FvH4_6g44970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016902
Physical Location & Seq
Reverse (-)
34560623 .. 34562333
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44970.t1

Sequence Viewer

Length: 489 bp
ATGGGAGGTGAATATAGTTGGAGAACCACCATAGCTCTGGTACCTCCAATGGTAGCTCCGCTTAATCCAAATGCAGAGAAAGAAGATGATCAGCAATGGAGTAGTAATTTCGACAACTCTGTCAATGCTGTGTACATGGGGTTTGTAGCTACTGCCATCCTCATATCAATGTTTATTGTTATCGCGATATTAGAGAGATTCTTCAGGAGGTCCAGAACAGCATCACAGCTCAGTGATACTGCTCGGACACATTTCAGTTACGATAACAATCCCAAGCTTGATCACAACTCTTCCAAAATTACAACCTATGCCAGAGAAGTATCTGTAGTGATGCCAGGAGAAGATACTCCTACCTTCATTGCACACCCTGCTCCACCACCATGTCCTCGCGAGCATGTCACTTGGCCTCACCACTCCATCGGTGCAACCCATGCTTCAACTTCAACCCCAACTCCTCAAGCAAAATTCCTAAGCCAAAGCCAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.99

Weight (kDa)

6.36

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016902)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44970
malus_domestica MD09G1091200.v1.1 MD17G1081100.v1.1
prunus_persica Prupe.3G233800_v2.0.a1
pyrus_communis pycom17g07940
rosa_chinensis RchiOBHm_Chr2g0162241
rosa_laevigata RLG00000021329
rosa_multiflora Rmu_sc0004020.1_g000026
rosa_roxburghii Rroxscaffold_2G00088230
rosa_rugosa Rorug02G0495300
rosa_samantha Rh2AG561800 Rh2BG574800 Rh2DG584800
rosa_wichuraiana Rw2G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
Acc65I GGTACC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 40
AccII CGCG 2 cut(s) 185, 390
AciI CCGC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 2 cut(s) 42, 134
AgsI TTSAA 2 cut(s) 438, 444
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 5 cut(s) 35, 56, 149, 229, 277
AluI AGCT 5 cut(s) 35, 56, 149, 229, 277
AoxI GGCC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 464
Asp718I GGTACC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 20, 401
AvaII GGWCC 1 cut(s) 210
BanI GGYRCC 1 cut(s) 40
BccI CCATC 2 cut(s) 164, 425
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 2 cut(s) 88, 280
BfmI CTRYAG 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 230, 321
Bpu10I CCTNAGC 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bse3DI GCAATG 2 cut(s) 101, 357
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 156
BseJI GATNNNNATC 1 cut(s) 267
BseMI GCAATG 2 cut(s) 101, 357
BseMII CTCAG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 444
Bsh1236I CGCG 2 cut(s) 185, 390
BshFI GGCC 1 cut(s) 406
BshNI GGYRCC 1 cut(s) 40
BsnI GGCC 1 cut(s) 406
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 2 cut(s) 88, 280
Bsp68I TCGCGA 2 cut(s) 185, 390
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 1 cut(s) 243
BspFNI CGCG 2 cut(s) 185, 390
BspLI GGNNCC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 40
BsrDI GCAATG 2 cut(s) 101, 357
BsrGI TGTACA 1 cut(s) 132
BssMI GATC 2 cut(s) 88, 280
Bst2UI CCWGG 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 295
BstAPI GCANNNNNTGC 2 cut(s) 368, 431
BstAUI TGTACA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 2 cut(s) 230, 470
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 2 cut(s) 185, 390
BstKTI GATC 2 cut(s) 91, 283
BstMBI GATC 2 cut(s) 88, 280
BstMWI GCNNNNNNNGC 2 cut(s) 368, 431
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 2 cut(s) 185, 390
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuRI GGCC 1 cut(s) 406
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 238
BtuMI TCGCGA 2 cut(s) 185, 390
Cac8I GCNNGC 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 2 cut(s) 41, 133
CviAII CATG 5 cut(s) 136, 381, 395, 431, 486
CviJI RGCY 8 cut(s) 35, 56, 149, 229, 277, 406, 474, 480
CviKI_1 RGCY 8 cut(s) 35, 56, 149, 229, 277, 406, 474, 480
CviQI GTAC 2 cut(s) 41, 133
DdeI CTNAG 2 cut(s) 230, 470
DpnI GATC 2 cut(s) 90, 282
DpnII GATC 2 cut(s) 88, 280
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 5 cut(s) 139, 384, 398, 434, 489
FaiI YATR 9 cut(s) 15, 32, 137, 164, 309, 382, 396, 432, 487
FatI CATG 5 cut(s) 135, 380, 394, 430, 485
FbaI TGATCA 2 cut(s) 88, 280
FokI GGATG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 406
Hin1II CATG 5 cut(s) 139, 384, 398, 434, 489
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 1 cut(s) 198
HphI GGTGA 2 cut(s) 20, 401
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 4 cut(s) 184, 205, 213, 389
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 74, 362, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 431
HpyF3I CTNAG 2 cut(s) 230, 470
Hsp92II CATG 5 cut(s) 139, 384, 398, 434, 489
KpnI GGTACC 1 cut(s) 44
Ksp22I TGATCA 2 cut(s) 88, 280
Kzo9I GATC 2 cut(s) 88, 280
LmnI GCTCC 2 cut(s) 61, 376
LpnPI CCDG 7 cut(s) 23, 190, 226, 321, 325, 348, 381
LweI GCATC 2 cut(s) 230, 321
MaeIII GTNAC 2 cut(s) 257, 397
MalI GATC 2 cut(s) 90, 282
MboI GATC 2 cut(s) 88, 280
MboII GAAGA 4 cut(s) 95, 193, 282, 353
MluCI AATT 3 cut(s) 106, 297, 464
MnlI CCTC 6 cut(s) 54, 170, 201, 396, 417, 465
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 2 cut(s) 167, 379
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 2 cut(s) 185, 390
MwoI GCNNNNNNNGC 2 cut(s) 368, 431
NdeII GATC 2 cut(s) 88, 280
NlaIII CATG 5 cut(s) 139, 384, 398, 434, 489
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 397
NruI TCGCGA 2 cut(s) 185, 390
NspI RCATGY 1 cut(s) 398
PfeI GAWTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 210
RruI TCGCGA 2 cut(s) 185, 390
RsaI GTAC 2 cut(s) 42, 134
RsaNI GTAC 2 cut(s) 41, 133
RseI CAYNNNNRTG 2 cut(s) 167, 379
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 2 cut(s) 88, 280
Sau96I GGNCC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 336
SfaNI GCATC 2 cut(s) 230, 321
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 167, 379
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 3 cut(s) 106, 297, 464
SsiI CCGC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 334
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 106, 297, 464
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 397
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 1 cut(s) 346
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 1 cut(s) 464
XceI RCATGY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.