AT2G32300

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011928
Physical Location & Seq
Forward (+)
13722362 .. 13723641
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32300.2

Sequence Viewer

Length: 786 bp
ATGGCATCTAGAGAAATGCTGATCATAATCTCGGTCCTCGCTACTACACTCATTGGTTTAACAGTAGCTACTGACCATACCATTGGTGGTCCTAGTGGTTGGACTGTAGGAGCTAGTCTTCGAACTTGGGCTGCAGGACAAACATTTGCTGTTGGAGACAATCTTGTTTTCTCCTACCCTGCTGCGTTCCACGACGTCGTTGAAGTCACAAAACCCGAATTCGATAGCTGTCAAGCGGTTAAACCGCTTATAACGTTTGCTAATGGAAACTCCTTGGTTCCTCTTACTACTCCTGGAAAAAGGTACTTCATTTGTGGAATGCCGGGACATTGTAGCCAAGGGATGAAACTTGAAGTAAACGTTGTTCCAACCGCAACCGTAGCACCAACCGCACCGCTTCCAAACACCGTCCCATCTCTAAACGCGCCTTCACCTTCTTCTGTTCTACCTATTCAACCTCTTTTACCTCTTAACCCTGTCCCAGTTCTCTCTCCATCTTCTTCTACTCCACTTCCTTCCTCCTCTCTGCCTCTCATTCCTCCACTTTCTCCGGCACTATCTCCGGCTACTGCAGCGGGGACTTCTCTGCCGTTATTCCCAGGCTCACCAGGTAGCTCTAGCAGCACAACATCCACCAAAACCGTCGGGACCTTCCCTTCTAGTACTACCGGTACAACGGCCGATCTTGCTGGCGCAGACTCTCCTCCGGCTGACTCCTCCTCTGCCGCGAAAACACTTGTTTTAGGATTTGGATTCATGGTTGCTATGATGCTTCATTTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

261

Amino Acids

26.45

Weight (kDa)

