Rroxscaffold_2G00089890

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016625
Physical Location & Seq
Forward (+)
11777673 .. 11778191
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089890.1

Sequence Viewer

Length: 519 bp
ATGTGTTATGTGGGCAAAGCAACAAAGATCTTCATCTTCGTGGTCACAGTGCTTGTGGTTGTTGGCTTCATCTTGGGTTTCGGGATTCTCCGCCATGGCCTCCACGACAAGACCCACAAATGCTCCGGCGACTCCTGCAGCTCCCCACTCCAGTTCCCCAGCCCCGATTCCTCCAGCTCCACCTCTAATCCCATTTCCACCCAGCCCGCTTTCAGCCCGCCTCCACCGAGCTCCACTCCCAGCCCACCTACCCCAGATTTCGGCCCACCTCCGCCGACAACGATCTCCACTCCGACCCCACCTCCGCCCGACCCGACTTCCAATCCGCCGCCGCAAATCCCTGCTTCCAATCCGCCACCGCCAGTCACTGTTTCCAATCCGCCACCGCCAATCACGGCTTCCAATCCGCCACCGCCAATCACGGTTTCCAATCAGCCCCCGCCGCCGGTTTCTTTGGCAGCGCCGCCGTACAGTCCGCCGAGTGGGGTGCAATTGACGCCGGGTCCTGTCCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

17.51

Weight (kDa)

6.88

Isoelectric Point (pI)

