Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016625

Physical Location & Seq

Genomic Coordinates Reverse (-)

22242074 .. 22242688

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G221700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTGCTATGTGGGAAAAGCAACAAAGATCTTCATTTTCGTAGTCACAGTGCTTGTGGTTCTTGGGCTCGTTTTGGGATTTGGGGTTTTGCGGCATGGCCTCCAGAAAACCCACAAATGCTCCGCCGATTCAGACTCTTGCCACTCTCTCTCTTCTCCTCCTCTCATCTTCCCCAACCCCAATTCCAGTTCGAACCAGCCCAACCCACCATCCACAGATCCCACCTTGACACAGCCCAGCCCACCTACCCCCAATTTTAACCCACCTCCACCTAACCCAGATTCAAACCAGCCTCCGCCGACCTCAATTTCAAGCCCACCTCCTCCACCGACCTCAATTCAAACCCCACCTCCTCCGGCGACCCCAATTCAAACTCCACCTCCTCCGGCGACCCCAATTCAAACTCCACCTCCTCCGGCGACCCCAATTCAAACTCCACCTCCGCCAGACCCAACTCTCAATCCGCCATCTTCTCGCCTCCGCCGGCTTCAACGGCGCAGCCGCCGTTCAATCCACCAAGGCAGCTCAGGTGACGCAGGCCCTGTTCCATGCTTAGCTCCAATTTCGTCTGCAAATTCATTTCCCCACAATTTTTTCTCTTTTTCATCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

21.47

Weight (kDa)

9.69

Isoelectric Point (pI)

