MD17G1081100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016902
Physical Location & Seq
Forward (+)
6782840 .. 6785444
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1081100.v1.1.491

Sequence Viewer

Length: 444 bp
ATGGGCGGTGAAGATAGGTGGCAAGGCATTGCTCTAGCTCCAGTAAATACAGAGATAGAAGAGGAGCAATGGAGGAACTTCAACAACTCAGTGAATGCAGTTTCTTTAGGTTTTGTAGCAACTGCTATTCTCATCTCAATGTTTCTCGTCATGGCAATTTTTGAGAGATTTTTCAGGCCCAGATCATCACAGCTGACCACTTCAGCTCGGACTGCTGCCACTACTCATTTGGATCTTCAGGCACAGAATACCAACAATGATTCCAAGCTTGATCGCCACAACTATCACAAAATGAGAAATTATGCCAGAGAAGTATCTGTGATGATGCCTGGAGAAGATATGCCTACCTTCATTGCACATCCTGCTCCTGCACCGTGTCTGCCAGAGCGCATCGCTTGGCCTCTCCATCAACACAAACCGCGCTTCAGTTCCATCTCCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.68

Weight (kDa)

7.02

Isoelectric Point (pI)

64.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016902)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44970
malus_domestica MD09G1091200.v1.1 MD17G1081100.v1.1
prunus_persica Prupe.3G233800_v2.0.a1
pyrus_communis pycom17g07940
rosa_chinensis RchiOBHm_Chr2g0162241
rosa_laevigata RLG00000021329
rosa_multiflora Rmu_sc0004020.1_g000026
rosa_roxburghii Rroxscaffold_2G00088230
rosa_rugosa Rorug02G0495300
rosa_samantha Rh2AG561800 Rh2BG574800 Rh2DG584800
rosa_wichuraiana Rw2G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 421
AciI CCGC 2 cut(s) 6, 419
AclWI GGATC 1 cut(s) 240
AcuI CTGAAG 3 cut(s) 186, 221, 409
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 5 cut(s) 38, 193, 206, 268, 441
AluI AGCT 5 cut(s) 38, 193, 206, 268, 441
AlwI GGATC 1 cut(s) 240
AoxI GGCC 2 cut(s) 176, 398
ApeKI GCWGC 1 cut(s) 215
AspLEI GCGC 2 cut(s) 390, 423
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 20
BbvI GCAGC 1 cut(s) 202
BccI CCATC 2 cut(s) 414, 440
BciT130I CCWGG 1 cut(s) 330
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 2 cut(s) 315, 399
BpmI CTGGAG 3 cut(s) 24, 351, 421
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 3 cut(s) 27, 74, 351
BseBI CCWGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 358
BseMI GCAATG 3 cut(s) 27, 74, 351
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 421
BshFI GGCC 2 cut(s) 178, 400
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 2 cut(s) 178, 400
Bsp143I GATC 3 cut(s) 182, 232, 271
BspACI CCGC 2 cut(s) 6, 419
BspANI GGCC 2 cut(s) 178, 400
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 1 cut(s) 421
BspPI GGATC 1 cut(s) 240
BsrDI GCAATG 3 cut(s) 27, 74, 351
BsrI ACTGG 1 cut(s) 41
BssMI GATC 3 cut(s) 182, 232, 271
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 362
BstDEI CTNAG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 1 cut(s) 421
BstHHI GCGC 2 cut(s) 390, 423
BstKTI GATC 3 cut(s) 185, 235, 274
BstMBI GATC 3 cut(s) 182, 232, 271
BstMWI GCNNNNNNNGC 2 cut(s) 212, 362
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 2 cut(s) 178, 400
BtgZI GCGATG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 96
CfoI GCGC 2 cut(s) 390, 423
Cfr13I GGNCC 1 cut(s) 177
CviAII CATG 1 cut(s) 151
CviJI RGCY 7 cut(s) 38, 178, 193, 206, 268, 400, 441
CviKI_1 RGCY 7 cut(s) 38, 178, 193, 206, 268, 400, 441
DdeI CTNAG 1 cut(s) 88
DpnI GATC 3 cut(s) 184, 234, 273
DpnII GATC 3 cut(s) 182, 232, 271
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco57I CTGAAG 3 cut(s) 186, 221, 409
EcoRII CCWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 154
FaiI YATR 3 cut(s) 152, 303, 341
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 35
GlaI GCGC 2 cut(s) 389, 422
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 3 cut(s) 24, 351, 421
HaeIII GGCC 2 cut(s) 178, 400
HhaI GCGC 2 cut(s) 390, 423
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 2 cut(s) 388, 421
HinP1I GCGC 2 cut(s) 388, 421
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 260
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4V TGCA 3 cut(s) 98, 356, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 362
HpyF3I CTNAG 1 cut(s) 88
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 2 cut(s) 388, 421
Kzo9I GATC 3 cut(s) 182, 232, 271
LmnI GCTCC 3 cut(s) 43, 64, 370
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 2 cut(s) 315, 399
MaeI CTAG 1 cut(s) 35
MalI GATC 3 cut(s) 184, 234, 273
MboI GATC 3 cut(s) 182, 232, 271
MboII GAAGA 4 cut(s) 23, 71, 227, 347
MflI RGATCY 1 cut(s) 232
MluCI AATT 2 cut(s) 156, 298
MnlI CCTC 3 cut(s) 55, 66, 411
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 2 cut(s) 212, 362
NdeII GATC 3 cut(s) 182, 232, 271
NlaIII CATG 1 cut(s) 154
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspPI GGNCC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 137
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 182, 232, 271
Sau96I GGNCC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 330
SetI ASST 8 cut(s) 20, 40, 112, 195, 208, 270, 350, 443
SfaNI GCATC 2 cut(s) 315, 399
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 2 cut(s) 156, 298
SsiI CCGC 2 cut(s) 6, 419
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 375
TasI AATT 2 cut(s) 156, 298
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 1 cut(s) 96
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 340
TspRI CASTG 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.