76.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22070
fragaria_vesca FvH4_6g43650
prunus_persica Prupe.3G221700_v2.0.a1
pyrus_communis pycom09g02720 pycom17g08890
rosa_chinensis RchiOBHm_Chr2g0160271
rosa_laevigata RLG00000021209
rosa_multiflora Rmu_sc0000403.1_g000001 Rmu_sc0008269.1_g000005
rosa_roxburghii Rroxscaffold_2G00089890
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG548000 Rh2CG532300
rosa_wichuraiana Rw2G045340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 497
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 3 cut(s) 260, 445, 482
AhdI GACNNNNNGTC 1 cut(s) 501
AjuI GAANNNNNNNTTGG 4 cut(s) 382, 409, 414, 441
AluBI AGCT 3 cut(s) 141, 177, 231
AluI AGCT 3 cut(s) 141, 177, 231
Alw21I GWGCWC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 2 cut(s) 97, 262
ApeKI GCWGC 2 cut(s) 138, 458
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 2 cut(s) 263, 503
AsuC2I CCSGG 1 cut(s) 501
AvaII GGWCC 1 cut(s) 503
BanII GRGCYC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 150, 470
BceAI ACGGC 2 cut(s) 411, 451
BcgI CGANNNNNNTGC 2 cut(s) 469, 503
BcnI CCSGG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 464
BglII AGATCT 1 cut(s) 27
BisI GCNGC 6 cut(s) 139, 329, 332, 443, 459, 464
BlsI GCNGC 6 cut(s) 140, 330, 333, 444, 460, 465
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 503
BmeRI GACNNNNNGTC 1 cut(s) 501
BmgT120I GGNCC 2 cut(s) 263, 503
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 501
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpmI CTGGAG 2 cut(s) 134, 157
BpuMI CCSGG 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 286, 316
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 445, 482
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 2 cut(s) 151, 362
Bse8I GATNNNNATC 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 3 cut(s) 260, 445, 482
BseNI ACTGG 2 cut(s) 151, 362
BseXI GCAGC 2 cut(s) 150, 470
BseYI CCCAGC 3 cut(s) 158, 201, 239
BshFI GGCC 2 cut(s) 99, 264
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 3 cut(s) 126, 446, 500
BslI CCNNNNNNNGG 3 cut(s) 260, 445, 482
BsnI GGCC 2 cut(s) 99, 264
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 27, 282
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 2 cut(s) 99, 264
BspLI GGNNCC 1 cut(s) 504
BspMAI CTGCAG 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 2 cut(s) 151, 362
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 2 cut(s) 27, 282
BssNI GRCGYC 1 cut(s) 497
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 4 cut(s) 49, 370, 424, 473
BstACI GRCGYC 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 207, 218
BstDEI CTNAG 1 cut(s) 516
BstDSI CCRYGG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 2 cut(s) 30, 285
BstMBI GATC 2 cut(s) 27, 282
BstMWI GCNNNNNNNGC 3 cut(s) 135, 442, 496
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 150, 470
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 2 cut(s) 99, 264
BtgI CCRYGG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 54, 366
Cac8I GCNNGC 2 cut(s) 207, 218
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 2 cut(s) 263, 503
CseI GACGC 1 cut(s) 505
Csp6I GTAC 1 cut(s) 469
CviAII CATG 2 cut(s) 95, 512
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 1 cut(s) 516
DpnI GATC 2 cut(s) 29, 284
DpnII GATC 2 cut(s) 27, 282
DriI GACNNNNNGTC 1 cut(s) 501
Eam1105I GACNNNNNGTC 1 cut(s) 501
EciI GGCGGA 8 cut(s) 80, 261, 294, 315, 342, 369, 396, 465
Ecl136II GAGCTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 503
Eco53kI GAGCTC 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 2 cut(s) 98, 515
FaiI YATR 3 cut(s) 9, 96, 513
FatI CATG 2 cut(s) 94, 511
FauI CCCGC 3 cut(s) 214, 225, 447
Fnu4HI GCNGC 6 cut(s) 139, 329, 332, 443, 459, 464
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 6 cut(s) 139, 329, 332, 443, 459, 464
GlaI GCGC 1 cut(s) 462
GluI GCNGC 6 cut(s) 139, 329, 332, 443, 459, 464
GsaI CCCAGC 3 cut(s) 162, 205, 243
GsuI CTGGAG 2 cut(s) 134, 157
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 2 cut(s) 99, 264
HapII CCGG 3 cut(s) 126, 446, 500
HgaI GACGC 1 cut(s) 505
HhaI GCGC 1 cut(s) 463
Hin1I GRCGYC 1 cut(s) 497
Hin1II CATG 2 cut(s) 98, 515
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HinfI GANTC 3 cut(s) 85, 131, 167
HpaII CCGG 3 cut(s) 126, 446, 500
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 82
HpyCH4III ACNGT 4 cut(s) 49, 370, 424, 473
HpyCH4V TGCA 2 cut(s) 138, 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 442, 496
HpyF3I CTNAG 1 cut(s) 516
Hsp92I GRCGYC 1 cut(s) 497
Hsp92II CATG 2 cut(s) 98, 515
HspAI GCGC 1 cut(s) 461
Kzo9I GATC 2 cut(s) 27, 282
LmnI GCTCC 4 cut(s) 128, 146, 182, 236
Lsp1109I GCAGC 2 cut(s) 150, 470
MaeIII GTNAC 2 cut(s) 43, 364
MalI GATC 2 cut(s) 29, 284
MboI GATC 2 cut(s) 27, 282
MboII GAAGA 2 cut(s) 22, 28
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 491
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 6 cut(s) 110, 181, 193, 231, 279, 312
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 3 cut(s) 126, 446, 500
MspR9I CCNGG 1 cut(s) 501
MunI CAATTG 1 cut(s) 491
MwoI GCNNNNNNNGC 3 cut(s) 135, 442, 496
NciI CCSGG 1 cut(s) 501
NcoI CCATGG 1 cut(s) 94
NdeII GATC 2 cut(s) 27, 282
NlaIII CATG 2 cut(s) 98, 515
NlaIV GGNNCC 1 cut(s) 504
NmeAIII GCCGAG 1 cut(s) 504
NmuCI GTSAC 2 cut(s) 43, 364
PfeI GAWTC 2 cut(s) 85, 167
PkrI GCNGC 6 cut(s) 140, 330, 333, 444, 460, 465
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 503
PspFI CCCAGC 3 cut(s) 158, 201, 239
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 2 cut(s) 263, 503
PspPPI RGGWCCY 1 cut(s) 503
PstI CTGCAG 1 cut(s) 140
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 233
SatI GCNGC 6 cut(s) 139, 329, 332, 443, 459, 464
Sau3AI GATC 2 cut(s) 27, 282
Sau96I GGNCC 2 cut(s) 263, 503
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 1 cut(s) 233
SetI ASST 7 cut(s) 143, 179, 185, 233, 250, 271, 304
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 503
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 1 cut(s) 491
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 4 cut(s) 49, 370, 424, 473
TasI AATT 1 cut(s) 491
TauI GCSGC 4 cut(s) 331, 334, 445, 466
TfiI GAWTC 2 cut(s) 85, 167
TscAI CASTG 2 cut(s) 54, 373
TseFI GTSAC 2 cut(s) 43, 364
TseI GCWGC 2 cut(s) 138, 458
Tsp45I GTSAC 2 cut(s) 43, 364
TspDTI ATGAA 2 cut(s) 22, 58
TspRI CASTG 2 cut(s) 54, 373
VpaK11BI GGWCC 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.