Prupe.3G233800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016902
Physical Location & Seq
Reverse (-)
22965398 .. 22967985
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G233800.1

Sequence Viewer

Length: 456 bp
ATGGGGGGTGAAGATAATTGGGACGGCGGCATAGCTATGGCACCAGCCATGATGATGGCTGCACAAAATACAGAGAGAGAAGAAGAGCAGTGGAGGAACTTTAACAACTCAGTCAATGCAGTTTCCTTGGGTTTTGTTGCTACTGCCATTCTCATATCAATGTTTCTTGTTATGGCTATTTTTGAGAGATTTTTCAGGCCCAGATCATCACATCTGCCTTCAACTTCTCGAACCACTCGTTTCGATCTCCAGCAACAGATTGTCTACCAGAATCCCAAGCTTGATCACCACTCTCCCAAAATGACAAGTTATGCCAGAGAAGTTTCTGTGGTGATGCCTGGAGAAGATATTCCTACCTTCATTGCACATCCTGCACCTGCACCATGCCCCAGAGAGCATGCCGCGTGGCCTCTGCATCAACACAAGCCATGCCTCAACCCCTCCTCCTCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.95

Weight (kDa)

6.36

Isoelectric Point (pI)

57.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016902)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44970
malus_domestica MD09G1091200.v1.1 MD17G1081100.v1.1
prunus_persica Prupe.3G233800_v2.0.a1
pyrus_communis pycom17g07940
rosa_chinensis RchiOBHm_Chr2g0162241
rosa_laevigata RLG00000021329
rosa_multiflora Rmu_sc0004020.1_g000026
rosa_roxburghii Rroxscaffold_2G00088230
rosa_rugosa Rorug02G0495300
rosa_samantha Rh2AG561800 Rh2BG574800 Rh2DG584800
rosa_wichuraiana Rw2G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 404
AciI CCGC 2 cut(s) 27, 402
AgsI TTSAA 1 cut(s) 222
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 3 cut(s) 35, 280, 453
AluI AGCT 3 cut(s) 35, 280, 453
AoxI GGCC 2 cut(s) 197, 407
ApeKI GCWGC 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 198
AsuHPI GGTGA 3 cut(s) 20, 278, 343
BanI GGYRCC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 339
BclI TGATCA 1 cut(s) 283
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 3 cut(s) 28, 60, 402
BlsI GCNGC 3 cut(s) 29, 61, 403
Bme1390I CCNGG 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 2 cut(s) 324, 424
BpmI CTGGAG 2 cut(s) 233, 360
BpuEI CTTGAG 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 433, 436
BseXI GCAGC 1 cut(s) 46
BsgI GTGCAG 3 cut(s) 45, 357, 363
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 2 cut(s) 199, 409
BshNI GGYRCC 1 cut(s) 40
BslFI GGGAC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 2 cut(s) 199, 409
Bsp143I GATC 3 cut(s) 203, 244, 283
BspACI CCGC 2 cut(s) 27, 402
BspANI GGCC 2 cut(s) 199, 409
BspCNI CTCAG 1 cut(s) 122
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 3 cut(s) 203, 244, 283
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 404
BstKTI GATC 3 cut(s) 206, 247, 286
BstMBI GATC 3 cut(s) 203, 244, 283
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 337
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuRI GGCC 2 cut(s) 199, 409
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 95
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 399
Cfr13I GGNCC 1 cut(s) 198
CviAII CATG 4 cut(s) 49, 384, 398, 429
CviJI RGCY 9 cut(s) 35, 47, 59, 176, 199, 280, 409, 427, 453
CviKI_1 RGCY 9 cut(s) 35, 47, 59, 176, 199, 280, 409, 427, 453
DdeI CTNAG 1 cut(s) 109
DpnI GATC 3 cut(s) 205, 246, 285
DpnII GATC 3 cut(s) 203, 244, 283
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 4 cut(s) 52, 387, 401, 432
FaiI YATR 9 cut(s) 32, 38, 50, 155, 173, 312, 385, 399, 430
FaqI GGGAC 1 cut(s) 35
FatI CATG 4 cut(s) 48, 383, 397, 428
FbaI TGATCA 1 cut(s) 283
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 28, 60, 402
FokI GGATG 1 cut(s) 354
Fsp4HI GCNGC 3 cut(s) 28, 60, 402
GluI GCNGC 3 cut(s) 28, 60, 402
GsuI CTGGAG 2 cut(s) 233, 360
HaeIII GGCC 2 cut(s) 199, 409
Hin1II CATG 4 cut(s) 52, 387, 401, 432
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 271
HphI GGTGA 3 cut(s) 20, 278, 343
Hpy166II GTNNAC 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 228, 367
HpyCH4V TGCA 6 cut(s) 62, 119, 365, 374, 380, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 4 cut(s) 52, 387, 401, 432
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 3 cut(s) 203, 244, 283
LguI GCTCTTC 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 2 cut(s) 324, 424
MalI GATC 3 cut(s) 205, 246, 285
MboI GATC 3 cut(s) 203, 244, 283
MboII GAAGA 4 cut(s) 23, 92, 95, 356
MluCI AATT 1 cut(s) 16
MnlI CCTC 5 cut(s) 87, 420, 443, 451, 454
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 3 cut(s) 35, 53, 158
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 3 cut(s) 203, 244, 283
NlaIII CATG 4 cut(s) 52, 387, 401, 432
NlaIV GGNNCC 1 cut(s) 42
NspI RCATGY 1 cut(s) 401
PaeI GCATGC 1 cut(s) 401
PaqCI CACCTGC 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 3 cut(s) 29, 61, 403
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 198
RseI CAYNNNNRTG 3 cut(s) 35, 53, 158
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 3 cut(s) 28, 60, 402
Sau3AI GATC 3 cut(s) 203, 244, 283
Sau96I GGNCC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 339
SetI ASST 5 cut(s) 37, 282, 359, 379, 455
SfaNI GCATC 2 cut(s) 324, 424
SmiMI CAYNNNNRTG 3 cut(s) 35, 53, 158
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SphI GCATGC 1 cut(s) 401
Sse9I AATT 1 cut(s) 16
SsiI CCGC 2 cut(s) 27, 402
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 126
TaqI TCGA 2 cut(s) 229, 243
TasI AATT 1 cut(s) 16
TauI GCSGC 2 cut(s) 30, 404
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 95
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 349
TspRI CASTG 1 cut(s) 95
XceI RCATGY 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.