6.02

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 64 - 145 7.4e-30 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011928)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32300 AT2G32300
fragaria_vesca FvH4_6g43640 FvH4_6g43640
malus_domestica MD09G1104100.v1.1 MD17G1091800.v1.1
prunus_persica Prupe.3G221600_v2.0.a1
pyrus_communis pycom09g02730
rosa_chinensis RchiOBHm_Chr2g0160261
rosa_laevigata RLG00000021208
rosa_multiflora Rmu_sc0000403.1_g000002 Rmu_sc0008269.1_g000006
rosa_roxburghii Rroxscaffold_2G00089900
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG547900 Rh2BG561500 Rh2CG532200 Rh2DG569900
rosa_wichuraiana Rw2G045330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AatII GACGTC 1 cut(s) 198
AccII CGCG 2 cut(s) 425, 728
AciI CCGC 7 cut(s) 236, 245, 372, 390, 395, 575, 726
AclI AACGTT 2 cut(s) 254, 360
AcoI YGGCCR 1 cut(s) 678
AcsI RAATTY 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 3 cut(s) 305, 664, 673
AgeI ACCGGT 1 cut(s) 668
AgsI TTSAA 3 cut(s) 203, 353, 455
AjnI CCWGG 3 cut(s) 292, 598, 607
AluBI AGCT 4 cut(s) 68, 113, 228, 615
AluI AGCT 4 cut(s) 68, 113, 228, 615
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 1 cut(s) 678
ApeKI GCWGC 4 cut(s) 131, 182, 572, 621
ApoI RAATTY 1 cut(s) 218
AsiGI ACCGGT 1 cut(s) 668
AspLEI GCGC 2 cut(s) 427, 695
AspS9I GGNCC 3 cut(s) 34, 89, 648
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 2 cut(s) 423, 597
AsuII TTCGAA 1 cut(s) 121
AvaII GGWCC 3 cut(s) 34, 89, 648
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 4 cut(s) 118, 169, 584, 633
BccI CCATC 2 cut(s) 421, 502
BceAI ACGGC 2 cut(s) 574, 693
BciT130I CCWGG 3 cut(s) 294, 600, 609
BclI TGATCA 1 cut(s) 21
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 5 cut(s) 9, 93, 114, 618, 660
BfmI CTRYAG 3 cut(s) 105, 132, 570
BisI GCNGC 5 cut(s) 132, 183, 573, 622, 726
BlsI GCNGC 5 cut(s) 133, 184, 574, 623, 727
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 4 cut(s) 294, 324, 600, 609
Bme18I GGWCC 3 cut(s) 34, 89, 648
BmgT120I GGNCC 3 cut(s) 34, 89, 648
BmiI GGNNCC 2 cut(s) 279, 649
BmrFI CCNGG 4 cut(s) 294, 324, 600, 609
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 2 cut(s) 14, 759
BmuI ACTGGG 1 cut(s) 476
BpiI GAAGAC 1 cut(s) 110
Bpu14I TTCGAA 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 273, 337, 598
BsaWI WCCGGW 1 cut(s) 668
Bse118I RCCGGY 1 cut(s) 668
Bse1I ACTGG 1 cut(s) 482
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 3 cut(s) 294, 600, 609
BseDI CCNNGG 3 cut(s) 273, 337, 598
BseGI GGATG 2 cut(s) 348, 629
BseJI GATNNNNATC 1 cut(s) 26
BseNI ACTGG 1 cut(s) 482
BseRI GAGGAG 4 cut(s) 511, 693, 706, 709
BseX3I CGGCCG 1 cut(s) 678
BseXI GCAGC 4 cut(s) 118, 169, 584, 633
Bsh1236I CGCG 2 cut(s) 425, 728
Bsh1285I CGRYCG 1 cut(s) 681
BshFI GGCC 1 cut(s) 680
BshTI ACCGGT 1 cut(s) 668
BsiEI CGRYCG 1 cut(s) 681
BsiSI CCGG 5 cut(s) 323, 551, 563, 669, 707
BslFI GGGAC 5 cut(s) 339, 395, 464, 592, 661
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 5 cut(s) 339, 395, 464, 592, 661
