Rroxscaffold_2G00088230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016902
Physical Location & Seq
Forward (+)
10236334 .. 10238217
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088230.1

Sequence Viewer

Length: 480 bp
ATGGGAGGTGGAGAAAGTTGGAGAACCACCATAGCTCTGGTACCTCCAATGGCAGCTCCACTAAATCAAAATACAGAGAAAGAAGATAAGCAATGGAATAGTAATTTCAACAACTCTGTCAATGCTGTGTACATGGGTTTTGTAGCTACTGCCATCCTCATATCAATGTTTATTGTTATGGCGATTTTCGAGAGATTCTTCAGGAGGCCCCGAACAACATCACAGCTCAGTCAGACTGCTCGGACACATTTCGTCTACAATCCCAAGCTTGATCACAACTCTTCTAAAATTACAAATTATGCTAGAGAAGTATCTGTAGTAATGCCCGGAGAAGAAACTCCTACCTTCATTGCACACCCTGCTCCAGCACCATGTCCTCGCGAGCACGTCACTTGGCCTCTCCACTCCATCGACGCAGGCCATGCTTCAACTTCAACCCCAACTCCTCAAGCTAAATTCCAAAGCCAAATCCAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.74

Weight (kDa)

8.89

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016902)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44970
malus_domestica MD09G1091200.v1.1 MD17G1081100.v1.1
prunus_persica Prupe.3G233800_v2.0.a1
pyrus_communis pycom17g07940
rosa_chinensis RchiOBHm_Chr2g0162241
rosa_laevigata RLG00000021329
rosa_multiflora Rmu_sc0004020.1_g000026
rosa_roxburghii Rroxscaffold_2G00088230
rosa_rugosa Rorug02G0495300
rosa_samantha Rh2AG561800 Rh2BG574800 Rh2DG584800
rosa_wichuraiana Rw2G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 255
AccII CGCG 1 cut(s) 381
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 184
AfaI GTAC 2 cut(s) 42, 131
AgsI TTSAA 3 cut(s) 109, 429, 435
AjiI CACGTC 1 cut(s) 388
AluBI AGCT 6 cut(s) 35, 56, 146, 226, 268, 452
AluI AGCT 6 cut(s) 35, 56, 146, 226, 268, 452
Alw21I GWGCWC 1 cut(s) 387
AoxI GGCC 3 cut(s) 206, 395, 418
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 455
Asp718I GGTACC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 327
BanI GGYRCC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 65
BccI CCATC 2 cut(s) 161, 416
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 1 cut(s) 327
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 327
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 42, 209
BmrFI CCNGG 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bse3DI GCAATG 2 cut(s) 98, 348
BseGI GGATG 1 cut(s) 153
BseMI GCAATG 2 cut(s) 98, 348
BseMII CTCAG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 3 cut(s) 208, 397, 420
BshNI GGYRCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 327
BsnI GGCC 3 cut(s) 208, 397, 420
Bsp1286I GDGCHC 1 cut(s) 387
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 1 cut(s) 271
Bsp68I TCGCGA 1 cut(s) 381
BspANI GGCC 3 cut(s) 208, 397, 420
BspCNI CTCAG 1 cut(s) 240
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 42, 209
BspT107I GGYRCC 1 cut(s) 40
BsrDI GCAATG 2 cut(s) 98, 348
BsrGI TGTACA 1 cut(s) 129
BssMI GATC 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 286
BstAPI GCANNNNNTGC 2 cut(s) 359, 422
BstAUI TGTACA 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 383, 418
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 381
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 359, 422
BstSCI CCNGG 1 cut(s) 325
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 65
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuRI GGCC 3 cut(s) 208, 397, 420
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 1 cut(s) 153
BtuMI TCGCGA 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 383, 418
Cfr13I GGNCC 1 cut(s) 207
CseI GACGC 1 cut(s) 422
Csp6I GTAC 2 cut(s) 41, 130
CviAII CATG 4 cut(s) 133, 372, 422, 477
CviQI GTAC 2 cut(s) 41, 130
DdeI CTNAG 1 cut(s) 227
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 207
FaeI CATG 4 cut(s) 136, 375, 425, 480
FaiI YATR 8 cut(s) 32, 134, 161, 179, 300, 373, 423, 478
FatI CATG 4 cut(s) 132, 371, 421, 476
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 303
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 3 cut(s) 208, 397, 420
HapII CCGG 1 cut(s) 327
HgaI GACGC 1 cut(s) 422
Hin1II CATG 4 cut(s) 136, 375, 425, 480
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 195
HpaII CCGG 1 cut(s) 327
Hpy166II GTNNAC 2 cut(s) 130, 256
Hpy188I TCNGA 2 cut(s) 234, 243
Hpy188III TCNNGA 4 cut(s) 190, 202, 380, 472
Hpy8I GTNNAC 2 cut(s) 130, 256
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 422
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 4 cut(s) 136, 375, 425, 480
KpnI GGTACC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 61, 367
LpnPI CCDG 6 cut(s) 23, 187, 340, 372, 378, 402
Lsp1109I GCAGC 1 cut(s) 65
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 4 cut(s) 95, 190, 273, 344
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 4 cut(s) 103, 288, 295, 455
MnlI CCTC 6 cut(s) 54, 167, 198, 387, 408, 456
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 359, 422
NciI CCSGG 1 cut(s) 327
NdeII GATC 1 cut(s) 271
NlaIII CATG 4 cut(s) 136, 375, 425, 480
NlaIV GGNNCC 2 cut(s) 42, 209
NmuCI GTSAC 1 cut(s) 388
NruI TCGCGA 1 cut(s) 381
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 42, 209
PspPI GGNCC 1 cut(s) 207
RruI TCGCGA 1 cut(s) 381
RsaI GTAC 2 cut(s) 42, 131
RsaNI GTAC 2 cut(s) 41, 130
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 387
SfcI CTRYAG 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
Sse9I AATT 4 cut(s) 103, 288, 295, 455
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 325
TaiI ACGT 1 cut(s) 390
TaqI TCGA 2 cut(s) 189, 411
TasI AATT 4 cut(s) 103, 288, 295, 455
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 1 cut(s) 195
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 337
XapI RAATTY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.