84.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22070
fragaria_vesca	FvH4_6g43650
prunus_persica	Prupe.3G221700_v2.0.a1
pyrus_communis	pycom09g02720 pycom17g08890
rosa_chinensis	RchiOBHm_Chr2g0160271
rosa_laevigata	RLG00000021209
rosa_multiflora	Rmu_sc0000403.1_g000001 Rmu_sc0008269.1_g000005
rosa_roxburghii	Rroxscaffold_2G00089890
rosa_rugosa	Rorug02G0482500
rosa_samantha	Rh2AG548000 Rh2CG532300
rosa_wichuraiana	Rw2G045340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	91, 123, 296, 443, 464, 481, 502
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	574
AgsI	TTSAA	8 cut(s)	285, 312, 341, 371, 401, 431, 491, 510
AluBI	AGCT	2 cut(s)	525, 557
AluI	AGCT	2 cut(s)	525, 557
AlwI	GGATC	1 cut(s)	212
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	2 cut(s)	97, 538
ApeKI	GCWGC	2 cut(s)	498, 522
ApoI	RAATTY	1 cut(s)	574
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	542
AsuII	TTCGAA	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	510, 534
BccI	CCATC	2 cut(s)	217, 475
BceAI	ACGGC	2 cut(s)	489, 509
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	4 cut(s)	92, 499, 502, 523
BlpI	GCTNAGC	1 cut(s)	553
BlsI	GCNGC	4 cut(s)	93, 500, 503, 524
BmgT120I	GGNCC	1 cut(s)	539
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	526
Bpu1102I	GCTNAGC	1 cut(s)	553
Bpu14I	TTCGAA	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	517
Bse118I	RCCGGY	1 cut(s)	483
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	6 cut(s)	147, 150, 312, 342, 372, 402
BseXI	GCAGC	2 cut(s)	510, 534
BseYI	CCCAGC	1 cut(s)	236
BshFI	GGCC	2 cut(s)	99, 540
BsiSI	CCGG	4 cut(s)	356, 386, 416, 484
BsnI	GGCC	2 cut(s)	99, 540
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	27, 217
Bsp1720I	GCTNAGC	1 cut(s)	553
BspACI	CCGC	7 cut(s)	91, 123, 296, 443, 464, 481, 502
BspANI	GGCC	2 cut(s)	99, 540
BspCNI	CTCAG	1 cut(s)	539
BspPI	GGATC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	2 cut(s)	27, 217
BssT1I	CCWWGG	1 cut(s)	517
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	485, 538
BstDEI	CTNAG	2 cut(s)	526, 553
BstF5I	GGATG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	2 cut(s)	30, 220
BstMBI	GATC	2 cut(s)	27, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstV1I	GCAGC	2 cut(s)	510, 534
BstX2I	RGATCY	2 cut(s)	27, 217
BstYI	RGATCY	2 cut(s)	27, 217
BsuRI	GGCC	2 cut(s)	99, 540
BtsCI	GGATG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	485, 538
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	1 cut(s)	498
Cfr10I	RCCGGY	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	539
CseI	GACGC	1 cut(s)	542
CviAII	CATG	2 cut(s)	95, 549
DdeI	CTNAG	2 cut(s)	526, 553
DpnI	GATC	2 cut(s)	29, 219
DpnII	GATC	2 cut(s)	27, 217
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	5 cut(s)	112, 285, 432, 453, 470
Eco130I	CCWWGG	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	2 cut(s)	98, 552
FaiI	YATR	3 cut(s)	9, 96, 550
FatI	CATG	2 cut(s)	94, 548
Fnu4HI	GCNGC	4 cut(s)	92, 499, 502, 523
FokI	GGATG	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	4 cut(s)	92, 499, 502, 523
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	4 cut(s)	92, 499, 502, 523
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	99, 540
HapII	CCGG	4 cut(s)	356, 386, 416, 484
HgaI	GACGC	1 cut(s)	542
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	98, 552
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	128, 134, 281
HpaII	CCGG	4 cut(s)	356, 386, 416, 484
HphI	GGTGA	1 cut(s)	542
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	2 cut(s)	526, 553
Hsp92II	CATG	2 cut(s)	98, 552
HspAI	GCGC	1 cut(s)	496
KroI	GCCGGC	1 cut(s)	483
KroNI	GCCGGC	1 cut(s)	485
Kzo9I	GATC	2 cut(s)	27, 217
LmnI	GCTCC	2 cut(s)	125, 562
Lsp1109I	GCAGC	2 cut(s)	510, 534
MaeIII	GTNAC	2 cut(s)	43, 530
MalI	GATC	2 cut(s)	29, 219
MboI	GATC	2 cut(s)	27, 217
MboII	GAAGA	4 cut(s)	22, 144, 160, 462
MflI	RGATCY	2 cut(s)	27, 217
MhlI	GDGCHC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	128
MroNI	GCCGGC	1 cut(s)	483
MseI	TTAA	1 cut(s)	258
MspI	CCGG	4 cut(s)	356, 386, 416, 484
MwoI	GCNNNNNNNGC	1 cut(s)	493
NaeI	GCCGGC	1 cut(s)	485
NdeII	GATC	2 cut(s)	27, 217
NgoMIV	GCCGGC	1 cut(s)	483
NlaIII	CATG	2 cut(s)	98, 552
NmuCI	GTSAC	2 cut(s)	43, 530
NspV	TTCGAA	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	128, 281
PkrI	GCNGC	4 cut(s)	93, 500, 503, 524
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	539
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	2 cut(s)	27, 217
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	4 cut(s)	92, 499, 502, 523
Sau3AI	GATC	2 cut(s)	27, 217
Sau96I	GGNCC	1 cut(s)	539
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	69
SfuI	TTCGAA	1 cut(s)	191
SsiI	CCGC	7 cut(s)	91, 123, 296, 443, 464, 481, 502
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	191
TauI	GCSGC	2 cut(s)	94, 504
TfiI	GAWTC	2 cut(s)	128, 281
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	2 cut(s)	43, 530
TseI	GCWGC	2 cut(s)	498, 522
Tsp45I	GTSAC	2 cut(s)	43, 530
TspDTI	ATGAA	3 cut(s)	22, 567, 594
TspRI	CASTG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.