BsmI GAATGC 1 cut(s) 324
BsnI GGCC 1 cut(s) 680
Bsp119I TTCGAA 1 cut(s) 121
Bsp143I GATC 2 cut(s) 21, 682
BspACI CCGC 7 cut(s) 236, 245, 372, 390, 395, 575, 726
BspANI GGCC 1 cut(s) 680
BspFNI CGCG 2 cut(s) 425, 728
BspLI GGNNCC 2 cut(s) 279, 649
BspMAI CTGCAG 2 cut(s) 136, 574
BspT104I TTCGAA 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 668
BsrI ACTGG 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 668
BssECI CCNNGG 3 cut(s) 273, 337, 598
BssMI GATC 2 cut(s) 21, 682
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 273, 337
Bst2UI CCWGG 3 cut(s) 294, 600, 609
Bst4CI ACNGT 5 cut(s) 64, 106, 379, 409, 643
BstACI GRCGYC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 691
BstF5I GGATG 2 cut(s) 348, 629
BstFNI CGCG 2 cut(s) 425, 728
BstHHI GCGC 2 cut(s) 427, 695
BstKTI GATC 2 cut(s) 24, 685
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 21, 682
BstMCI CGRYCG 1 cut(s) 681
BstMWI GCNNNNNNNGC 5 cut(s) 380, 389, 572, 621, 686
BstNI CCWGG 3 cut(s) 294, 600, 609
BstSCI CCNGG 4 cut(s) 292, 322, 598, 607
BstSFI CTRYAG 3 cut(s) 105, 132, 570
BstUI CGCG 2 cut(s) 425, 728
BstV1I GCAGC 4 cut(s) 118, 169, 584, 633
BstV2I GAAGAC 1 cut(s) 110
BstXI CCANNNNNNTGG 1 cut(s) 83
BstZI CGGCCG 1 cut(s) 678
BsuRI GGCC 1 cut(s) 680
BtsCI GGATG 2 cut(s) 348, 629
Cac8I GCNNGC 1 cut(s) 691
CfoI GCGC 2 cut(s) 427, 695
Cfr10I RCCGGY 1 cut(s) 668
Cfr13I GGNCC 3 cut(s) 34, 89, 648
CsiI ACCWGGT 1 cut(s) 607
Csp6I GTAC 3 cut(s) 304, 663, 672
CspAI ACCGGT 1 cut(s) 668
CviAII CATG 1 cut(s) 757
CviQI GTAC 3 cut(s) 304, 663, 672
DpnI GATC 2 cut(s) 23, 684
DpnII GATC 2 cut(s) 21, 682
EaeI YGGCCR 1 cut(s) 678
EagI CGGCCG 1 cut(s) 678
EclXI CGGCCG 1 cut(s) 678
Eco130I CCWWGG 2 cut(s) 273, 337
Eco47I GGWCC 3 cut(s) 34, 89, 648
Eco52I CGGCCG 1 cut(s) 678
EcoO109I RGGNCCY 1 cut(s) 648
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 3 cut(s) 292, 598, 607
EcoT14I CCWWGG 2 cut(s) 273, 337
ErhI CCWWGG 2 cut(s) 273, 337
FaeI CATG 1 cut(s) 760
FaiI YATR 5 cut(s) 26, 78, 251, 758, 767
FaqI GGGAC 5 cut(s) 339, 395, 464, 592, 661
FatI CATG 1 cut(s) 756
FauI CCCGC 1 cut(s) 568
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 5 cut(s) 132, 183, 573, 622, 726
FokI GGATG 2 cut(s) 355, 616
Fsp4HI GCNGC 5 cut(s) 132, 183, 573, 622, 726
FspBI CTAG 5 cut(s) 9, 93, 114, 618, 660
GlaI GCGC 2 cut(s) 426, 694
GluI GCNGC 5 cut(s) 132, 183, 573, 622, 726
HaeIII GGCC 1 cut(s) 680
HapII CCGG 5 cut(s) 323, 551, 563, 669, 707
HhaI GCGC 2 cut(s) 427, 695
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 760
Hin6I GCGC 2 cut(s) 425, 693
HinP1I GCGC 2 cut(s) 425, 693
HinfI GANTC 3 cut(s) 698, 713, 753
HpaII CCGG 5 cut(s) 323, 551, 563, 669, 707
HphI GGTGA 2 cut(s) 423, 597
Hpy166II GTNNAC 1 cut(s) 358
Hpy188III TCNNGA 2 cut(s) 9, 646
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 3 cut(s) 197, 200, 647
HpyAV CCTTC 5 cut(s) 438, 444, 525, 661, 666
HpyCH4III ACNGT 5 cut(s) 64, 106, 379, 409, 643
HpyCH4IV ACGT 3 cut(s) 195, 254, 360
HpyCH4V TGCA 2 cut(s) 134, 572
HpyF10VI GCNNNNNNNGC 5 cut(s) 380, 389, 572, 621, 686
