Rh2AG561800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016902
Physical Location & Seq
Reverse (-)
79143654 .. 79145970
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG561800.1

Sequence Viewer

Length: 486 bp
ATGGGAGGTGGAGAAAGTTGGAGAACCACCACAGCTCTGGTACCTCCAATGGCAGCTCCACTAAATCAAAATACAGAGAAAGATGATGAGCAATGGGGTAGTAATTTCAGCAACTCTGTCAATGCTGTGTACATGGGTTTTGTAGCTACTGCCATCCTCATATCAATGTTTATTGTTATGGCGATTTTCGAGAGATTCTTCAGGAGGCCCAGAACAACATCACAGCTCAGTCATACTGCTCGGACACATTTCGTCTACGATAACAATCCCAAGCTTGATCACAACTCTTCTAAAATTACAAATTATGCTAGAGAAGTATCTGTAGTGATGCCCGGAGAAGAAACTCCTACCTTCATTGCACACCCTGCTCCAGCACCATGTCCTCGCGAGCACGTCACTTGGCCTCTCCACTCCATCGACGCAGGCCATGCTTCAACTTCCACCCCCACTCCTCAAGCTAAATTCCAAAGCCAAATCCAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.87

Weight (kDa)

6.64

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016902)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44970
malus_domestica MD09G1091200.v1.1 MD17G1081100.v1.1
prunus_persica Prupe.3G233800_v2.0.a1
pyrus_communis pycom17g07940
rosa_chinensis RchiOBHm_Chr2g0162241
rosa_laevigata RLG00000021329
rosa_multiflora Rmu_sc0004020.1_g000026
rosa_roxburghii Rroxscaffold_2G00088230
rosa_rugosa Rorug02G0495300
rosa_samantha Rh2AG561800 Rh2BG574800 Rh2DG584800
rosa_wichuraiana Rw2G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 255
AccII CGCG 1 cut(s) 387
AcsI RAATTY 1 cut(s) 461
AcuI CTGAAG 1 cut(s) 184
AfaI GTAC 2 cut(s) 42, 131
AgsI TTSAA 1 cut(s) 435
AjiI CACGTC 1 cut(s) 394
AluBI AGCT 6 cut(s) 35, 56, 146, 226, 274, 458
AluI AGCT 6 cut(s) 35, 56, 146, 226, 274, 458
Alw21I GWGCWC 1 cut(s) 393
AoxI GGCC 3 cut(s) 206, 401, 424
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 461
Asp718I GGTACC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 333
BanI GGYRCC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 65
BccI CCATC 2 cut(s) 161, 422
BclI TGATCA 1 cut(s) 277
BcnI CCSGG 1 cut(s) 333
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 333
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 438
BpuMI CCSGG 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bse3DI GCAATG 2 cut(s) 98, 354
Bse8I GATNNNNATC 1 cut(s) 264
BseGI GGATG 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 264
BseMI GCAATG 2 cut(s) 98, 354
BseMII CTCAG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 441
BseXI GCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 3 cut(s) 208, 403, 426
BshNI GGYRCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 1 cut(s) 333
BsnI GGCC 3 cut(s) 208, 403, 426
Bsp1286I GDGCHC 1 cut(s) 393
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 1 cut(s) 277
Bsp68I TCGCGA 1 cut(s) 387
BspANI GGCC 3 cut(s) 208, 403, 426
BspCNI CTCAG 1 cut(s) 240
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 40
BsrDI GCAATG 2 cut(s) 98, 354
BsrGI TGTACA 1 cut(s) 129
BssMI GATC 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 292
BstAPI GCANNNNNTGC 2 cut(s) 365, 428
BstAUI TGTACA 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 389, 424
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 365, 428
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 65
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuRI GGCC 3 cut(s) 208, 403, 426
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 1 cut(s) 153
BtuMI TCGCGA 1 cut(s) 387
Cac8I GCNNGC 2 cut(s) 389, 424
Cfr13I GGNCC 1 cut(s) 207
CseI GACGC 1 cut(s) 428
Csp6I GTAC 2 cut(s) 41, 130
CviAII CATG 4 cut(s) 133, 378, 428, 483
CviQI GTAC 2 cut(s) 41, 130
DdeI CTNAG 1 cut(s) 227
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 184
FaeI CATG 4 cut(s) 136, 381, 431, 486
FaiI YATR 8 cut(s) 134, 161, 179, 234, 306, 379, 429, 484
FatI CATG 4 cut(s) 132, 377, 427, 482
FbaI TGATCA 1 cut(s) 277
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 309
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 3 cut(s) 208, 403, 426
HapII CCGG 1 cut(s) 333
HgaI GACGC 1 cut(s) 428
Hin1II CATG 4 cut(s) 136, 381, 431, 486
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 1 cut(s) 195
HpaII CCGG 1 cut(s) 333
Hpy166II GTNNAC 2 cut(s) 130, 256
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 4 cut(s) 190, 202, 386, 478
Hpy8I GTNNAC 2 cut(s) 130, 256
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 428
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 4 cut(s) 136, 381, 431, 486
KpnI GGTACC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 2 cut(s) 61, 373
LpnPI CCDG 7 cut(s) 23, 187, 223, 346, 378, 384, 408
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 318
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 394
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 3 cut(s) 190, 279, 350
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 4 cut(s) 103, 294, 301, 461
MnlI CCTC 6 cut(s) 54, 167, 198, 393, 414, 462
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 333
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 365, 428
NciI CCSGG 1 cut(s) 333
NdeII GATC 1 cut(s) 277
NlaIII CATG 4 cut(s) 136, 381, 431, 486
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 394
NruI TCGCGA 1 cut(s) 387
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 207
RruI TCGCGA 1 cut(s) 387
RsaI GTAC 2 cut(s) 42, 131
RsaNI GTAC 2 cut(s) 41, 130
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 393
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
Sse9I AATT 4 cut(s) 103, 294, 301, 461
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 331
TaiI ACGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 189, 417
TasI AATT 4 cut(s) 103, 294, 301, 461
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 1 cut(s) 195
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 343
XapI RAATTY 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.