Rorug02G0495300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016902
Physical Location & Seq
Reverse (-)
62476258 .. 62478456
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0495300.1

Sequence Viewer

Length: 1440 bp
ATGTCTTCCAATAAGCCTCATGCTGTTTGTATTCCAGGTCCTGCTCAAAGCCATATAAAGGCTGTGCTTAAATTGGCAAAACTCCTACACCACAGAGGTTTTTATGTAACCTTTGTCAACACAGAGTTCAATCACAAGCGCTTCCTTAAGTCTCTAGGACCCAACTCCTTAGATGGCTTCCCTGATTTTCAGTTTGAAACCATTCCAGATGGCCTTCCAGATTCAAATGAAGATGCCACCCAAGACATTGCTTTACTTTGTGACTCTATCCGAAAAAATTTCTTGGCTCCTTTCCGTGATCTCCTCATAAAACTTAACAACACTCAGACTAATCCTCCAGTGACTTGCATTGTTTCAGATGGTTTCATGTCGATGTTTACCATCACAGCAGCTGAAGAAATTGGAGTCCCCATAGCACTCTTCTATACTGTTTCTGCTTCCACCTTCATGGGATTCAAACAATTTCGCACTTTGGTCCAAAAAGGGCTTGCACCATTCAAAGATGAGAGCTGGTTCACAAATGGATTTCTGGACGGAAAAATAGATTGGATTCCAGGAATGAAAGATATTCGTTTGAGGGATCTCCCAACCGTTTTTCAAACAACAGATCCCAATGACCCCATGTTTAACTTCAGCATGGAGGCCACGGATAGCGTTCATAAAGCTTCTGCAGTTGTATTACTTACTTTTGATGCTTTGGAACATGATGTTTTGGATGCTATCTCTTCTATGTTTGATCGGCCACTTGTTTATACAATTGGCCCTATCGAGTTACTTCTGAATCAGATTCCAAACTACCCTTTGGAGACTATGGGATACAGTCTGTGGAAAGAAGAATCTGAATGCCTCGAATGGTTGAAGAATAAGGCGCAAAATTCAGTAGTTTATGTGAACTTTGGTAGTGTAGCGGTCTTGACACCACAACAGCTTGTAGAGTTTGGTTGGGGACTTGCAAATAGCAAGATTCATTTTTTGTGGGTAATGAGGCCTGATCTTGTTATTGGTGGATCGGCTATTCTGCCACCTGAGTTTGTAGCTGAAACCAAAGAAAGAGGTCTGATAGCAAGTTGGTGTCCACAAGAGGAAGTGCTTAACCAAACTTCAGTTGGAGGGTTTCTTACACACTGTGGTTGGAATTCGACCATTGAGAGTCTGACAGCTGGAGTGCCAATGCTCTGTTGGCCATTCTTTGGTGACCAGCAAACAAACTGTTTCTATACTTGTAACAAATGGGGAATCGGAATGGAAATTACCAATGATGTCAAGAGAGACGAAGTAGAGAAGCTTGTTAGGGAGTTGATGGAAGGAGAGAAGGGTAAGAAAATGAAGAGTAAGGTCATGGAGTGGAAGAAACTTGCGGAAGAAGCCACGGCTCCAGAGGGTTCTTCGTTCAAAAATTTGGACAATCTAGTGAACCAAGTTCTACTGCAGAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

479

Amino Acids

53.76

Weight (kDa)