HpySE526I ACGT 3 cut(s) 195, 254, 360
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 760
HspAI GCGC 2 cut(s) 425, 693
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 682
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 4 cut(s) 118, 169, 584, 633
LweI GCATC 2 cut(s) 14, 759
MabI ACCWGGT 1 cut(s) 607
MaeI CTAG 5 cut(s) 9, 93, 114, 618, 660
MaeII ACGT 3 cut(s) 195, 254, 360
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 23, 684
MboI GATC 2 cut(s) 21, 682
MboII GAAGA 4 cut(s) 110, 429, 489, 492
MluCI AATT 1 cut(s) 218
MlyI GAGTC 2 cut(s) 692, 707
MmeI TCCRAC 3 cut(s) 80, 133, 392
MseI TTAA 3 cut(s) 59, 240, 471
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 5 cut(s) 323, 551, 563, 669, 707
MspR9I CCNGG 4 cut(s) 294, 324, 600, 609
Mva1269I GAATGC 1 cut(s) 324
MvaI CCWGG 3 cut(s) 294, 600, 609
MvnI CGCG 2 cut(s) 425, 728
MwoI GCNNNNNNNGC 5 cut(s) 380, 389, 572, 621, 686
NciI CCSGG 1 cut(s) 324
NdeII GATC 2 cut(s) 21, 682
NlaIII CATG 1 cut(s) 760
NlaIV GGNNCC 2 cut(s) 279, 649
NmuCI GTSAC 1 cut(s) 205
NspV TTCGAA 1 cut(s) 121
PctI GAATGC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 753
PfoI TCCNGGA 1 cut(s) 292
PinAI ACCGGT 1 cut(s) 668
PkrI GCNGC 5 cut(s) 133, 184, 574, 623, 727
PleI GAGTC 2 cut(s) 692, 707
PpsI GAGTC 2 cut(s) 692, 707
PpuMI RGGWCCY 1 cut(s) 648
PsiI TTATAA 1 cut(s) 251
Psp1406I AACGTT 2 cut(s) 254, 360
Psp5II RGGWCCY 1 cut(s) 648
Psp6I CCWGG 3 cut(s) 292, 598, 607
PspGI CCWGG 3 cut(s) 292, 598, 607
PspN4I GGNNCC 2 cut(s) 279, 649
PspPI GGNCC 3 cut(s) 34, 89, 648
PspPPI RGGWCCY 1 cut(s) 648
PsrI GAACNNNNNNTAC 2 cut(s) 348, 380
PstI CTGCAG 2 cut(s) 136, 574
RsaI GTAC 3 cut(s) 305, 664, 673
RsaNI GTAC 3 cut(s) 304, 663, 672
SaqAI TTAA 3 cut(s) 59, 240, 471
SatI GCNGC 5 cut(s) 132, 183, 573, 622, 726
Sau3AI GATC 2 cut(s) 21, 682
Sau96I GGNCC 3 cut(s) 34, 89, 648
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 2 cut(s) 692, 707
ScrFI CCNGG 4 cut(s) 294, 324, 600, 609
SexAI ACCWGGT 1 cut(s) 607
SfaNI GCATC 2 cut(s) 14, 759
SfcI CTRYAG 3 cut(s) 105, 132, 570
SfuI TTCGAA 1 cut(s) 121
SinI GGWCC 3 cut(s) 34, 89, 648
Sse9I AATT 1 cut(s) 218
SsiI CCGC 7 cut(s) 236, 245, 372, 390, 395, 575, 726
SspMI CTAG 5 cut(s) 9, 93, 114, 618, 660
StyD4I CCNGG 4 cut(s) 292, 322, 598, 607
StyI CCWWGG 2 cut(s) 273, 337
TaaI ACNGT 5 cut(s) 64, 106, 379, 409, 643
TaiI ACGT 3 cut(s) 198, 257, 363
TaqI TCGA 2 cut(s) 121, 222
TaqII GACCGA 1 cut(s) 22
TasI AATT 1 cut(s) 218
TatI WGTACW 1 cut(s) 662
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 1 cut(s) 753
Tru1I TTAA 3 cut(s) 59, 240, 471
Tru9I TTAA 3 cut(s) 59, 240, 471
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 4 cut(s) 131, 182, 572, 621
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 4 cut(s) 298, 359, 745, 764
VpaK11BI GGWCC 3 cut(s) 34, 89, 648
XapI RAATTY 1 cut(s) 218
XbaI TCTAGA 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XspI CTAG 5 cut(s) 9, 93, 114, 618, 660
ZraI GACGTC 1 cut(s) 196
ZrmI AGTACT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.