI TCATGA 2 cut(s) 39, 675
Cfr13I GGNCC 1 cut(s) 606
CseI GACGC 1 cut(s) 123
Csp6I GTAC 2 cut(s) 8, 178
CviAII CATG 4 cut(s) 40, 46, 129, 676
CviQI GTAC 2 cut(s) 8, 178
DdeI CTNAG 1 cut(s) 151
DraIII CACNNNGTG 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
EciI GGCGGA 1 cut(s) 598
Eco130I CCWWGG 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 606
Eco57I CTGAAG 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 4 cut(s) 43, 49, 132, 679
FaiI YATR 8 cut(s) 41, 47, 130, 222, 256, 566, 647, 677
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FatI CATG 4 cut(s) 39, 45, 128, 675
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 268, 627
FokI GGATG 3 cut(s) 119, 124, 493
Fsp4HI GCNGC 2 cut(s) 268, 627
FspBI CTAG 2 cut(s) 186, 363
GluI GCNGC 2 cut(s) 268, 627
GsuI CTGGAG 2 cut(s) 387, 471
HaeIII GGCC 2 cut(s) 62, 473
HapII CCGG 2 cut(s) 458, 603
HgaI GACGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 4 cut(s) 43, 49, 132, 679
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 2 cut(s) 28, 347
HinfI GANTC 3 cut(s) 224, 428, 578
HpaII CCGG 2 cut(s) 458, 603
HphI GGTGA 2 cut(s) 504, 516
Hpy166II GTNNAC 2 cut(s) 358, 412
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 4 cut(s) 40, 488, 597, 676
Hpy8I GTNNAC 2 cut(s) 358, 412
HpyAV CCTTC 4 cut(s) 444, 462, 547, 579
HpyCH4III ACNGT 2 cut(s) 82, 260
HpyCH4V TGCA 4 cut(s) 110, 124, 293, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 404
HpyF3I CTNAG 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 4 cut(s) 43, 49, 132, 679
LmnI GCTCC 3 cut(s) 388, 424, 490
Lsp1109I GCAGC 2 cut(s) 279, 613
LweI GCATC 1 cut(s) 97
MaeI CTAG 2 cut(s) 186, 363
MaeIII GTNAC 1 cut(s) 70
MboII GAAGA 1 cut(s) 279
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 169, 246
MluNI TGGCCA 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 8 cut(s) 196, 291, 396, 425, 459, 484, 487, 520
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 639
MslI CAYNNNNRTG 3 cut(s) 44, 68, 680
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 2 cut(s) 407, 626
MspI CCGG 2 cut(s) 458, 603
MspR9I CCNGG 3 cut(s) 338, 458, 604
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 2 cut(s) 237, 404
NciI CCSGG 2 cut(s) 458, 604
NlaIII CATG 4 cut(s) 43, 49, 132, 679
NlaIV GGNNCC 1 cut(s) 607
NmuCI GTSAC 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 68
PagI TCATGA 2 cut(s) 39, 675
PfeI GAWTC 3 cut(s) 224, 428, 578
PkrI GCNGC 2 cut(s) 269, 628
PshAI GACNNNNGTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 1 cut(s) 606
PstI CTGCAG 1 cut(s) 295
PvuII CAGCTG 2 cut(s) 407, 626
RsaI GTAC 2 cut(s) 9, 179
RsaNI GTAC 2 cut(s) 8, 178
RseI CAYNNNNRTG 3 cut(s) 44, 68, 680
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 2 cut(s) 268, 627
Sau96I GGNCC 1 cut(s) 606
ScaI AGTACT 1 cut(s) 179
ScrFI CCNGG 3 cut(s) 338, 458, 604
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 2 cut(s) 291, 393
SinI GGWCC 1 cut(s) 606
SmiMI CAYNNNNRTG 3 cut(s) 44, 68, 680
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 2 cut(s) 169, 246
SsiI CCGC 3 cut(s) 99, 609, 651
SspMI CTAG 2 cut(s) 186, 363
StyD4I CCNGG 3 cut(s) 336, 456, 602
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 82, 260
TaqI TCGA 2 cut(s) 91, 598
TasI AATT 2 cut(s) 169, 246
TatI WGTACW 2 cut(s) 7, 177
TfiI GAWTC 3 cut(s) 224, 428, 578
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 2 cut(s) 75, 265
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 2 cut(s) 267, 626
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 298, 359, 621
TspRI CASTG 2 cut(s) 75, 265
VpaK11BI GGWCC 1 cut(s) 606
XapI RAATTY 1 cut(s) 169
XspI CTAG 2 cut(s) 186, 363
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.