5.21

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 281 - 441 1.2e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016902)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44970
malus_domestica MD09G1091200.v1.1 MD17G1081100.v1.1
prunus_persica Prupe.3G233800_v2.0.a1
pyrus_communis pycom17g07940
rosa_chinensis RchiOBHm_Chr2g0162241
rosa_laevigata RLG00000021329
rosa_multiflora Rmu_sc0004020.1_g000026
rosa_roxburghii Rroxscaffold_2G00088230
rosa_rugosa Rorug02G0495300
rosa_samantha Rh2AG561800 Rh2BG574800 Rh2DG584800
rosa_wichuraiana Rw2G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1190
AciI CCGC 2 cut(s) 908, 1358
AclWI GGATC 3 cut(s) 588, 602, 1015
AcoI YGGCCR 2 cut(s) 740, 1181
AcsI RAATTY 4 cut(s) 277, 874, 1135, 1396
AcuI CTGAAG 3 cut(s) 414, 616, 1086
AdeI CACNNNGTG 1 cut(s) 1127
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 58, 1190
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 8 cut(s) 130, 197, 225, 457, 499, 599, 859, 1393
AjnI CCWGG 2 cut(s) 34, 553
AjuI GAANNNNNNNTTGG 2 cut(s) 529, 561
AluBI AGCT 7 cut(s) 392, 510, 665, 928, 1037, 1160, 1285
AluI AGCT 7 cut(s) 392, 510, 665, 928, 1037, 1160, 1285
Alw26I GTCTC 3 cut(s) 156, 800, 1263
AlwI GGATC 3 cut(s) 588, 602, 1015
AlwNI CAGNNNCTG 2 cut(s) 41, 392
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 6 cut(s) 211, 642, 740, 760, 986, 1181
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 4 cut(s) 277, 874, 1135, 1396
Asp700I GAANNNNTTC 1 cut(s) 201
AspLEI GCGC 2 cut(s) 141, 871
AspS9I GGNCC 4 cut(s) 38, 158, 475, 761
AsuHPI GGTGA 1 cut(s) 1205
AvaII GGWCC 3 cut(s) 38, 158, 475
BalI TGGCCA 1 cut(s) 1183
BbvI GCAGC 1 cut(s) 401
BccI CCATC 5 cut(s) 167, 203, 353, 389, 1294
BceAI ACGGC 1 cut(s) 1386
BciT130I CCWGG 2 cut(s) 36, 555
BciVI GTATCC 1 cut(s) 809
BcoDI GTCTC 3 cut(s) 156, 800, 1263
BfaI CTAG 2 cut(s) 155, 1409
BfmI CTRYAG 2 cut(s) 669, 1427
BfoI RGCGCY 1 cut(s) 142
BfrI CTTAAG 1 cut(s) 146
BfuI GTATCC 1 cut(s) 809
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 2 cut(s) 36, 555
Bme18I GGWCC 3 cut(s) 38, 158, 475
BmgT120I GGNCC 4 cut(s) 38, 158, 475, 761
BmiI GGNNCC 3 cut(s) 160, 288, 1374
BmrFI CCNGG 2 cut(s) 36, 555
BmsI GCATC 3 cut(s) 223, 682, 706
BpmI CTGGAG 3 cut(s) 321, 1182, 1359
BsaJI CCNNGG 2 cut(s) 645, 1368
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 1190
Bse1I ACTGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 2 cut(s) 36, 555
BseDI CCNNGG 2 cut(s) 645, 1368
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 2 cut(s) 58, 1190
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 338, 1017
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 401
BshFI GGCC 6 cut(s) 213, 644, 742, 762, 988, 1183
BslFI GGGAC 2 cut(s) 392, 960
BslI CCNNNNNNNGG 2 cut(s) 58, 1190
BsmAI GTCTC 3 cut(s) 156, 800, 1263
BsmBI CGTCTC 1 cut(s) 1263
BsmFI GGGAC 2 cut(s) 392, 960
BsmI GAATGC 1 cut(s) 848
BsnI GGCC 6 cut(s) 213, 644, 742, 762, 988, 1183
Bsp143I GATC 6 cut(s) 298, 580, 607, 736, 991, 1007
BspACI CCGC 2 cut(s) 908, 1358
BspANI GGCC 6 cut(s) 213, 644, 742, 762, 988, 1183
BspCNI CTCAG 2 cut(s) 337, 1018
BspLI GGNNCC 3 cut(s) 160, 288, 1374
BspMAI CTGCAG 2 cut(s) 673, 1431
BspPI GGATC 3 cut(s) 588, 602, 1015
BspTI CTTAAG 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 645, 1368
BssMI GATC 6 cut(s) 298, 580, 607, 736, 991, 1007
Bst2UI CCWGG 2 cut(s) 36, 555
Bst4CI ACNGT 5 cut(s) 430, 592, 821, 1127, 1211
Bst6I CTCTTC 3 cut(s) 425, 730, 1322
BstAFI CTTAAG 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 3 cut(s) 169, 324, 1026
BstDSI CCRYGG 2 cut(s) 645, 1368
BstEII GGTNACC 1 cut(s) 1193
BstF5I GGATG 1 cut(s) 721
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 2 cut(s) 141, 871
BstKTI GATC 6 cut(s) 301, 583, 610, 739, 994, 1010
BstMAI GTCTC 3 cut(s) 156, 800, 1263
BstMBI GATC 6 cut(s) 298, 580, 607, 736, 991, 1007
BstMWI GCNNNNNNNGC 2 cut(s) 1180, 1364
BstNI CCWGG 2 cut(s) 36, 555
BstPI GGTNACC 1 cut(s) 1193
BstSCI CCNGG 2 cut(s) 34, 553
BstSFI CTRYAG 2 cut(s) 669, 1427
BstV1I GCAGC 1 cut(s) 401
BstX2I RGATCY 2 cut(s) 580, 607
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 2 cut(s) 580, 607
BsuI GTATCC 1 cut(s) 809
BsuRI GGCC 6 cut(s) 213, 644, 742, 762, 988, 1183
BtgI CCRYGG 2 cut(s) 645, 1368
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 2 cut(s) 345, 1123
Cac8I GCNNGC 1 cut(s) 489
CaiI CAGNNNCTG 2 cut(s) 41, 392
CfoI GCGC 2 cut(s) 141, 871
Cfr13I GGNCC 4 cut(s) 38, 158, 475, 761
CviAII CATG 7 cut(s) 20, 367, 448, 622, 637, 704, 1339
DdeI CTNAG 3 cut(s) 169, 324, 1026
DpnI GATC 6 cut(s) 300, 582, 609, 738, 993, 1009
DpnII GATC 6 cut(s) 298, 580, 607, 736, 991, 1007
DraIII CACNNNGTG 1 cut(s) 1127
EaeI YGGCCR 2 cut(s) 740, 1181
Eam1104I CTCTTC 3 cut(s) 425, 730, 1322
EarI CTCTTC 3 cut(s) 425, 730, 1322
Eco147I AGGCCT 1 cut(s) 988
Eco47I GGWCC 3 cut(s) 38, 158, 475
Eco47III AGCGCT 1 cut(s) 140
Eco57I CTGAAG 3 cut(s) 414, 616, 1086
Eco91I GGTNACC 1 cut(s) 1193
EcoO109I RGGNCCY 2 cut(s) 38, 158
EcoO65I GGTNACC 1 cut(s) 1193
EcoRI GAATTC 1 cut(s) 1135
EcoRII CCWGG 2 cut(s) 34, 553
Esp3I CGTCTC 1 cut(s) 1263
FaeI CATG 7 cut(s) 23, 370, 451, 625, 640, 707, 1342
FaqI GGGAC 2 cut(s) 392, 960
FatI CATG 7 cut(s) 19, 366, 447, 621, 636, 703, 1338
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 728
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 2 cut(s) 155, 1409
GlaI GCGC 2 cut(s) 140, 870
GluI GCNGC 1 cut(s) 390
GsuI CTGGAG 3 cut(s) 321, 1182, 1359
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 6 cut(s) 213, 644, 742, 762, 988, 1183
HhaI GCGC 2 cut(s) 141, 871
Hin1II CATG 7 cut(s) 23, 370, 451, 625, 640, 707, 1342
Hin6I GCGC 2 cut(s) 139, 869
HinP1I GCGC 2 cut(s) 139, 869
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 2 cut(s) 663, 1283
HphI GGTGA 1 cut(s) 1205
Hpy166II GTNNAC 6 cut(s) 118, 378, 516, 892, 1076, 1414
Hpy188I TCNGA 9 cut(s) 272, 327, 358, 780, 786, 841, 1059, 1155, 1241
Hpy188III TCNNGA 6 cut(s) 206, 218, 530, 913, 1264, 1376
Hpy8I GTNNAC 6 cut(s) 118, 378, 516, 892, 1076, 1414
HpyAV CCTTC 4 cut(s) 224, 454, 1298, 1306
HpyCH4III ACNGT 5 cut(s) 430, 592, 821, 1127, 1211
HpyCH4V TGCA 5 cut(s) 348, 491, 671, 953, 1429
HpyF10VI GCNNNNNNNGC 2 cut(s) 1180, 1364
HpyF3I CTNAG 3 cut(s) 169, 324, 1026
Hsp92II CATG 7 cut(s) 23, 370, 451, 625, 640, 707, 1342
HspAI GCGC 2 cut(s) 139, 869
Kzo9I GATC 6 cut(s) 298, 580, 607, 736, 991, 1007
LmnI GCTCC 2 cut(s) 292, 1378
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 3 cut(s) 223, 682, 706
MaeI CTAG 2 cut(s) 155, 1409
MaeIII GTNAC 6 cut(s) 106, 260, 340, 771, 1193, 1223
MalI GATC 6 cut(s) 300, 582, 609, 738, 993, 1009
MboI GATC 6 cut(s) 298, 580, 607, 736, 991, 1007
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 2 cut(s) 580, 607
MlsI TGGCCA 1 cut(s) 1183
MluCI AATT 9 cut(s) 71, 277, 399, 461, 756, 874, 1135, 1248, 1396
MluNI TGGCCA 1 cut(s) 1183
MlyI GAGTC 3 cut(s) 257, 414, 1159
MmeI TCCRAC 2 cut(s) 1087, 1112
Mox20I TGGCCA 1 cut(s) 1183
MroXI GAANNNNTTC 1 cut(s) 201
MscI TGGCCA 1 cut(s) 1183
MseI TTAA 6 cut(s) 69, 147, 315, 627, 1092, 1438
MslI CAYNNNNRTG 2 cut(s) 371, 446
Msp20I TGGCCA 1 cut(s) 1183
MspA1I CMGCKG 2 cut(s) 392, 1160
MspCI CTTAAG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 36, 555
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 1 cut(s) 848
MvaI CCWGG 2 cut(s) 36, 555
MwoI GCNNNNNNNGC 2 cut(s) 1180, 1364
NdeII GATC 6 cut(s) 298, 580, 607, 736, 991, 1007
NlaIII CATG 7 cut(s) 23, 370, 451, 625, 640, 707, 1342
NlaIV GGNNCC 3 cut(s) 160, 288, 1374
NmuCI GTSAC 3 cut(s) 260, 340, 1193
PceI AGGCCT 1 cut(s) 988
PctI GAATGC 1 cut(s) 848
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 8 cut(s) 221, 453, 550, 781, 787, 836, 964, 1236
PflMI CCANNNNNTGG 1 cut(s) 1190
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 3 cut(s) 257, 413, 1158
PpsI GAGTC 3 cut(s) 257, 413, 1158
PpuMI RGGWCCY 2 cut(s) 38, 158
Psp5II RGGWCCY 2 cut(s) 38, 158
Psp6I CCWGG 2 cut(s) 34, 553
PspEI GGTNACC 1 cut(s) 1193
PspGI CCWGG 2 cut(s) 34, 553
PspN4I GGNNCC 3 cut(s) 160, 288, 1374
PspPI GGNCC 4 cut(s) 38, 158, 475, 761
PspPPI RGGWCCY 2 cut(s) 38, 158
PstI CTGCAG 2 cut(s) 673, 1431
PstNI CAGNNNCTG 2 cut(s) 41, 392
PsuI RGATCY 2 cut(s) 580, 607
PvuII CAGCTG 2 cut(s) 392, 1160
RseI CAYNNNNRTG 2 cut(s) 371, 446
SaqAI TTAA 6 cut(s) 69, 147, 315, 627, 1092, 1438
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 6 cut(s) 298, 580, 607, 736, 991, 1007
Sau96I GGNCC 4 cut(s) 38, 158, 475, 761
SchI GAGTC 3 cut(s) 257, 414, 1159
ScrFI CCNGG 2 cut(s) 36, 555
SfaNI GCATC 3 cut(s) 223, 682, 706
SfcI CTRYAG 2 cut(s) 669, 1427
SinI GGWCC 3 cut(s) 38, 158, 475
SmiMI CAYNNNNRTG 2 cut(s) 371, 446
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 9 cut(s) 71, 277, 399, 461, 756, 874, 1135, 1248, 1396
SseBI AGGCCT 1 cut(s) 988
SsiI CCGC 2 cut(s) 908, 1358
SspMI CTAG 2 cut(s) 155, 1409
StuI AGGCCT 1 cut(s) 988
StyD4I CCNGG 2 cut(s) 34, 553
TaaI ACNGT 5 cut(s) 430, 592, 821, 1127, 1211
TaqI TCGA 4 cut(s) 371, 768, 849, 1139
TasI AATT 9 cut(s) 71, 277, 399, 461, 756, 874, 1135, 1248, 1396
TfiI GAWTC 8 cut(s) 221, 453, 550, 781, 787, 836, 964, 1236
Tru1I TTAA 6 cut(s) 69, 147, 315, 627, 1092, 1438
Tru9I TTAA 6 cut(s) 69, 147, 315, 627, 1092, 1438
TscAI CASTG 2 cut(s) 345, 1130
TseFI GTSAC 3 cut(s) 260, 340, 1193
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 3 cut(s) 260, 340, 1193
TspDTI ATGAA 7 cut(s) 243, 355, 436, 575, 647, 956, 1340
TspGWI ACGGA 3 cut(s) 284, 549, 662
TspRI CASTG 2 cut(s) 345, 1130
Van91I CCANNNNNTGG 1 cut(s) 1190
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 3 cut(s) 38, 158, 475
XapI RAATTY 4 cut(s) 277, 874, 1135, 1396
XcmI CCANNNNNNNNNTGG 2 cut(s) 1103, 1176
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 2 cut(s) 155, 1409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.